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| author | jschauma <jschauma> | 2003-09-30 02:11:06 +0000 |
|---|---|---|
| committer | jschauma <jschauma> | 2003-09-30 02:11:06 +0000 |
| commit | 09257360f28069f08e23ed17f51be57aaff1172f (patch) | |
| tree | 0e4640bf5346169837bede4343aa033f082327bb /biology/glimmer/Makefile | |
| parent | 12f6def2102a0f4a2c7319c2d071d8831c1a6a43 (diff) | |
| download | pkgsrc-09257360f28069f08e23ed17f51be57aaff1172f.tar.gz | |
Initial import of glimmer, one of the many packages provided by
brook at biology dot nmsu dot edu and his team at NMSU.
Glimmer (Gene Locator and Interpolated Markov Modeler) is a system for finding
genes in microbial DNA, especially the genomes of bacteria and archaea.
Glimmer uses interpolated Markov models (IMMs) to identify the coding regions
and distinguish them from noncoding DNA. The IMM approach uses a combination
of Markov models from 1st through 8th-order, weighting each model according to
its predictive power.
Diffstat (limited to 'biology/glimmer/Makefile')
| -rw-r--r-- | biology/glimmer/Makefile | 29 |
1 files changed, 29 insertions, 0 deletions
diff --git a/biology/glimmer/Makefile b/biology/glimmer/Makefile new file mode 100644 index 00000000000..5b9c3dbcf3f --- /dev/null +++ b/biology/glimmer/Makefile @@ -0,0 +1,29 @@ +# $NetBSD: Makefile,v 1.1.1.1 2003/09/30 02:11:06 jschauma Exp $ +# + +DISTNAME= glimmer21 +PKGNAME= glimmer-2.1 +WRKSRC= ${WRKDIR}/glimmer2.10 +CATEGORIES= biology +MASTER_SITES= ftp://ftp.tigr.org/pub/software/Glimmer/ + +MAINTAINER= hdp@cs.nmsu.edu +HOMEPAGE= ftp://ftp.tigr.org/pub/software/Glimmer/ +COMMENT= System for finding genes in microbial DNA + +USE_BUILDLINK2= yes + +do-install: +.for PROGRAM in adjust anomaly build-icm check codon-usage compare-lists extract \ + generate get-len get-putative glimmer2 long-orfs + ${INSTALL_PROGRAM} ${WRKSRC}/${PROGRAM} ${PREFIX}/bin +.endfor + ${INSTALL_DATA_DIR} ${PREFIX}/share/doc/glimmer + ${CP} ${WRKSRC}/README ${WRKSRC}/run-glimmer2.readme +.for DOC in run-glimmer2.readme build-icm.readme extract.readme glimmer2.readme long-orfs.readme + ${INSTALL_DATA} ${WRKSRC}/${DOC} ${PREFIX}/share/doc/glimmer +.endfor + ${INSTALL_DATA_DIR} ${PREFIX}/share/glimmer + ${INSTALL_SCRIPT} ${WRKSRC}/run-glimmer2 ${PREFIX}/share/glimmer + +.include "../../mk/bsd.pkg.mk" |