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| author | rillig <rillig@pkgsrc.org> | 2020-05-16 19:50:21 +0000 |
|---|---|---|
| committer | rillig <rillig@pkgsrc.org> | 2020-05-16 19:50:21 +0000 |
| commit | 020012e77ccb5631d5d0dc9c807ba7a226861d6f (patch) | |
| tree | 8d179832ae918299efb659cd1afd8d6ff1611c41 /biology | |
| parent | 57f0ce8fe5b61b334a0b38107072270a6bbfd39c (diff) | |
| download | pkgsrc-020012e77ccb5631d5d0dc9c807ba7a226861d6f.tar.gz | |
biology/canu: fix build on NetBSD-8.0-x86_64
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/canu/distinfo | 3 | ||||
| -rw-r--r-- | biology/canu/patches/patch-fastq-utilities_fastqSimulate_C | 19 |
2 files changed, 21 insertions, 1 deletions
diff --git a/biology/canu/distinfo b/biology/canu/distinfo index aa0c188c636..988cef83d0e 100644 --- a/biology/canu/distinfo +++ b/biology/canu/distinfo @@ -1,10 +1,11 @@ -$NetBSD: distinfo,v 1.1 2019/01/07 02:33:17 bacon Exp $ +$NetBSD: distinfo,v 1.2 2020/05/16 19:50:21 rillig Exp $ SHA1 (canu-1.8.tar.gz) = 7dd79415aa5ecb95f05109f0d8d58f7cbfc336e9 RMD160 (canu-1.8.tar.gz) = 78d4872b4034f526037ce225c699debd910bd586 SHA512 (canu-1.8.tar.gz) = 650bc96675f371596f8e7748d4ab2d229f0262bf84cee8fed59af43d534d76095a72e4ba0b4a5ce9f561992268c317964cda2f6c89ee514f4920e2ba47fbc86c Size (canu-1.8.tar.gz) = 2465314 bytes SHA1 (patch-Makefile) = aa83003677cbb12558e438c776402ec48df0598d +SHA1 (patch-fastq-utilities_fastqSimulate_C) = 959beef6e42c8158050958964924813b814b5a11 SHA1 (patch-pipelines_canu_Defaults.pm) = 55a4631d86abb1881b0cc997514d44c536209ea6 SHA1 (patch-pipelines_canu_Execution.pm) = fbb080c06ea5d2393d1835a61771715d2aef0274 SHA1 (patch-utility_objectStore.C) = c8407de79abbaf296f027f704080cc7e878b85f4 diff --git a/biology/canu/patches/patch-fastq-utilities_fastqSimulate_C b/biology/canu/patches/patch-fastq-utilities_fastqSimulate_C new file mode 100644 index 00000000000..aec3fcf9754 --- /dev/null +++ b/biology/canu/patches/patch-fastq-utilities_fastqSimulate_C @@ -0,0 +1,19 @@ +$NetBSD: patch-fastq-utilities_fastqSimulate_C,v 1.1 2020/05/16 19:50:21 rillig Exp $ + +fastq-utilities/fastqSimulate.C:796:31: error: 'UINT64_MAX' was not declared in this scope + uint64 numReads = UINT64_MAX; // Number of reads to generate, constant + +AS_global.h must be included before the headers from the standard library +to get the UINT64_MAX macro. + +--- fastq-utilities/fastqSimulate.C.orig 2018-10-22 16:47:31.000000000 +0000 ++++ fastq-utilities/fastqSimulate.C +@@ -35,6 +35,8 @@ + * full conditions and disclaimers for each license. + */ + ++#include "AS_global.H" ++ + #include <stdio.h> + #include <stdlib.h> + #include <errno.h> |