diff options
| author | bacon <bacon@pkgsrc.org> | 2022-02-26 23:11:43 +0000 |
|---|---|---|
| committer | bacon <bacon@pkgsrc.org> | 2022-02-26 23:11:43 +0000 |
| commit | bc1541e33037a601de5fbd7b2a731871486357ea (patch) | |
| tree | cd21e6079658b6f3044538db657cc70f637f77f0 /biology/samtools | |
| parent | 0437efa0e1a9996ffe3bd1599fe39181b6f1abcf (diff) | |
| download | pkgsrc-bc1541e33037a601de5fbd7b2a731871486357ea.tar.gz | |
biology/samtools: Update to 1.15
Several minor enhancements and bug fixes
Changes: https://github.com/samtools/samtools/tags
Diffstat (limited to 'biology/samtools')
| -rw-r--r-- | biology/samtools/Makefile | 4 | ||||
| -rw-r--r-- | biology/samtools/PLIST | 4 | ||||
| -rw-r--r-- | biology/samtools/distinfo | 8 | ||||
| -rw-r--r-- | biology/samtools/patches/patch-Makefile | 2 |
4 files changed, 10 insertions, 8 deletions
diff --git a/biology/samtools/Makefile b/biology/samtools/Makefile index 78c99151d27..ba3abbf523b 100644 --- a/biology/samtools/Makefile +++ b/biology/samtools/Makefile @@ -1,6 +1,6 @@ -# $NetBSD: Makefile,v 1.13 2021/12/17 15:10:06 bacon Exp $ +# $NetBSD: Makefile,v 1.14 2022/02/26 23:11:43 bacon Exp $ -DISTNAME= samtools-1.14 +DISTNAME= samtools-1.15 CATEGORIES= biology MASTER_SITES= ${MASTER_SITE_GITHUB:=samtools/} diff --git a/biology/samtools/PLIST b/biology/samtools/PLIST index 8bdccfa7edd..be273ec34f6 100644 --- a/biology/samtools/PLIST +++ b/biology/samtools/PLIST @@ -1,4 +1,4 @@ -@comment $NetBSD: PLIST,v 1.4 2021/12/17 15:10:06 bacon Exp $ +@comment $NetBSD: PLIST,v 1.5 2022/02/26 23:11:43 bacon Exp $ bin/ace2sam bin/blast2sam.pl bin/bowtie2sam.pl @@ -28,6 +28,7 @@ man/man1/samtools-bedcov.1 man/man1/samtools-calmd.1 man/man1/samtools-cat.1 man/man1/samtools-collate.1 +man/man1/samtools-consensus.1 man/man1/samtools-coverage.1 man/man1/samtools-depad.1 man/man1/samtools-depth.1 @@ -39,6 +40,7 @@ man/man1/samtools-fixmate.1 man/man1/samtools-flags.1 man/man1/samtools-flagstat.1 man/man1/samtools-fqidx.1 +man/man1/samtools-head.1 man/man1/samtools-idxstats.1 man/man1/samtools-import.1 man/man1/samtools-index.1 diff --git a/biology/samtools/distinfo b/biology/samtools/distinfo index 3a3b5746a1d..85c5934989c 100644 --- a/biology/samtools/distinfo +++ b/biology/samtools/distinfo @@ -1,6 +1,6 @@ -$NetBSD: distinfo,v 1.7 2021/12/17 15:10:06 bacon Exp $ +$NetBSD: distinfo,v 1.8 2022/02/26 23:11:43 bacon Exp $ -BLAKE2s (samtools-1.14.tar.gz) = 86b0e03b47d62619507b3b3284ac82689caa962da424c4af03f6690113a2ea50 -SHA512 (samtools-1.14.tar.gz) = fafc256fff8d2725b8a8ff4555cdb14aa0d32eec3a9afc6ff8ab7b474deed48f2a108805cc8f020cc3a28eec0d04034784d1af340bf89eb3c5f6ef3f262ac489 -Size (samtools-1.14.tar.gz) = 4933354 bytes +BLAKE2s (samtools-1.15.tar.gz) = b37f18ce7134f921f1e8b5ebb087ad88b387934080742f26708bbecf9ddb5df7 +SHA512 (samtools-1.15.tar.gz) = fad213b6d7eb8885b67642ad7235fb35a923238c13fac7fde501f0d8093fa90d49539e895691bc61a94f6d25e8cdfc4e2c4e94ff0ea91ceee248d5140f561cd6 +Size (samtools-1.15.tar.gz) = 4970205 bytes SHA1 (patch-Makefile) = 3fc1f1d67167c8ca8eff1ed17f7a084ec3d4579d diff --git a/biology/samtools/patches/patch-Makefile b/biology/samtools/patches/patch-Makefile index 6e4eef0df64..ff7a4066605 100644 --- a/biology/samtools/patches/patch-Makefile +++ b/biology/samtools/patches/patch-Makefile @@ -1,4 +1,4 @@ -$NetBSD: patch-Makefile,v 1.3 2021/12/17 15:10:06 bacon Exp $ +$NetBSD: patch-Makefile,v 1.4 2022/02/26 23:11:43 bacon Exp $ # Respect pkgsrc env |