diff options
| author | bacon <bacon@pkgsrc.org> | 2021-12-17 17:57:55 +0000 |
|---|---|---|
| committer | bacon <bacon@pkgsrc.org> | 2021-12-17 17:57:55 +0000 |
| commit | 4ec36670551f46b00d3bf7d05f26ce305938e335 (patch) | |
| tree | e9d76fc1722e1f0737588287f928cba1232ac264 /biology | |
| parent | 5d9bc86651e88b03dd3c0de643e3bc863cc654de (diff) | |
| download | pkgsrc-4ec36670551f46b00d3bf7d05f26ce305938e335.tar.gz | |
biology/cdhit: Update to 4.8.1
Add support for gzipped input
Changes: https://github.com/weizhongli/cdhit/releases
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/cdhit/Makefile | 22 | ||||
| -rw-r--r-- | biology/cdhit/PLIST | 6 | ||||
| -rw-r--r-- | biology/cdhit/distinfo | 8 |
3 files changed, 21 insertions, 15 deletions
diff --git a/biology/cdhit/Makefile b/biology/cdhit/Makefile index 329b7e2f149..f1f0d963649 100644 --- a/biology/cdhit/Makefile +++ b/biology/cdhit/Makefile @@ -1,11 +1,6 @@ -# $NetBSD: Makefile,v 1.8 2021/05/24 19:49:10 wiz Exp $ -# -########################################################### -# Generated by fbsd2pkg # -########################################################### - -DISTNAME= cdhit-4.6.4 -PKGREVISION= 5 +# $NetBSD: Makefile,v 1.9 2021/12/17 17:57:55 bacon Exp $ + +DISTNAME= cdhit-4.8.1 CATEGORIES= biology MASTER_SITES= ${MASTER_SITE_GITHUB:=weizhongli/} GITHUB_TAG= V${PKGVERSION_NOREV} @@ -26,7 +21,7 @@ SUBST_CLASSES+= compiler SUBST_STAGE.compiler= pre-configure SUBST_MESSAGE.compiler= Fixing hardcoded compiler name SUBST_FILES.compiler= ${MAKE_FILE} -SUBST_SED.compiler= -e 's|g++|${CXX:Q}|g' +SUBST_SED.compiler= -e 's|g++|'${CXX:Q}'|g' SUBST_CLASSES+= bash SUBST_STAGE.bash= pre-configure @@ -34,7 +29,13 @@ SUBST_MESSAGE.bash= Fixing bash path SUBST_FILES.bash= cd-hit-2d-para.pl cd-hit-para.pl SUBST_SED.bash= -e 's|/bin/bash|${PREFIX}/bin/bash|g' -MAKE_FLAGS+= openmp=yes PREFIX=${DESTDIR}${PREFIX}/bin +MAKE_FLAGS+= PREFIX=${DESTDIR}${PREFIX}/bin + +.include "../../mk/bsd.prefs.mk" + +.if ${OPSYS} == "Darwin" +MAKE_FLAGS+= openmp=no +.endif DOCDIR= ${PREFIX}/share/doc/cdhit INSTALLATION_DIRS+= bin ${DOCDIR} @@ -42,4 +43,5 @@ INSTALLATION_DIRS+= bin ${DOCDIR} post-install: ${INSTALL_DATA} ${WRKSRC}/doc/cdhit-user-guide.pdf ${DESTDIR}${DOCDIR} +.include "../../devel/zlib/buildlink3.mk" .include "../../mk/bsd.pkg.mk" diff --git a/biology/cdhit/PLIST b/biology/cdhit/PLIST index 4dc806a7615..66f14b99269 100644 --- a/biology/cdhit/PLIST +++ b/biology/cdhit/PLIST @@ -1,8 +1,10 @@ -@comment $NetBSD: PLIST,v 1.1 2015/10/12 16:48:08 leot Exp $ +@comment $NetBSD: PLIST,v 1.2 2021/12/17 17:57:55 bacon Exp $ +bin/FET.pl bin/cd-hit bin/cd-hit-2d bin/cd-hit-2d-para.pl bin/cd-hit-454 +bin/cd-hit-clstr_2_blm8.pl bin/cd-hit-div bin/cd-hit-div.pl bin/cd-hit-est @@ -12,6 +14,8 @@ bin/clstr2tree.pl bin/clstr2txt.pl bin/clstr2xml.pl bin/clstr_cut.pl +bin/clstr_list.pl +bin/clstr_list_sort.pl bin/clstr_merge.pl bin/clstr_merge_noorder.pl bin/clstr_quality_eval.pl diff --git a/biology/cdhit/distinfo b/biology/cdhit/distinfo index 85fdef6bc99..9e0375762c9 100644 --- a/biology/cdhit/distinfo +++ b/biology/cdhit/distinfo @@ -1,5 +1,5 @@ -$NetBSD: distinfo,v 1.4 2021/10/26 10:03:38 nia Exp $ +$NetBSD: distinfo,v 1.5 2021/12/17 17:57:55 bacon Exp $ -BLAKE2s (cdhit-4.6.4.tar.gz) = bb6cdf9becde665d460c96beaa44f23c617c606e133a4094b162335bb57bf35a -SHA512 (cdhit-4.6.4.tar.gz) = 01e4de21643667d943055a8dd3447610a57d6e0aac2f7a8133543c5d2c50b60e3a164accaf3131770b679553ec3c6863bd20ae2a57870de142282311b46c567d -Size (cdhit-4.6.4.tar.gz) = 1148426 bytes +BLAKE2s (cdhit-4.8.1.tar.gz) = 3660fc912a66ed9ce75ea07c913271e3a63b8e4050a2c26e9a99ba4e4ff919be +SHA512 (cdhit-4.8.1.tar.gz) = 28f350c67079f000b4102126a29d2eed110c636fb32a8a53699b60e6f3447348ea3838fe87a4dd952895d62491298394a314254e91036f6a23b1956b1e237a64 +Size (cdhit-4.8.1.tar.gz) = 945639 bytes |