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| author | wiz <wiz@pkgsrc.org> | 2022-11-16 23:02:14 +0000 |
|---|---|---|
| committer | wiz <wiz@pkgsrc.org> | 2022-11-16 23:02:14 +0000 |
| commit | abdaba2533a496ac624ff6e2b8001de1d436db5f (patch) | |
| tree | 3e37482304998e6e07c7d31634d946d65b27b1a0 /biology/py-cutadapt | |
| parent | cea2575aa6ab14c10aeae99b773c8e6727741551 (diff) | |
| download | pkgsrc-abdaba2533a496ac624ff6e2b8001de1d436db5f.tar.gz | |
py-cutadapt: fix build with python 3.11
Diffstat (limited to 'biology/py-cutadapt')
| -rw-r--r-- | biology/py-cutadapt/Makefile | 9 |
1 files changed, 8 insertions, 1 deletions
diff --git a/biology/py-cutadapt/Makefile b/biology/py-cutadapt/Makefile index 8d30249d51d..94acf348ee8 100644 --- a/biology/py-cutadapt/Makefile +++ b/biology/py-cutadapt/Makefile @@ -1,4 +1,4 @@ -# $NetBSD: Makefile,v 1.9 2022/01/17 09:03:10 adam Exp $ +# $NetBSD: Makefile,v 1.10 2022/11/16 23:02:14 wiz Exp $ DISTNAME= cutadapt-3.5 PKGNAME= ${PYPKGPREFIX}-${DISTNAME} @@ -11,6 +11,8 @@ COMMENT= Find and remove adapter sequences, primers, poly-A tails, etc LICENSE= mit TOOL_DEPENDS+= ${PYPKGPREFIX}-setuptools_scm-[0-9]*:../../devel/py-setuptools_scm +# needed for python 3.11 as of 3.5 release +TOOL_DEPENDS+= ${PYPKGPREFIX}-cython-[0-9]*:../../devel/py-cython DEPENDS+= ${PYPKGPREFIX}-dnaio>=0.5.0:../../biology/py-dnaio DEPENDS+= ${PYPKGPREFIX}-xopen>=1.0.0:../../devel/py-xopen @@ -18,6 +20,11 @@ PYTHON_VERSIONS_INCOMPATIBLE= 27 # py-xopen USE_PKG_RESOURCES= yes +# these files do not support python 3.11 in the 3.5 release +post-extract: + ${RM} ${WRKSRC}/src/cutadapt/*.c + cd ${WRKSRC} && cythonize-${PYVERSSUFFIX} src/cutadapt/*.pyx + post-install: cd ${DESTDIR}${PREFIX}/bin && \ ${MV} cutadapt cutadapt-${PYVERSSUFFIX} || ${TRUE} |