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authorwiz <wiz@pkgsrc.org>2019-08-11 13:17:48 +0000
committerwiz <wiz@pkgsrc.org>2019-08-11 13:17:48 +0000
commit1e1e978e5bfccb88f11007db5a2f7c954c43a094 (patch)
tree050f3c669fc64c0a0b42ccb845c48008097455c4 /biology
parentb25191da84b54b9852a539f132dd4dfd49755e1e (diff)
downloadpkgsrc-1e1e978e5bfccb88f11007db5a2f7c954c43a094.tar.gz
Bump PKGREVISIONs for perl 5.30.0
Diffstat (limited to 'biology')
-rw-r--r--biology/bcftools/Makefile4
-rw-r--r--biology/bioperl/Makefile4
-rw-r--r--biology/bodr/Makefile4
-rw-r--r--biology/bwa/Makefile4
-rw-r--r--biology/canu/Makefile4
-rw-r--r--biology/cdhit/Makefile4
-rw-r--r--biology/gnome-chemistry-utils/Makefile4
-rw-r--r--biology/gromacs/Makefile4
-rw-r--r--biology/hisat2/Makefile4
-rw-r--r--biology/htslib/Makefile4
-rw-r--r--biology/mpqc/Makefile4
-rw-r--r--biology/mummer/Makefile4
-rw-r--r--biology/ncbi-blast+/Makefile4
-rw-r--r--biology/p5-Bio-ASN1-EntrezGene/Makefile4
-rw-r--r--biology/samtools/Makefile4
-rw-r--r--biology/stacks/Makefile4
16 files changed, 32 insertions, 32 deletions
diff --git a/biology/bcftools/Makefile b/biology/bcftools/Makefile
index 45d28c0a38c..226f9e7aa46 100644
--- a/biology/bcftools/Makefile
+++ b/biology/bcftools/Makefile
@@ -1,7 +1,7 @@
-# $NetBSD: Makefile,v 1.3 2019/04/25 07:32:37 maya Exp $
+# $NetBSD: Makefile,v 1.4 2019/08/11 13:17:59 wiz Exp $
DISTNAME= bcftools-1.9
-PKGREVISION= 1
+PKGREVISION= 2
CATEGORIES= biology
MASTER_SITES= ${MASTER_SITE_GITHUB:=samtools/}
EXTRACT_SUFX= .tar.bz2
diff --git a/biology/bioperl/Makefile b/biology/bioperl/Makefile
index 9dc88e0f412..2cd33b418f7 100644
--- a/biology/bioperl/Makefile
+++ b/biology/bioperl/Makefile
@@ -1,8 +1,8 @@
-# $NetBSD: Makefile,v 1.36 2018/08/22 09:42:59 wiz Exp $
+# $NetBSD: Makefile,v 1.37 2019/08/11 13:17:59 wiz Exp $
DISTNAME= BioPerl-1.007002
PKGNAME= ${DISTNAME:tl}
-PKGREVISION= 1
+PKGREVISION= 2
CATEGORIES= biology perl5
MASTER_SITES= ${MASTER_SITE_PERL_CPAN:=Bio/}
diff --git a/biology/bodr/Makefile b/biology/bodr/Makefile
index 2a50fddf87f..17c1c3714da 100644
--- a/biology/bodr/Makefile
+++ b/biology/bodr/Makefile
@@ -1,8 +1,8 @@
-# $NetBSD: Makefile,v 1.11 2018/08/22 09:42:59 wiz Exp $
+# $NetBSD: Makefile,v 1.12 2019/08/11 13:17:59 wiz Exp $
#
DISTNAME= bodr-9
-PKGREVISION= 8
+PKGREVISION= 9
CATEGORIES= biology
MASTER_SITES= ${MASTER_SITE_SOURCEFORGE:=bodr/}
diff --git a/biology/bwa/Makefile b/biology/bwa/Makefile
index efdb04f05e7..27ce3d6578a 100644
--- a/biology/bwa/Makefile
+++ b/biology/bwa/Makefile
@@ -1,8 +1,8 @@
-# $NetBSD: Makefile,v 1.7 2018/08/22 09:42:59 wiz Exp $
+# $NetBSD: Makefile,v 1.8 2019/08/11 13:17:59 wiz Exp $
DISTNAME= bwa-0.7.17
CATEGORIES= biology
-PKGREVISION= 2
+PKGREVISION= 3
GITHUB_TAG= v${PKGVERSION_NOREV}
MASTER_SITES= ${MASTER_SITE_GITHUB:=lh3/}
diff --git a/biology/canu/Makefile b/biology/canu/Makefile
index 060c7d1ba8c..a8a03ebcf03 100644
--- a/biology/canu/Makefile
+++ b/biology/canu/Makefile
@@ -1,7 +1,7 @@
-# $NetBSD: Makefile,v 1.3 2019/07/01 04:07:57 ryoon Exp $
+# $NetBSD: Makefile,v 1.4 2019/08/11 13:17:59 wiz Exp $
DISTNAME= canu-1.8
-PKGREVISION= 1
+PKGREVISION= 2
CATEGORIES= biology java
MASTER_SITES= ${MASTER_SITE_GITHUB:=marbl/}
GITHUB_TAG= v${PKGVERSION_NOREV}
diff --git a/biology/cdhit/Makefile b/biology/cdhit/Makefile
index 1424a3307ba..f1d15bb0ffe 100644
--- a/biology/cdhit/Makefile
+++ b/biology/cdhit/Makefile
@@ -1,11 +1,11 @@
-# $NetBSD: Makefile,v 1.5 2019/01/13 22:06:42 bacon Exp $
+# $NetBSD: Makefile,v 1.6 2019/08/11 13:18:00 wiz Exp $
#
###########################################################
# Generated by fbsd2pkg #
###########################################################
DISTNAME= cdhit-4.6.4
-PKGREVISION= 2
+PKGREVISION= 3
CATEGORIES= biology
MASTER_SITES= ${MASTER_SITE_GITHUB:=weizhongli/}
GITHUB_TAG= V${PKGVERSION_NOREV}
diff --git a/biology/gnome-chemistry-utils/Makefile b/biology/gnome-chemistry-utils/Makefile
index c99c505a139..050508ce786 100644
--- a/biology/gnome-chemistry-utils/Makefile
+++ b/biology/gnome-chemistry-utils/Makefile
@@ -1,8 +1,8 @@
-# $NetBSD: Makefile,v 1.39 2019/07/21 22:24:29 wiz Exp $
+# $NetBSD: Makefile,v 1.40 2019/08/11 13:18:00 wiz Exp $
#
DISTNAME= gnome-chemistry-utils-0.12.13
-PKGREVISION= 28
+PKGREVISION= 29
CATEGORIES= biology
MASTER_SITES= http://download-mirror.savannah.gnu.org/releases/gchemutils/0.12/
EXTRACT_SUFX= .tar.bz2
diff --git a/biology/gromacs/Makefile b/biology/gromacs/Makefile
index f06f2deda20..11a84a9d4ed 100644
--- a/biology/gromacs/Makefile
+++ b/biology/gromacs/Makefile
@@ -1,8 +1,8 @@
-# $NetBSD: Makefile,v 1.17 2018/08/22 09:42:59 wiz Exp $
+# $NetBSD: Makefile,v 1.18 2019/08/11 13:18:00 wiz Exp $
#
DISTNAME= gromacs-4.5.5
-PKGREVISION= 7
+PKGREVISION= 8
CATEGORIES= biology
MASTER_SITES= ftp://ftp.gromacs.org/pub/gromacs/
diff --git a/biology/hisat2/Makefile b/biology/hisat2/Makefile
index a1fea15b3d3..5ad25210d0f 100644
--- a/biology/hisat2/Makefile
+++ b/biology/hisat2/Makefile
@@ -1,7 +1,7 @@
-# $NetBSD: Makefile,v 1.2 2019/04/25 07:32:37 maya Exp $
+# $NetBSD: Makefile,v 1.3 2019/08/11 13:18:00 wiz Exp $
DISTNAME= hisat2-2.1.0.23
-PKGREVISION= 1
+PKGREVISION= 2
CATEGORIES= biology
MASTER_SITES= ${MASTER_SITE_GITHUB:=infphilo/}
GITHUB_TAG= 20f333e2cfe7ff4d1362b248912893e2644683d7
diff --git a/biology/htslib/Makefile b/biology/htslib/Makefile
index 17a9b8f3fb3..0e712fb5356 100644
--- a/biology/htslib/Makefile
+++ b/biology/htslib/Makefile
@@ -1,7 +1,7 @@
-# $NetBSD: Makefile,v 1.7 2019/07/20 22:46:10 wiz Exp $
+# $NetBSD: Makefile,v 1.8 2019/08/11 13:18:00 wiz Exp $
DISTNAME= htslib-1.9
-PKGREVISION= 3
+PKGREVISION= 4
CATEGORIES= biology
MASTER_SITES= ${MASTER_SITE_GITHUB:=samtools/}
EXTRACT_SUFX= .tar.bz2
diff --git a/biology/mpqc/Makefile b/biology/mpqc/Makefile
index 3230981ee34..bf6d7574692 100644
--- a/biology/mpqc/Makefile
+++ b/biology/mpqc/Makefile
@@ -1,7 +1,7 @@
-# $NetBSD: Makefile,v 1.14 2018/08/22 09:42:59 wiz Exp $
+# $NetBSD: Makefile,v 1.15 2019/08/11 13:18:00 wiz Exp $
DISTNAME= mpqc-2.3.1
-PKGREVISION= 7
+PKGREVISION= 8
CATEGORIES= biology
MASTER_SITES= ${MASTER_SITE_SOURCEFORGE:=mpqc/}
EXTRACT_SUFX= .tar.bz2
diff --git a/biology/mummer/Makefile b/biology/mummer/Makefile
index fe54517afc1..79617a68c37 100644
--- a/biology/mummer/Makefile
+++ b/biology/mummer/Makefile
@@ -1,9 +1,9 @@
-# $NetBSD: Makefile,v 1.25 2018/08/22 09:42:59 wiz Exp $
+# $NetBSD: Makefile,v 1.26 2019/08/11 13:18:00 wiz Exp $
#
DISTNAME= MUMmer3.20
PKGNAME= mummer-3.20
-PKGREVISION= 6
+PKGREVISION= 7
CATEGORIES= biology
MASTER_SITES= ${MASTER_SITE_SOURCEFORGE:=mummer/}
diff --git a/biology/ncbi-blast+/Makefile b/biology/ncbi-blast+/Makefile
index 0642cbdb1f5..f92396e7bb6 100644
--- a/biology/ncbi-blast+/Makefile
+++ b/biology/ncbi-blast+/Makefile
@@ -1,8 +1,8 @@
-# $NetBSD: Makefile,v 1.10 2019/07/20 22:46:10 wiz Exp $
+# $NetBSD: Makefile,v 1.11 2019/08/11 13:18:00 wiz Exp $
DISTNAME= ncbi-blast-2.8.1+-src
PKGNAME= ${DISTNAME:S/+-src//:S/blast/blast+/}
-PKGREVISION= 4
+PKGREVISION= 5
CATEGORIES= biology
MASTER_SITES= https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST/ \
https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/${PKGVERSION_NOREV}/
diff --git a/biology/p5-Bio-ASN1-EntrezGene/Makefile b/biology/p5-Bio-ASN1-EntrezGene/Makefile
index da73c7dde6a..d51ab6b6f79 100644
--- a/biology/p5-Bio-ASN1-EntrezGene/Makefile
+++ b/biology/p5-Bio-ASN1-EntrezGene/Makefile
@@ -1,8 +1,8 @@
-# $NetBSD: Makefile,v 1.8 2019/06/30 20:14:14 nia Exp $
+# $NetBSD: Makefile,v 1.9 2019/08/11 13:18:01 wiz Exp $
DISTNAME= Bio-ASN1-EntrezGene-1.72
PKGNAME= p5-${DISTNAME}
-PKGREVISION= 1
+PKGREVISION= 2
CATEGORIES= biology perl5
MASTER_SITES= ${MASTER_SITE_PERL_CPAN:=Bio/}
diff --git a/biology/samtools/Makefile b/biology/samtools/Makefile
index d82a860333a..b6cdf658fb9 100644
--- a/biology/samtools/Makefile
+++ b/biology/samtools/Makefile
@@ -1,7 +1,7 @@
-# $NetBSD: Makefile,v 1.5 2019/04/25 07:32:37 maya Exp $
+# $NetBSD: Makefile,v 1.6 2019/08/11 13:18:01 wiz Exp $
DISTNAME= samtools-1.9
-PKGREVISION= 1
+PKGREVISION= 2
CATEGORIES= biology
MASTER_SITES= ${MASTER_SITE_GITHUB:=samtools/}
EXTRACT_SUFX= .tar.bz2
diff --git a/biology/stacks/Makefile b/biology/stacks/Makefile
index 6ddb4192131..b4b7aea771e 100644
--- a/biology/stacks/Makefile
+++ b/biology/stacks/Makefile
@@ -1,7 +1,7 @@
-# $NetBSD: Makefile,v 1.2 2019/04/25 07:32:37 maya Exp $
+# $NetBSD: Makefile,v 1.3 2019/08/11 13:18:01 wiz Exp $
DISTNAME= stacks-2.2
-PKGREVISION= 1
+PKGREVISION= 2
CATEGORIES= biology
MASTER_SITES= http://catchenlab.life.illinois.edu/stacks/source/