Create directories before installing files into them.

12 files changed, 29 insertions, 12 deletions

diff --git a/biology/coalesce/Makefile b/biology/coalesce/Makefile
index 984ed61b1cc..85d25fbd57e 100644
--- a/biology/coalesce/Makefile
+++ b/biology/coalesce/Makefile
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.5 2005/04/11 21:45:00 tv Exp $
+# $NetBSD: Makefile,v 1.6 2005/06/16 06:57:40 jlam Exp $
 #
 
 DISTNAME=	coalesce1.5b
@@ -18,6 +18,8 @@ EXDIR=		${PREFIX}/share/examples/coalesce
 DOCFILES=	coalesce.doc errors.doc readme
 EXFILES=	bestree infile intree outfile parmfile seedfile
 
+INSTALLATION_DIRS=	bin
+
 do-install:
 	${INSTALL_DATA_DIR} ${DOCDIR}
 	${INSTALL_DATA_DIR} ${EXDIR}
diff --git a/biology/fastDNAml/Makefile b/biology/fastDNAml/Makefile
index 3ca124a921e..ef7ec12fc43 100644
--- a/biology/fastDNAml/Makefile
+++ b/biology/fastDNAml/Makefile
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.7 2005/05/07 20:55:26 kristerw Exp $
+# $NetBSD: Makefile,v 1.8 2005/06/16 06:57:40 jlam Exp $
 
 DISTNAME=	fastDNAml_1.2.2
 PKGNAME=	fastDNAml-1.2.2
@@ -11,6 +11,8 @@ COMMENT=	Program derived from Joseph Felsenstein's version 3.3 DNAML
 
 WRKSRC=		${WRKDIR}/${DISTNAME}/source
 
+INSTALLATION_DIRS=	bin
+
 do-install:
 	${INSTALL_PROGRAM} ${WRKSRC}/fastDNAml ${PREFIX}/bin
 .for SCRIPT in ae2dnaml bootstrap categories categories_file		\
diff --git a/biology/fluctuate/Makefile b/biology/fluctuate/Makefile
index 575649ceee1..1769b26eb68 100644
--- a/biology/fluctuate/Makefile
+++ b/biology/fluctuate/Makefile
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.5 2005/04/11 21:45:00 tv Exp $
+# $NetBSD: Makefile,v 1.6 2005/06/16 06:57:40 jlam Exp $
 #
 
 DISTNAME=	fluctuate1.4.src.doc
@@ -18,6 +18,8 @@ EXDIR=		${PREFIX}/share/examples/fluctuate
 DOCFILES=	fluctuate.doc errors.doc
 EXFILES=	bestree infile outfile
 
+INSTALLATION_DIRS=	bin
+
 do-install:
 	${INSTALL_PROGRAM} ${WRKSRC}/fluctuate ${PREFIX}/bin/
 	${INSTALL_DATA_DIR} ${DOCDIR}
diff --git a/biology/genesplicer/Makefile b/biology/genesplicer/Makefile
index 111b9c69d89..537a0d4527a 100644
--- a/biology/genesplicer/Makefile
+++ b/biology/genesplicer/Makefile
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.5 2005/05/23 08:56:25 rillig Exp $
+# $NetBSD: Makefile,v 1.6 2005/06/16 06:57:40 jlam Exp $
 #
 
 DISTNAME=		GeneSplicer
@@ -16,6 +16,7 @@ EXAMPLES=		arabidopsis drosophila malaria pyoelii human rice \
 			training_data_sets/Human
 MAKEFILE=		makefile
 WRKSRC=			${WRKDIR}/GeneSplicer/sources
+INSTALLATION_DIRS=	bin
 
 do-install:
 	${INSTALL_PROGRAM} ${WRKSRC}/genesplicer ${PREFIX}/bin
diff --git a/biology/glimmer/Makefile b/biology/glimmer/Makefile
index 773b35c96f6..2fa2ae41cd4 100644
--- a/biology/glimmer/Makefile
+++ b/biology/glimmer/Makefile
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.6 2005/04/11 21:45:00 tv Exp $
+# $NetBSD: Makefile,v 1.7 2005/06/16 06:57:40 jlam Exp $
 #
 
 DISTNAME=		glimmer213
@@ -11,6 +11,7 @@ HOMEPAGE=		ftp://ftp.tigr.org/pub/software/Glimmer/
 COMMENT=		System for finding genes in microbial DNA
 
 WRKSRC=                 ${WRKDIR}/glimmer2.13
+INSTALLATION_DIRS=	bin
 
 do-install:
 .for PROGRAM in adjust anomaly build-icm check codon-usage compare-lists \
diff --git a/biology/mummer/Makefile b/biology/mummer/Makefile
index ee0dd58b935..1d3f67d4bb8 100644
--- a/biology/mummer/Makefile
+++ b/biology/mummer/Makefile
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.6 2005/05/22 20:07:40 jlam Exp $
+# $NetBSD: Makefile,v 1.7 2005/06/16 06:57:40 jlam Exp $
 #
 
 DISTNAME=		MUMmer3.15
@@ -14,6 +14,7 @@ WRKSRC=			${WRKDIR}/${DISTNAME}
 USE_TOOLS+=		gmake
 
 MAKE_ENV+=		SH="${SH}"
+INSTALLATION_DIRS=	bin
 
 do-install:
 .for PROGRAM in annotate combineMUMs gaps mgaps mummer repeat-match 	  \
diff --git a/biology/nut/Makefile b/biology/nut/Makefile
index 2daf8e5e8b3..e3ac5a37657 100644
--- a/biology/nut/Makefile
+++ b/biology/nut/Makefile
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.19 2005/05/22 20:07:40 jlam Exp $
+# $NetBSD: Makefile,v 1.20 2005/06/16 06:57:40 jlam Exp $
 
 DISTNAME=	nut-10.18
 CATEGORIES=	biology
@@ -12,6 +12,8 @@ COMMENT=	Record what you eat and analyze your meals
 BUILD_TARGET=	nut
 USE_TOOLS+=	gmake
 
+INSTALLATION_DIRS=	bin man/man1
+
 do-install:
 	${INSTALL_PROGRAM} ${WRKSRC}/nut ${PREFIX}/bin
 	${INSTALL_DATA_DIR} ${PREFIX}/share/nut
diff --git a/biology/pdbalign/Makefile b/biology/pdbalign/Makefile
index e91b270d53c..b0c74d6eebb 100644
--- a/biology/pdbalign/Makefile
+++ b/biology/pdbalign/Makefile
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.2 2004/01/20 12:08:40 agc Exp $
+# $NetBSD: Makefile,v 1.3 2005/06/16 06:57:40 jlam Exp $
 #
 
 DISTNAME=		pdbalign
@@ -11,6 +11,7 @@ HOMEPAGE=               #empty
 COMMENT=		Prediction of Protein Secondary Structure and Active Sites
 
 WRKSRC=			${WRKDIR}
+INSTALLATION_DIRS=	bin
 
 do-install:
 	${INSTALL_PROGRAM} ${WRKSRC}/pdbalign ${PREFIX}/bin
diff --git a/biology/phylip/Makefile b/biology/phylip/Makefile
index eb9edb42999..93854fd3b55 100644
--- a/biology/phylip/Makefile
+++ b/biology/phylip/Makefile
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.10 2005/06/01 18:02:40 jlam Exp $
+# $NetBSD: Makefile,v 1.11 2005/06/16 06:57:40 jlam Exp $
 
 DISTNAME=	phylip-3.61
 CATEGORIES=	biology
@@ -14,6 +14,8 @@ NO_BIN_ON_CDROM=	${RESTRICTED}
 
 WRKSRC=		${WRKDIR}/${DISTNAME}/src
 
+INSTALLATION_DIRS=	bin
+
 .include "../../mk/x11.buildlink3.mk"
 
 do-install:
diff --git a/biology/profit/Makefile b/biology/profit/Makefile
index c6536b01a52..5a9ec5c0f26 100644
--- a/biology/profit/Makefile
+++ b/biology/profit/Makefile
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.7 2005/04/11 21:45:01 tv Exp $
+# $NetBSD: Makefile,v 1.8 2005/06/16 06:57:41 jlam Exp $
 #
 
 DISTNAME=		profit
@@ -13,6 +13,7 @@ COMMENT=		Performs least squares fits of two protein structures
 DIST_SUBDIR=		${DISTNAME}
 BUILD_TARGET=		${DISTNAME}
 WRKSRC=			${WRKDIR}/ProFitV2.2/src
+INSTALLATION_DIRS=	bin
 
 do-install:
 	${INSTALL_PROGRAM} ${WRKSRC}/profit ${PREFIX}/bin
diff --git a/biology/stride/Makefile b/biology/stride/Makefile
index 703c6df68a7..03e990d1d22 100644
--- a/biology/stride/Makefile
+++ b/biology/stride/Makefile
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.5 2005/04/11 21:45:01 tv Exp $
+# $NetBSD: Makefile,v 1.6 2005/06/16 06:57:41 jlam Exp $
 #
 
 DISTNAME=		stride
@@ -11,6 +11,7 @@ HOMEPAGE=		http://wolf.bi.umist.ac.uk/unix/stride.html
 COMMENT=		Protein secondary structure assignment from atomic coordinates
 
 WRKSRC=			${WRKDIR}
+INSTALLATION_DIRS=	bin
 
 do-install:
 	${INSTALL_PROGRAM} ${WRKDIR}/stride ${PREFIX}/bin
diff --git a/biology/xylem/Makefile b/biology/xylem/Makefile
index 6aba269cab7..8e7bab5d9d6 100644
--- a/biology/xylem/Makefile
+++ b/biology/xylem/Makefile
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.4 2005/04/11 21:45:01 tv Exp $
+# $NetBSD: Makefile,v 1.5 2005/06/16 06:57:41 jlam Exp $
 #
 
 DISTNAME=		xylem.1.8.7
@@ -12,6 +12,7 @@ HOMEPAGE=		http://home.cc.umanitoba.ca/~psgendb/XYLEM.html
 COMMENT=		Tools for manipulation of genetic databases
 
 WRKSRC=                 ${WRKDIR}/xylem/src.c
+INSTALLATION_DIRS=	bin
 
 do-configure:
 	${CP} ${WRKSRC}/p2c.h.standard ${WRKSRC}/p2c.h