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authorminskim <minskim>2005-11-05 01:47:41 +0000
committerminskim <minskim>2005-11-05 01:47:41 +0000
commit226d2c91210f1cff1eeaaea54f69b4b7db6e2bdf (patch)
tree7bd1dba3967acb31eea2fa958fd49149b88d03da /biology
parent12f8373652c8551cf0198630210d8400a1f04f1b (diff)
downloadpkgsrc-226d2c91210f1cff1eeaaea54f69b4b7db6e2bdf.tar.gz
Import azara from pkgsrc-wip. Packaged by David Price.
Azara is a suite of programs to process and view NMR data.
Diffstat (limited to 'biology')
-rw-r--r--biology/azara/DESCR1
-rw-r--r--biology/azara/Makefile37
-rw-r--r--biology/azara/PLIST26
-rw-r--r--biology/azara/distinfo7
-rw-r--r--biology/azara/patches/patch-aa31
-rw-r--r--biology/azara/patches/patch-ab197
6 files changed, 299 insertions, 0 deletions
diff --git a/biology/azara/DESCR b/biology/azara/DESCR
new file mode 100644
index 00000000000..0b662887d1e
--- /dev/null
+++ b/biology/azara/DESCR
@@ -0,0 +1 @@
+Azara is a suite of programs to process and view NMR data.
diff --git a/biology/azara/Makefile b/biology/azara/Makefile
new file mode 100644
index 00000000000..e0470a55c82
--- /dev/null
+++ b/biology/azara/Makefile
@@ -0,0 +1,37 @@
+# $NetBSD: Makefile,v 1.1.1.1 2005/11/05 01:47:41 minskim Exp $
+#
+
+DISTNAME= azara-2.7-src
+PKGNAME= azara-2.7
+CATEGORIES= biology
+MASTER_SITES= ftp://www.bio.cam.ac.uk/pub/azara/
+
+MAINTAINER= mchittur@cs.nmsu.edu
+HOMEPAGE= http://www.bio.cam.ac.uk/azara/
+COMMENT= Programs to process and view NMR data
+
+WRKSRC= ${WRKDIR}/azara-2.7
+
+MAKEFILE= makefile
+
+do-install:
+.for PROG in azara \
+ bin2asc \
+ combine connect contours \
+ deflate \
+ extract \
+ float2int \
+ int2float \
+ look_at look_byte look_for \
+ mat2par \
+ par2mat peak_find peak_fit plot1 plot2 process project \
+ reflate \
+ slides swap \
+ unblock viewer
+ ${CP} ${WRKSRC}/bin/${PROG} ${PREFIX}/bin
+.endfor
+
+.include "../../graphics/glut/buildlink3.mk"
+.include "../../mk/motif.buildlink3.mk"
+.include "../../mk/x11.buildlink3.mk"
+.include "../../mk/bsd.pkg.mk"
diff --git a/biology/azara/PLIST b/biology/azara/PLIST
new file mode 100644
index 00000000000..1573221802e
--- /dev/null
+++ b/biology/azara/PLIST
@@ -0,0 +1,26 @@
+@comment $NetBSD: PLIST,v 1.1.1.1 2005/11/05 01:47:41 minskim Exp $
+bin/azara
+bin/bin2asc
+bin/combine
+bin/connect
+bin/contours
+bin/deflate
+bin/extract
+bin/float2int
+bin/int2float
+bin/look_at
+bin/look_byte
+bin/look_for
+bin/mat2par
+bin/par2mat
+bin/peak_find
+bin/peak_fit
+bin/plot1
+bin/plot2
+bin/process
+bin/project
+bin/reflate
+bin/slides
+bin/swap
+bin/unblock
+bin/viewer
diff --git a/biology/azara/distinfo b/biology/azara/distinfo
new file mode 100644
index 00000000000..f1eea5f9649
--- /dev/null
+++ b/biology/azara/distinfo
@@ -0,0 +1,7 @@
+$NetBSD: distinfo,v 1.1.1.1 2005/11/05 01:47:41 minskim Exp $
+
+SHA1 (azara-2.7-src.tar.gz) = 53caa85953f700cdc4ec9ef26d2bb7d9448b77b0
+RMD160 (azara-2.7-src.tar.gz) = 2426102dbb87984f88ec1266b72d2e307484af0c
+Size (azara-2.7-src.tar.gz) = 565272 bytes
+SHA1 (patch-aa) = 1066c1e1b070020bbdd18439b27e15d359dd5e69
+SHA1 (patch-ab) = 46e512fba5b00cb36cd2b2d50db4919875124309
diff --git a/biology/azara/patches/patch-aa b/biology/azara/patches/patch-aa
new file mode 100644
index 00000000000..f6389026444
--- /dev/null
+++ b/biology/azara/patches/patch-aa
@@ -0,0 +1,31 @@
+$NetBSD: patch-aa,v 1.1.1.1 2005/11/05 01:47:41 minskim Exp $
+
+--- ENVIRONMENT.orig 2002-11-01 07:10:11.000000000 -0700
++++ ENVIRONMENT
+@@ -40,14 +40,14 @@ XPM_FLAG = -DUSE_XPM
+ XPM_LIB = -lXpm
+
+ # X11 libraries
+-X11_LIB = -lX11 -lPW
++#X11_LIB = -lX11 -lPW
+ # non-SGI platforms do not need PW
+-#X11_LIB = -lX11
++X11_LIB = -lX11
+ # below uses shared libraries
+ #X11_LIB = -lX11_s -lPW
+
+ # Motif libraries
+-MOTIF_LIB = -lXm -lXt
++MOTIF_LIB = -L${X11BASE}/lib -Wl,-R${X11BASE}/lib -L${PREFIX}/lib -Wl,-R${PREFIX}/lib -lXm -lXt
+ # below uses shared libraries
+ #MOTIF_LIB = -lXm_s -lXt_s
+
+@@ -58,7 +58,7 @@ MOTIF_LIB = -lXm -lXt
+ #GL_LIB_DIR = $(X11_LIB_DIR) -I/usr/local/mesa/lib
+
+ # GL libraries
+-GL_LIB = -lglut -lGLU -lGL -lXmu -lX11 -lXext
++GL_LIB = -L${X11BASE}/lib -Wl,-R${X11BASE}/lib -L${PREFIX}/lib -Wl,-R${PREFIX}/lib -lglut -lGLU -lGL -lXmu -lXi -lX11 -lXext
+
+ # set up ENDIAN_FLAG as required
+ # WRITE_ENDIAN_PAR if want endianess written to par file
diff --git a/biology/azara/patches/patch-ab b/biology/azara/patches/patch-ab
new file mode 100644
index 00000000000..8a6bb31ce55
--- /dev/null
+++ b/biology/azara/patches/patch-ab
@@ -0,0 +1,197 @@
+$NetBSD: patch-ab,v 1.1.1.1 2005/11/05 01:47:41 minskim Exp $
+
+--- help/makefile.orig 2002-11-01 05:27:27.000000000 -0700
++++ help/makefile
+@@ -37,97 +37,97 @@ globals:
+ .c.o:; $(CC) -c $(CFLAGS) $<
+
+ hlp:
+- txt2hlp azara
+- txt2hlp combine
+- txt2hlp components
+- txt2hlp connect
+- txt2hlp contours
+- txt2hlp deflate
+- txt2hlp extract
+- txt2hlp peak_find
+- txt2hlp peak_fit
+- txt2hlp plot1
+- txt2hlp plot2
+- txt2hlp process
+- txt2hlp project
+- txt2hlp slides
+- txt2hlp reflate
+- txt2hlp unblock
+- txt2hlp viewer
+- txt2hlp plot2/baseline
+- txt2hlp plot2/data
+- txt2hlp plot2/extract
+- txt2hlp plot2/levels
+- txt2hlp plot2/object
+- txt2hlp plot2/output
+- txt2hlp plot2/peak
+- txt2hlp plot2/peaks
+- txt2hlp plot2/phase
+- txt2hlp plot2/property
+- txt2hlp plot2/region
+- txt2hlp plot2/rowcol
+- txt2hlp plot2/save
+- txt2hlp plot2/tracking
+- txt2hlp plot1/button
+- txt2hlp plot1/data
+- txt2hlp plot1/object
+- txt2hlp plot1/output
+- txt2hlp plot1/property
+- txt2hlp plot1/region
+- txt2hlp plot1/slider
+- txt2hlp plot1/text
++ ./txt2hlp azara
++ ./txt2hlp combine
++ ./txt2hlp components
++ ./txt2hlp connect
++ ./txt2hlp contours
++ ./txt2hlp deflate
++ ./txt2hlp extract
++ ./txt2hlp peak_find
++ ./txt2hlp peak_fit
++ ./txt2hlp plot1
++ ./txt2hlp plot2
++ ./txt2hlp process
++ ./txt2hlp project
++ ./txt2hlp slides
++ ./txt2hlp reflate
++ ./txt2hlp unblock
++ ./txt2hlp viewer
++ ./txt2hlp plot2/baseline
++ ./txt2hlp plot2/data
++ ./txt2hlp plot2/extract
++ ./txt2hlp plot2/levels
++ ./txt2hlp plot2/object
++ ./txt2hlp plot2/output
++ ./txt2hlp plot2/peak
++ ./txt2hlp plot2/peaks
++ ./txt2hlp plot2/phase
++ ./txt2hlp plot2/property
++ ./txt2hlp plot2/region
++ ./txt2hlp plot2/rowcol
++ ./txt2hlp plot2/save
++ ./txt2hlp plot2/tracking
++ ./txt2hlp plot1/button
++ ./txt2hlp plot1/data
++ ./txt2hlp plot1/object
++ ./txt2hlp plot1/output
++ ./txt2hlp plot1/property
++ ./txt2hlp plot1/region
++ ./txt2hlp plot1/slider
++ ./txt2hlp plot1/text
+
+ html:
+- txt2html azara
+- txt2html combine
+- txt2html components
+- txt2html connect
+- txt2html contours
+- txt2html deflate
+- txt2html extract
+- txt2html peak_find
+- txt2html peak_fit
+- txt2html plot1
+- txt2html plot2
+- txt2html process
+- txt2html project
+- txt2html slides
+- txt2html reflate
+- txt2html unblock
+- txt2html viewer
+- txt2html plot2/baseline
+- txt2html plot2/data
+- txt2html plot2/extract
+- txt2html plot2/levels
+- txt2html plot2/object
+- txt2html plot2/output
+- txt2html plot2/peak
+- txt2html plot2/peaks
+- txt2html plot2/phase
+- txt2html plot2/property
+- txt2html plot2/region
+- txt2html plot2/rowcol
+- txt2html plot2/save
+- txt2html plot2/tracking
+- txt2html plot1/button
+- txt2html plot1/data
+- txt2html plot1/object
+- txt2html plot1/output
+- txt2html plot1/property
+- txt2html plot1/region
+- txt2html plot1/slider
+- txt2html plot1/text
+- txt2html CHANGES
+- txt2html INSTALL
+- txt2html README-2.7
+- txt2html CHANGES-1.0-1
+- txt2html CHANGES-1.0-2
+- txt2html CHANGES-1.0-3
+- txt2html CHANGES-2.0-0
+- txt2html CHANGES-2.5-0
+- txt2html CHANGES-2.6-0
+- txt2html CHANGES-2.7-0
+- txt2html LICENSE
++ ./txt2html azara
++ ./txt2html combine
++ ./txt2html components
++ ./txt2html connect
++ ./txt2html contours
++ ./txt2html deflate
++ ./txt2html extract
++ ./txt2html peak_find
++ ./txt2html peak_fit
++ ./txt2html plot1
++ ./txt2html plot2
++ ./txt2html process
++ ./txt2html project
++ ./txt2html slides
++ ./txt2html reflate
++ ./txt2html unblock
++ ./txt2html viewer
++ ./txt2html plot2/baseline
++ ./txt2html plot2/data
++ ./txt2html plot2/extract
++ ./txt2html plot2/levels
++ ./txt2html plot2/object
++ ./txt2html plot2/output
++ ./txt2html plot2/peak
++ ./txt2html plot2/peaks
++ ./txt2html plot2/phase
++ ./txt2html plot2/property
++ ./txt2html plot2/region
++ ./txt2html plot2/rowcol
++ ./txt2html plot2/save
++ ./txt2html plot2/tracking
++ ./txt2html plot1/button
++ ./txt2html plot1/data
++ ./txt2html plot1/object
++ ./txt2html plot1/output
++ ./txt2html plot1/property
++ ./txt2html plot1/region
++ ./txt2html plot1/slider
++ ./txt2html plot1/text
++ ./txt2html CHANGES
++ ./txt2html INSTALL
++ ./txt2html README-2.7
++ ./txt2html CHANGES-1.0-1
++ ./txt2html CHANGES-1.0-2
++ ./txt2html CHANGES-1.0-3
++ ./txt2html CHANGES-2.0-0
++ ./txt2html CHANGES-2.5-0
++ ./txt2html CHANGES-2.6-0
++ ./txt2html CHANGES-2.7-0
++ ./txt2html LICENSE
+
+ clean:
+ rm *.o
+@@ -135,4 +135,4 @@ clean:
+ realclean:
+ rm *.o
+ rm txt2hlp
+- rm txt2html
++ rM Txt2html
generated by cgit v1.2.3 (git 2.39.1) at 2024-05-22 15:23:42 +0000