diff options
| author | jschauma <jschauma@pkgsrc.org> | 2003-09-27 22:24:56 +0000 |
|---|---|---|
| committer | jschauma <jschauma@pkgsrc.org> | 2003-09-27 22:24:56 +0000 |
| commit | b627116d1be4adf4643bfd6954f61b460de6daaf (patch) | |
| tree | bc3853eaa3aad636ff4353b466948ab8aa97c40f /biology/mummer/PLIST | |
| parent | 628549d06a7f33920ff93d7744db6d11ecbf5279 (diff) | |
| download | pkgsrc-b627116d1be4adf4643bfd6954f61b460de6daaf.tar.gz | |
Initial import of mummer, one of the many packages provided by
brook at biology dot nmsu dot edu and his team at NMSU.
Mummer is a system for aligning whole genome sequences. Using an efficient
data structure called a suffix tree, the system is able rapidly to align
sequences containing millions of nucleotides whether in complete or draft
form. MUMmer can also align incomplete genomes; it handles the 100s or 1000s
of contigs from a shotgun sequencing project with ease, and will align them to
another set of contigs or a genome using the NUCmer program included with the
system.
Diffstat (limited to 'biology/mummer/PLIST')
| -rw-r--r-- | biology/mummer/PLIST | 44 |
1 files changed, 44 insertions, 0 deletions
diff --git a/biology/mummer/PLIST b/biology/mummer/PLIST new file mode 100644 index 00000000000..ae9522e6679 --- /dev/null +++ b/biology/mummer/PLIST @@ -0,0 +1,44 @@ +@comment $NetBSD: PLIST,v 1.1.1.1 2003/09/27 22:24:57 jschauma Exp $ +bin/annotate +bin/combineMUMs +bin/gaps +bin/mgaps +bin/mummer +bin/postnuc +bin/postpro +bin/prenuc +bin/prepro +bin/repeat-match +bin/show-aligns +bin/show-coords +bin/show-tiling +share/doc/html/mummer/covplot.gif +share/doc/html/mummer/dotplot.gif +share/doc/html/mummer/email.jpg +share/doc/html/mummer/gaps.gif +share/doc/html/mummer/index.html +share/doc/html/mummer/manual_logo.gif +share/doc/html/mummer/mgaps.gif +share/doc/html/mummer/nuc_proex.gif +share/doc/html/mummer/nucex.gif +share/doc/html/mummer/osi.gif +share/doc/html/mummer/pro_proex.gif +share/doc/mummer/maxmat3man.pdf +share/doc/mummer/maxmat3man.tex +share/doc/mummer/maxmat3src.pdf +share/doc/mummer/nucmer.README +share/doc/mummer/optionman.sty +share/doc/mummer/promer.README +share/doc/mummer/run-mummer1.README +share/doc/mummer/run-mummer3.README +share/doc/mummer/skaff.sty +share/mummer/exact-tandems +share/mummer/mummerplot +share/mummer/nucmer +share/mummer/nucmer2xfig +share/mummer/promer +share/mummer/run-mummer1 +share/mummer/run-mummer3 +@dirrm share/mummer +@dirrm share/doc/mummer +@dirrm share/doc/html/mummer |