diff options
author | bacon <bacon@pkgsrc.org> | 2021-06-11 13:47:39 +0000 |
---|---|---|
committer | bacon <bacon@pkgsrc.org> | 2021-06-11 13:47:39 +0000 |
commit | 6f9b71eb2bd7242756c187f6c4019de4d04d32a7 (patch) | |
tree | 6a32b3877960098615de20cac789dfde18132c92 /biology/ncbi-blast+/PLIST | |
parent | d041d31e46656d8f8149e44db433ca4a000a5960 (diff) | |
download | pkgsrc-6f9b71eb2bd7242756c187f6c4019de4d04d32a7.tar.gz |
biology/ncbi-blast+: Update to 2.11.0
Release notes: https://www.ncbi.nlm.nih.gov/books/NBK131777/
Diffstat (limited to 'biology/ncbi-blast+/PLIST')
-rw-r--r-- | biology/ncbi-blast+/PLIST | 141 |
1 files changed, 136 insertions, 5 deletions
diff --git a/biology/ncbi-blast+/PLIST b/biology/ncbi-blast+/PLIST index 4169608ac79..c2f07ec0ecc 100644 --- a/biology/ncbi-blast+/PLIST +++ b/biology/ncbi-blast+/PLIST @@ -1,13 +1,16 @@ -@comment $NetBSD: PLIST,v 1.2 2019/01/07 15:00:10 bacon Exp $ +@comment $NetBSD: PLIST,v 1.3 2021/06/11 13:47:39 bacon Exp $ bin/blast_formatter +bin/blast_report bin/blastdb_aliastool bin/blastdb_convert +bin/blastdb_path bin/blastdbcheck bin/blastdbcmd bin/blastdbcp bin/blastn bin/blastp bin/blastx +bin/cleanup-blastdb-volumes.py bin/convert2blastmask bin/datatool bin/deltablast @@ -40,6 +43,7 @@ include/ncbi-tools++/algo/blast/api/blast_aux.hpp include/ncbi-tools++/algo/blast/api/blast_dbindex.hpp include/ncbi-tools++/algo/blast/api/blast_exception.hpp include/ncbi-tools++/algo/blast/api/blast_mtlock.hpp +include/ncbi-tools++/algo/blast/api/blast_node.hpp include/ncbi-tools++/algo/blast/api/blast_nucl_options.hpp include/ncbi-tools++/algo/blast/api/blast_options.hpp include/ncbi-tools++/algo/blast/api/blast_options_builder.hpp @@ -50,6 +54,7 @@ include/ncbi-tools++/algo/blast/api/blast_rps_options.hpp include/ncbi-tools++/algo/blast/api/blast_seqinfosrc.hpp include/ncbi-tools++/algo/blast/api/blast_seqinfosrc_aux.hpp include/ncbi-tools++/algo/blast/api/blast_types.hpp +include/ncbi-tools++/algo/blast/api/blast_usage_report.hpp include/ncbi-tools++/algo/blast/api/blastp_kmer_options.hpp include/ncbi-tools++/algo/blast/api/blastx_options.hpp include/ncbi-tools++/algo/blast/api/cdd_pssm_input.hpp @@ -273,6 +278,8 @@ include/ncbi-tools++/common/ncbi_build_ver.h.last include/ncbi-tools++/common/ncbi_export.h include/ncbi-tools++/common/ncbi_package_ver.h include/ncbi-tools++/common/ncbi_pch_impl.hpp +include/ncbi-tools++/common/ncbi_revision.h +include/ncbi-tools++/common/ncbi_revision.h.in include/ncbi-tools++/common/ncbi_skew_guard.h include/ncbi-tools++/common/ncbi_source_ver.cmake_nodep include/ncbi-tools++/common/ncbi_source_ver.h @@ -286,6 +293,7 @@ include/ncbi-tools++/connect/error_codes.hpp include/ncbi-tools++/connect/impl/server_connection.hpp include/ncbi-tools++/connect/impl/thread_pool_for_server.hpp include/ncbi-tools++/connect/ncbi_base64.h +include/ncbi-tools++/connect/ncbi_blowfish.h include/ncbi-tools++/connect/ncbi_buffer.h include/ncbi-tools++/connect/ncbi_conn_exception.hpp include/ncbi-tools++/connect/ncbi_conn_reader_writer.hpp @@ -307,6 +315,7 @@ include/ncbi-tools++/connect/ncbi_iprange.h include/ncbi-tools++/connect/ncbi_ipv6.h include/ncbi-tools++/connect/ncbi_lbos.hpp include/ncbi-tools++/connect/ncbi_localip.h +include/ncbi-tools++/connect/ncbi_localip.hpp include/ncbi-tools++/connect/ncbi_mbedtls.h include/ncbi-tools++/connect/ncbi_memory_connector.h include/ncbi-tools++/connect/ncbi_misc.hpp @@ -318,6 +327,7 @@ include/ncbi-tools++/connect/ncbi_pipe_connector.hpp include/ncbi-tools++/connect/ncbi_sendmail.h include/ncbi-tools++/connect/ncbi_server_info.h include/ncbi-tools++/connect/ncbi_service.h +include/ncbi-tools++/connect/ncbi_service.hpp include/ncbi-tools++/connect/ncbi_service_connector.h include/ncbi-tools++/connect/ncbi_service_cxx.hpp include/ncbi-tools++/connect/ncbi_socket.h @@ -327,6 +337,7 @@ include/ncbi-tools++/connect/ncbi_socket_unix.h include/ncbi-tools++/connect/ncbi_socket_unix.hpp include/ncbi-tools++/connect/ncbi_tls.h include/ncbi-tools++/connect/ncbi_types.h +include/ncbi-tools++/connect/ncbi_usage_report.hpp include/ncbi-tools++/connect/ncbi_userhost.hpp include/ncbi-tools++/connect/ncbi_util.h include/ncbi-tools++/connect/server.hpp @@ -427,6 +438,7 @@ include/ncbi-tools++/corelib/ncbi_tree.hpp include/ncbi-tools++/corelib/ncbi_url.hpp include/ncbi-tools++/corelib/ncbi_xstr.hpp include/ncbi-tools++/corelib/ncbiapp.hpp +include/ncbi-tools++/corelib/ncbiapp_api.hpp include/ncbi-tools++/corelib/ncbiargs.hpp include/ncbi-tools++/corelib/ncbiatomic.h include/ncbi-tools++/corelib/ncbiatomic.hpp @@ -454,6 +466,7 @@ include/ncbi-tools++/corelib/ncbistl.hpp include/ncbi-tools++/corelib/ncbistr.hpp include/ncbi-tools++/corelib/ncbistr_util.hpp include/ncbi-tools++/corelib/ncbistre.hpp +include/ncbi-tools++/corelib/ncbisys.hpp include/ncbi-tools++/corelib/ncbithr.hpp include/ncbi-tools++/corelib/ncbithr_conf.hpp include/ncbi-tools++/corelib/ncbitime.hpp @@ -478,6 +491,7 @@ include/ncbi-tools++/corelib/tempstr.hpp include/ncbi-tools++/corelib/test_boost.hpp include/ncbi-tools++/corelib/test_mt.hpp include/ncbi-tools++/corelib/version.hpp +include/ncbi-tools++/corelib/version_api.hpp include/ncbi-tools++/db/error_codes.hpp include/ncbi-tools++/db/sqlite/sqlitewrapp.hpp include/ncbi-tools++/dbapi/cache/dbapi_blob_cache.hpp @@ -497,6 +511,7 @@ include/ncbi-tools++/dbapi/driver/impl/dbapi_impl_cmd.hpp include/ncbi-tools++/dbapi/driver/impl/dbapi_impl_connection.hpp include/ncbi-tools++/dbapi/driver/impl/dbapi_impl_context.hpp include/ncbi-tools++/dbapi/driver/impl/dbapi_impl_result.hpp +include/ncbi-tools++/dbapi/driver/impl/dbapi_pool_balancer.hpp include/ncbi-tools++/dbapi/driver/impl/handle_stack.hpp include/ncbi-tools++/dbapi/driver/interfaces.hpp include/ncbi-tools++/dbapi/driver/odbc/interfaces.hpp @@ -535,6 +550,76 @@ include/ncbi-tools++/html/pager.hpp include/ncbi-tools++/html/selection.hpp include/ncbi-tools++/html/writer_htmlenc.hpp include/ncbi-tools++/misc/error_codes.hpp +include/ncbi-tools++/misc/jsonwrapp/jsonwrapp.hpp +include/ncbi-tools++/misc/jsonwrapp/jsonwrapp10.hpp +include/ncbi-tools++/misc/jsonwrapp/jsonwrapp11.hpp +include/ncbi-tools++/misc/jsonwrapp/rapidjson10/__NCBI_read_me.txt +include/ncbi-tools++/misc/jsonwrapp/rapidjson10/allocators.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson10/document.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson10/encodedstream.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson10/encodings.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson10/error/en.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson10/error/error.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson10/filereadstream.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson10/filewritestream.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson10/internal/biginteger.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson10/internal/diyfp.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson10/internal/dtoa.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson10/internal/ieee754.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson10/internal/itoa.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson10/internal/meta.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson10/internal/pow10.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson10/internal/stack.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson10/internal/strfunc.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson10/internal/strtod.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson10/license.txt +include/ncbi-tools++/misc/jsonwrapp/rapidjson10/memorybuffer.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson10/memorystream.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson10/msinttypes/inttypes.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson10/msinttypes/stdint.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson10/pointer.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson10/prettywriter.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson10/rapidjson.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson10/reader.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson10/stringbuffer.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson10/writer.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson11/__NCBI_read_me.txt +include/ncbi-tools++/misc/jsonwrapp/rapidjson11/allocators.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson11/document.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson11/encodedstream.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson11/encodings.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson11/error/en.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson11/error/error.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson11/filereadstream.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson11/filewritestream.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson11/fwd.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson11/internal/biginteger.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson11/internal/diyfp.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson11/internal/dtoa.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson11/internal/ieee754.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson11/internal/itoa.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson11/internal/meta.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson11/internal/pow10.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson11/internal/regex.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson11/internal/stack.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson11/internal/strfunc.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson11/internal/strtod.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson11/internal/swap.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson11/istreamwrapper.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson11/license.txt +include/ncbi-tools++/misc/jsonwrapp/rapidjson11/memorybuffer.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson11/memorystream.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson11/msinttypes/inttypes.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson11/msinttypes/stdint.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson11/ostreamwrapper.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson11/pointer.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson11/prettywriter.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson11/rapidjson.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson11/reader.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson11/schema.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson11/stream.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson11/stringbuffer.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson11/writer.h include/ncbi-tools++/ncbi_pch.hpp include/ncbi-tools++/ncbi_random_macro.h include/ncbi-tools++/ncbi_source_ver.h @@ -946,6 +1031,10 @@ include/ncbi-tools++/objects/coords/HGVS_Coordinate_Set.hpp include/ncbi-tools++/objects/coords/HGVS_Coordinate_Set_.hpp include/ncbi-tools++/objects/coords/NCBI_HGVSCoordinate_module.hpp include/ncbi-tools++/objects/coords/objcoords__.hpp +include/ncbi-tools++/objects/dbsnp/primary_track/dbsnp.grpc.pb.h +include/ncbi-tools++/objects/dbsnp/primary_track/dbsnp.pb.h +include/ncbi-tools++/objects/dbsnp/primary_track/impl/snpptis_impl.hpp +include/ncbi-tools++/objects/dbsnp/primary_track/snpptis.hpp include/ncbi-tools++/objects/docsum/.cvsignore include/ncbi-tools++/objects/docsum/.gitignore include/ncbi-tools++/objects/docsum/Assay.hpp @@ -1219,6 +1308,8 @@ include/ncbi-tools++/objects/genomecoll/GCClient_GetAssemblyBySequ.hpp include/ncbi-tools++/objects/genomecoll/GCClient_GetAssemblyBySequ_.hpp include/ncbi-tools++/objects/genomecoll/GCClient_GetEquivalentAsse.hpp include/ncbi-tools++/objects/genomecoll/GCClient_GetEquivalentAsse_.hpp +include/ncbi-tools++/objects/genomecoll/GCClient_SequenceInfo.hpp +include/ncbi-tools++/objects/genomecoll/GCClient_SequenceInfo_.hpp include/ncbi-tools++/objects/genomecoll/GCClient_ValidateChrTypeLo.hpp include/ncbi-tools++/objects/genomecoll/GCClient_ValidateChrTypeLo_.hpp include/ncbi-tools++/objects/genomecoll/GCClient_ValidateChrTypeLx.hpp @@ -3398,6 +3489,7 @@ include/ncbi-tools++/objtools/alnmgr/aln_container.hpp include/ncbi-tools++/objtools/alnmgr/aln_converters.hpp include/ncbi-tools++/objtools/alnmgr/aln_explorer.hpp include/ncbi-tools++/objtools/alnmgr/aln_generators.hpp +include/ncbi-tools++/objtools/alnmgr/aln_rng_coll_list_oper.hpp include/ncbi-tools++/objtools/alnmgr/aln_rng_coll_oper.hpp include/ncbi-tools++/objtools/alnmgr/aln_seqid.hpp include/ncbi-tools++/objtools/alnmgr/aln_serial.hpp @@ -3464,7 +3556,9 @@ include/ncbi-tools++/objtools/cleanup/autogenerated_cleanup.hpp include/ncbi-tools++/objtools/cleanup/capitalization_string.hpp include/ncbi-tools++/objtools/cleanup/cleanup.hpp include/ncbi-tools++/objtools/cleanup/cleanup_change.hpp -include/ncbi-tools++/objtools/cleanup/newcleanup.hpp +include/ncbi-tools++/objtools/cleanup/cleanup_message.hpp +include/ncbi-tools++/objtools/cleanup/cleanup_pub.hpp +include/ncbi-tools++/objtools/cleanup/fix_feature_id.hpp include/ncbi-tools++/objtools/data_loaders/blastdb/bdbloader.hpp include/ncbi-tools++/objtools/data_loaders/blastdb/bdbloader_rmt.hpp include/ncbi-tools++/objtools/data_loaders/blastdb/blastdb_adapter.hpp @@ -3476,6 +3570,7 @@ include/ncbi-tools++/objtools/data_loaders/genbank/cache/writer_cache.hpp include/ncbi-tools++/objtools/data_loaders/genbank/cache/writer_cache_entry.hpp include/ncbi-tools++/objtools/data_loaders/genbank/gbloader.hpp include/ncbi-tools++/objtools/data_loaders/genbank/gbloader_params.h +include/ncbi-tools++/objtools/data_loaders/genbank/gbnative.hpp include/ncbi-tools++/objtools/data_loaders/genbank/gicache/reader_gicache.hpp include/ncbi-tools++/objtools/data_loaders/genbank/gicache/reader_gicache_entry.hpp include/ncbi-tools++/objtools/data_loaders/genbank/gicache/reader_gicache_params.h @@ -3492,12 +3587,14 @@ include/ncbi-tools++/objtools/data_loaders/genbank/impl/incr_time.hpp include/ncbi-tools++/objtools/data_loaders/genbank/impl/info_cache.hpp include/ncbi-tools++/objtools/data_loaders/genbank/impl/processor.hpp include/ncbi-tools++/objtools/data_loaders/genbank/impl/processors.hpp +include/ncbi-tools++/objtools/data_loaders/genbank/impl/psg_loader_impl.hpp include/ncbi-tools++/objtools/data_loaders/genbank/impl/reader_id1_base.hpp include/ncbi-tools++/objtools/data_loaders/genbank/impl/reader_id2_base.hpp include/ncbi-tools++/objtools/data_loaders/genbank/impl/reader_service.hpp include/ncbi-tools++/objtools/data_loaders/genbank/impl/request_result.hpp include/ncbi-tools++/objtools/data_loaders/genbank/impl/standalone_result.hpp include/ncbi-tools++/objtools/data_loaders/genbank/impl/statistics.hpp +include/ncbi-tools++/objtools/data_loaders/genbank/psg_loader.hpp include/ncbi-tools++/objtools/data_loaders/genbank/reader.hpp include/ncbi-tools++/objtools/data_loaders/genbank/reader_interface.hpp include/ncbi-tools++/objtools/data_loaders/genbank/reader_params.h @@ -3514,7 +3611,6 @@ include/ncbi-tools++/objtools/data_loaders/genbank/seqref.hpp include/ncbi-tools++/objtools/data_loaders/genbank/writer.hpp include/ncbi-tools++/objtools/data_loaders/genbank/writer_interface.hpp include/ncbi-tools++/objtools/data_loaders/loaders.hpp -include/ncbi-tools++/objtools/edit/apply_mods.hpp include/ncbi-tools++/objtools/edit/apply_object.hpp include/ncbi-tools++/objtools/edit/autodef.hpp include/ncbi-tools++/objtools/edit/autodef_options.hpp @@ -3541,6 +3637,7 @@ include/ncbi-tools++/objtools/edit/promote.hpp include/ncbi-tools++/objtools/edit/publication_edit.hpp include/ncbi-tools++/objtools/edit/remote_updater.hpp include/ncbi-tools++/objtools/edit/rna_edit.hpp +include/ncbi-tools++/objtools/edit/seq_edit.hpp include/ncbi-tools++/objtools/edit/seq_entry_edit.hpp include/ncbi-tools++/objtools/edit/seqid_guesser.hpp include/ncbi-tools++/objtools/edit/source_edit.hpp @@ -3604,12 +3701,17 @@ include/ncbi-tools++/objtools/format/sam_formatter.hpp include/ncbi-tools++/objtools/format/text_ostream.hpp include/ncbi-tools++/objtools/logging/listener.hpp include/ncbi-tools++/objtools/logging/message.hpp +include/ncbi-tools++/objtools/pubseq_gateway/client/impl/misc.hpp +include/ncbi-tools++/objtools/pubseq_gateway/client/psg_client.hpp include/ncbi-tools++/objtools/readers/agp_converter.hpp include/ncbi-tools++/objtools/readers/agp_read.hpp include/ncbi-tools++/objtools/readers/agp_seq_entry.hpp include/ncbi-tools++/objtools/readers/agp_util.hpp include/ncbi-tools++/objtools/readers/agp_validate_reader.hpp +include/ncbi-tools++/objtools/readers/aln_error_reporter.hpp +include/ncbi-tools++/objtools/readers/aln_formats.hpp include/ncbi-tools++/objtools/readers/aln_reader.hpp +include/ncbi-tools++/objtools/readers/alnread.hpp include/ncbi-tools++/objtools/readers/bed_reader.hpp include/ncbi-tools++/objtools/readers/cigar.hpp include/ncbi-tools++/objtools/readers/error_container.hpp @@ -3623,6 +3725,7 @@ include/ncbi-tools++/objtools/readers/gff2_data.hpp include/ncbi-tools++/objtools/readers/gff2_reader.hpp include/ncbi-tools++/objtools/readers/gff3_reader.hpp include/ncbi-tools++/objtools/readers/gff3_sofa.hpp +include/ncbi-tools++/objtools/readers/gff_base_columns.hpp include/ncbi-tools++/objtools/readers/gff_reader.hpp include/ncbi-tools++/objtools/readers/glimmer_reader.hpp include/ncbi-tools++/objtools/readers/gtf_reader.hpp @@ -3632,13 +3735,20 @@ include/ncbi-tools++/objtools/readers/iidmapper.hpp include/ncbi-tools++/objtools/readers/line_error.hpp include/ncbi-tools++/objtools/readers/message_listener.hpp include/ncbi-tools++/objtools/readers/microarray_reader.hpp +include/ncbi-tools++/objtools/readers/mod_error.hpp +include/ncbi-tools++/objtools/readers/mod_reader.hpp include/ncbi-tools++/objtools/readers/phrap.hpp +include/ncbi-tools++/objtools/readers/psl_reader.hpp include/ncbi-tools++/objtools/readers/read_util.hpp include/ncbi-tools++/objtools/readers/reader_base.hpp +include/ncbi-tools++/objtools/readers/reader_error_codes.hpp include/ncbi-tools++/objtools/readers/reader_exception.hpp include/ncbi-tools++/objtools/readers/reader_idgen.hpp +include/ncbi-tools++/objtools/readers/reader_listener.hpp +include/ncbi-tools++/objtools/readers/reader_message.hpp include/ncbi-tools++/objtools/readers/readfeat.hpp include/ncbi-tools++/objtools/readers/rm_reader.hpp +include/ncbi-tools++/objtools/readers/seqid_validate.hpp include/ncbi-tools++/objtools/readers/source_mod_parser.hpp include/ncbi-tools++/objtools/readers/source_mod_parser_wrapper.hpp include/ncbi-tools++/objtools/readers/struct_cmt_reader.hpp @@ -3662,6 +3772,8 @@ include/ncbi-tools++/serial/delaybuf.hpp include/ncbi-tools++/serial/enumvalues.hpp include/ncbi-tools++/serial/error_codes.hpp include/ncbi-tools++/serial/exception.hpp +include/ncbi-tools++/serial/grpc_integration/grpc_integration.hpp +include/ncbi-tools++/serial/grpc_integration/impl/grpc_support.hpp include/ncbi-tools++/serial/impl/aliasinfo.hpp include/ncbi-tools++/serial/impl/asntypes.hpp include/ncbi-tools++/serial/impl/autoptrinfo.hpp @@ -3759,12 +3871,18 @@ include/ncbi-tools++/util/ascii85.hpp include/ncbi-tools++/util/bitset/bitset_debug.hpp include/ncbi-tools++/util/bitset/bitset_pool.hpp include/ncbi-tools++/util/bitset/bm.h +include/ncbi-tools++/util/bitset/bm64.h +include/ncbi-tools++/util/bitset/bmaggregator.h include/ncbi-tools++/util/bitset/bmalgo.h include/ncbi-tools++/util/bitset/bmalgo_impl.h include/ncbi-tools++/util/bitset/bmalgo_similarity.h include/ncbi-tools++/util/bitset/bmalloc.h include/ncbi-tools++/util/bitset/bmavx2.h +include/ncbi-tools++/util/bitset/bmavx512.h include/ncbi-tools++/util/bitset/bmblocks.h +include/ncbi-tools++/util/bitset/bmbmatrix.h +include/ncbi-tools++/util/bitset/bmbmi1.h +include/ncbi-tools++/util/bitset/bmbmi2.h include/ncbi-tools++/util/bitset/bmbuffer.h include/ncbi-tools++/util/bitset/bmconst.h include/ncbi-tools++/util/bitset/bmdbg.h @@ -3772,7 +3890,9 @@ include/ncbi-tools++/util/bitset/bmdef.h include/ncbi-tools++/util/bitset/bmfunc.h include/ncbi-tools++/util/bitset/bmfwd.h include/ncbi-tools++/util/bitset/bmgamma.h +include/ncbi-tools++/util/bitset/bmintervals.h include/ncbi-tools++/util/bitset/bmrandom.h +include/ncbi-tools++/util/bitset/bmrs.h include/ncbi-tools++/util/bitset/bmserial.h include/ncbi-tools++/util/bitset/bmsimd.h include/ncbi-tools++/util/bitset/bmsparsevec.h @@ -3783,11 +3903,13 @@ include/ncbi-tools++/util/bitset/bmsparsevec_util.h include/ncbi-tools++/util/bitset/bmsse2.h include/ncbi-tools++/util/bitset/bmsse4.h include/ncbi-tools++/util/bitset/bmsse_util.h +include/ncbi-tools++/util/bitset/bmstrsparsevec.h include/ncbi-tools++/util/bitset/bmtimer.h include/ncbi-tools++/util/bitset/bmtrans.h include/ncbi-tools++/util/bitset/bmundef.h include/ncbi-tools++/util/bitset/bmutil.h include/ncbi-tools++/util/bitset/bmvmin.h +include/ncbi-tools++/util/bitset/bmxor.h include/ncbi-tools++/util/bitset/encoding.h include/ncbi-tools++/util/bitset/license.txt include/ncbi-tools++/util/bitset/ncbi_bitset.hpp @@ -3802,6 +3924,7 @@ include/ncbi-tools++/util/cache/icache.hpp include/ncbi-tools++/util/cache/icache_cf.hpp include/ncbi-tools++/util/cache/icache_clean_thread.hpp include/ncbi-tools++/util/checksum.hpp +include/ncbi-tools++/util/compile_time.hpp include/ncbi-tools++/util/compress/archive.hpp include/ncbi-tools++/util/compress/archive_.hpp include/ncbi-tools++/util/compress/bzip2.hpp @@ -3818,6 +3941,7 @@ include/ncbi-tools++/util/compress/zlib/zlib.h include/ncbi-tools++/util/compress/zlib/zutil.h include/ncbi-tools++/util/creaders/alnread.h include/ncbi-tools++/util/creaders/creaders_export.h +include/ncbi-tools++/util/data_histogram.hpp include/ncbi-tools++/util/ddump_viewer.hpp include/ncbi-tools++/util/dictionary.hpp include/ncbi-tools++/util/dictionary_util.hpp @@ -3830,6 +3954,8 @@ include/ncbi-tools++/util/format_guess.hpp include/ncbi-tools++/util/histogram_binning.hpp include/ncbi-tools++/util/icanceled.hpp include/ncbi-tools++/util/id_mux.hpp +include/ncbi-tools++/util/impl/compile_time_bits.hpp +include/ncbi-tools++/util/impl/ct_crc32.hpp include/ncbi-tools++/util/impl/floating_point_comparison.hpp include/ncbi-tools++/util/itransaction.hpp include/ncbi-tools++/util/itree.hpp @@ -3857,6 +3983,7 @@ include/ncbi-tools++/util/ncbi_url.hpp include/ncbi-tools++/util/random_gen.hpp include/ncbi-tools++/util/range.hpp include/ncbi-tools++/util/range_coll.hpp +include/ncbi-tools++/util/range_set.hpp include/ncbi-tools++/util/rangelist.hpp include/ncbi-tools++/util/rangemap.hpp include/ncbi-tools++/util/rangemap.inl @@ -3951,13 +4078,13 @@ lib/ncbi-tools++/libconnect-static.a lib/ncbi-tools++/libconnect.a lib/ncbi-tools++/libconnssl-static.a lib/ncbi-tools++/libconnssl.a -lib/ncbi-tools++/libcreaders-static.a -lib/ncbi-tools++/libcreaders.a lib/ncbi-tools++/libdbapi-static.a lib/ncbi-tools++/libdbapi.a lib/ncbi-tools++/libdbapi_driver-dll.so lib/ncbi-tools++/libdbapi_driver-static.a lib/ncbi-tools++/libdbapi_driver.a +lib/ncbi-tools++/libdbsnp_ptis-static.a +lib/ncbi-tools++/libdbsnp_ptis.a lib/ncbi-tools++/libdbsnp_tooltip_service-static.a lib/ncbi-tools++/libdbsnp_tooltip_service.a lib/ncbi-tools++/libdocsum-static.a @@ -3984,6 +4111,8 @@ lib/ncbi-tools++/libgenesbyloc-static.a lib/ncbi-tools++/libgenesbyloc.a lib/ncbi-tools++/libgenome_collection-static.a lib/ncbi-tools++/libgenome_collection.a +lib/ncbi-tools++/libgrpc_integration-static.a +lib/ncbi-tools++/libgrpc_integration.a lib/ncbi-tools++/libhomologene-static.a lib/ncbi-tools++/libhomologene.a lib/ncbi-tools++/libid1-static.a @@ -4062,6 +4191,8 @@ lib/ncbi-tools++/libproj-static.a lib/ncbi-tools++/libproj.a lib/ncbi-tools++/libproteinkmer-static.a lib/ncbi-tools++/libproteinkmer.a +lib/ncbi-tools++/libpsg_client-static.a +lib/ncbi-tools++/libpsg_client.a lib/ncbi-tools++/libpub-static.a lib/ncbi-tools++/libpub.a lib/ncbi-tools++/libpubmed-static.a |