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author | jschauma <jschauma> | 2003-09-30 01:03:56 +0000 |
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committer | jschauma <jschauma> | 2003-09-30 01:03:56 +0000 |
commit | 46601c136f15469aa9588b1ef89e999fe01d08e7 (patch) | |
tree | e739b148311a4775232f944be105503d86577741 /biology/coalesce/patches | |
parent | be4fe46ed0effdead7c830840316775deb3aa5d4 (diff) | |
download | pkgsrc-46601c136f15469aa9588b1ef89e999fe01d08e7.tar.gz |
Initial import of coalesce, one of the many packages provided by
brook at biology dot nmsu dot edu and his team at NMSU.
COALESCE fits the model which has a single population of constant size, and
estimates 4Nu, where N is the effective population size and u is the neutral
mutation rate per site.
Diffstat (limited to 'biology/coalesce/patches')
-rw-r--r-- | biology/coalesce/patches/patch-aa | 31 |
1 files changed, 31 insertions, 0 deletions
diff --git a/biology/coalesce/patches/patch-aa b/biology/coalesce/patches/patch-aa new file mode 100644 index 00000000000..fcc1df0d663 --- /dev/null +++ b/biology/coalesce/patches/patch-aa @@ -0,0 +1,31 @@ +$NetBSD: patch-aa,v 1.1.1.1 2003/09/30 01:03:56 jschauma Exp $ + +--- Makefile.orig 1996-02-29 11:00:09.000000000 -0500 ++++ Makefile 2003-09-29 20:51:32.000000000 -0400 +@@ -1,20 +1,20 @@ + LIBS = -lm + BINDIR = ./bin +-CFLAGS = -g +-CC = cc $(CFLAGS) ++#CFLAGS = -g ++#CC = cc $(CFLAGS) + DCC = gcc -g -DDMALLOC_FUNC_CHECK -ansi -pedantic + DLIBS = -lm -L/usr/local/lib -ldmalloc + # -O + PROGS = coalesce fluctuate + + coalesce : coalesce.c constants.h lamarc.h +- $(CC) coalesce.c $(LIBS) -o coalesce ++ $(CC) ${CFLAGS} coalesce.c ${LDFLAGS} $(LIBS) -o coalesce + + modellike.o : modellike.c +- $(CC) -c modellike.c ++ $(CC) ${CFLAGS} -c modellike.c + + fluctuate.o : fluctuate.c +- $(CC) -c fluctuate.c ++ $(CC) ${CFLAGS} -c fluctuate.c + + fluctuate : fluctuate.o modellike.o +- $(CC) fluctuate.o modellike.o $(LIBS) -o fluctuate ++ $(CC) ${CFLAGS} fluctuate.o modellike.o ${LDFLAGS} $(LIBS) -o fluctuate |