diff options
| author | jschauma <jschauma> | 2003-09-26 03:52:47 +0000 |
|---|---|---|
| committer | jschauma <jschauma> | 2003-09-26 03:52:47 +0000 |
| commit | 2d7faa325f4cfcd404292a72ab4b8505d6e062de (patch) | |
| tree | 218097c09ee71f732d2d35ca7025d859a19f9758 /biology/hmmer/patches/patch-aa | |
| parent | 325303cff2d6cb32a3b812be3eea93fef3a9f165 (diff) | |
| download | pkgsrc-2d7faa325f4cfcd404292a72ab4b8505d6e062de.tar.gz | |
Initial import of hmmer, one of the many packages provided by
brook at biology dot nmsu dot edu and his team at NMSU.
HMMER is an implementation of profile HMM methods for sensitive database
searches using multiple sequence alignments as queries. HMMER takes
multiple sequence alignement as input and builds statistical model
called "Hidden Markov Model" which can be used as a query into a
sequence database to find and/or align additional homologues of the
sequence family.
Diffstat (limited to 'biology/hmmer/patches/patch-aa')
| -rw-r--r-- | biology/hmmer/patches/patch-aa | 27 |
1 files changed, 27 insertions, 0 deletions
diff --git a/biology/hmmer/patches/patch-aa b/biology/hmmer/patches/patch-aa new file mode 100644 index 00000000000..08716d03d06 --- /dev/null +++ b/biology/hmmer/patches/patch-aa @@ -0,0 +1,27 @@ +$NetBSD: patch-aa,v 1.1.1.1 2003/09/26 03:52:47 jschauma Exp $ + +--- Makefile.in.orig 2003-06-13 17:05:13.000000000 -0400 ++++ Makefile.in 2003-09-25 23:47:27.000000000 -0400 +@@ -30,11 +30,12 @@ + exec_prefix = @exec_prefix@ + BINDIR = @bindir@ + MANDIR = @mandir@ ++INSTBIN = ${BSD_INSTALL_PROGRAM} + + # how to install the man pages; + # cp is generally fine, unless you preformat your pages. + # +-INSTMAN = cp ++INSTMAN = ${BSD_INSTALL_MAN} + MANSUFFIX = 1 + + # your compiler and compiler flags +@@ -112,7 +113,7 @@ + mkdir -p ${BINDIR} + -mkdir -p ${MANDIR}/man${MANSUFFIX} + for file in $(PROGS) $(PVMPROGS); do\ +- cp src/$$file $(BINDIR)/;\ ++ $(INSTBIN) src/$$file $(BINDIR)/;\ + done + -for file in hmmer $(PROGS); do\ + $(INSTMAN) documentation/man/$$file.man $(MANDIR)/man$(MANSUFFIX)/$$file.$(MANSUFFIX);\ |