summaryrefslogtreecommitdiff
path: root/biology
diff options
context:
space:
mode:
authortv <tv@pkgsrc.org>2005-04-11 21:44:48 +0000
committertv <tv@pkgsrc.org>2005-04-11 21:44:48 +0000
commit915c0d730df55e4ddf04b9d9e07f7603057636e4 (patch)
tree2d8b7b078f159a824fcd53503d6096a145f0f177 /biology
parent7453f22416c9b37d26567190d2eaf0f2af6b40fd (diff)
downloadpkgsrc-915c0d730df55e4ddf04b9d9e07f7603057636e4.tar.gz
Remove USE_BUILDLINK3 and NO_BUILDLINK; these are no longer used.
Diffstat (limited to 'biology')
-rw-r--r--biology/bioperl/Makefile3
-rw-r--r--biology/chemtool/Makefile3
-rw-r--r--biology/coalesce/Makefile3
-rw-r--r--biology/fluctuate/Makefile3
-rw-r--r--biology/genesplicer/Makefile3
-rw-r--r--biology/glimmer/Makefile3
-rw-r--r--biology/gp/Makefile3
-rw-r--r--biology/hmmer/Makefile3
-rw-r--r--biology/mummer/Makefile3
-rw-r--r--biology/nut/Makefile3
-rw-r--r--biology/profit/Makefile3
-rw-r--r--biology/rasmol/Makefile3
-rw-r--r--biology/sewer/Makefile3
-rw-r--r--biology/stride/Makefile3
-rw-r--r--biology/xylem/Makefile3
15 files changed, 15 insertions, 30 deletions
diff --git a/biology/bioperl/Makefile b/biology/bioperl/Makefile
index 13af0d491aa..8c91d929c76 100644
--- a/biology/bioperl/Makefile
+++ b/biology/bioperl/Makefile
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.10 2004/04/11 03:50:56 snj Exp $
+# $NetBSD: Makefile,v 1.11 2005/04/11 21:45:00 tv Exp $
#
DISTNAME= bioperl-0.7.0
@@ -9,7 +9,6 @@ MAINTAINER= tech-pkg@NetBSD.org
HOMEPAGE= http://bioperl.org/
COMMENT= Perl tools for computational molecular biology
-USE_BUILDLINK3= YES
PERL5_PACKLIST= ${PERL5_SITEARCH}/auto/Bio/.packlist
post-install:
diff --git a/biology/chemtool/Makefile b/biology/chemtool/Makefile
index 69bc4f8bb15..ed39259e709 100644
--- a/biology/chemtool/Makefile
+++ b/biology/chemtool/Makefile
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.23 2004/10/03 00:13:12 tv Exp $
+# $NetBSD: Makefile,v 1.24 2005/04/11 21:45:00 tv Exp $
DISTNAME= chemtool-1.6
PKGREVISION= 1
@@ -11,7 +11,6 @@ COMMENT= Program for drawing organic molecules
PKG_INSTALLATION_TYPES= overwrite pkgviews
-USE_BUILDLINK3= yes
USE_PKGLOCALEDIR= yes
USE_X11= yes
GNU_CONFIGURE= yes
diff --git a/biology/coalesce/Makefile b/biology/coalesce/Makefile
index a1202ba6602..984ed61b1cc 100644
--- a/biology/coalesce/Makefile
+++ b/biology/coalesce/Makefile
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.4 2004/12/03 15:14:51 wiz Exp $
+# $NetBSD: Makefile,v 1.5 2005/04/11 21:45:00 tv Exp $
#
DISTNAME= coalesce1.5b
@@ -11,7 +11,6 @@ HOMEPAGE= http://evolution.genetics.washington.edu/lamarc/coalesce.html
COMMENT= Estimates effective population size and mutation rate
WRKSRC= ${WRKDIR}/coalesce1.5beta
-USE_BUILDLINK3= YES
BUILD_TARGET= coalesce
DOCDIR= ${PREFIX}/share/doc/coalesce
diff --git a/biology/fluctuate/Makefile b/biology/fluctuate/Makefile
index 30b19a9cbbf..575649ceee1 100644
--- a/biology/fluctuate/Makefile
+++ b/biology/fluctuate/Makefile
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.4 2004/12/03 15:14:51 wiz Exp $
+# $NetBSD: Makefile,v 1.5 2005/04/11 21:45:00 tv Exp $
#
DISTNAME= fluctuate1.4.src.doc
@@ -11,7 +11,6 @@ HOMEPAGE= http://evolution.genetics.washington.edu/lamarc/fluctuate.html
COMMENT= Estimation of population growth rate
WRKSRC= ${WRKDIR}/fluctuate1.4
-USE_BUILDLINK3= YES
BUILD_TARGET= fluctuate
DOCDIR= ${PREFIX}/share/doc/fluctuate
diff --git a/biology/genesplicer/Makefile b/biology/genesplicer/Makefile
index 5f887d77526..8fa53289b44 100644
--- a/biology/genesplicer/Makefile
+++ b/biology/genesplicer/Makefile
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.3 2004/04/11 04:00:47 snj Exp $
+# $NetBSD: Makefile,v 1.4 2005/04/11 21:45:00 tv Exp $
#
DISTNAME= GeneSplicer
@@ -16,7 +16,6 @@ EXAMPLES= arabidopsis drosophila malaria pyoelii human rice \
training_data_sets/Human
MAKEFILE= makefile
WRKSRC= ${WRKDIR}/GeneSplicer/sources
-USE_BUILDLINK3= yes
do-install:
${INSTALL_PROGRAM} ${WRKSRC}/genesplicer ${PREFIX}/bin
diff --git a/biology/glimmer/Makefile b/biology/glimmer/Makefile
index 68f8d46045c..773b35c96f6 100644
--- a/biology/glimmer/Makefile
+++ b/biology/glimmer/Makefile
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.5 2004/08/19 16:47:01 ben Exp $
+# $NetBSD: Makefile,v 1.6 2005/04/11 21:45:00 tv Exp $
#
DISTNAME= glimmer213
@@ -10,7 +10,6 @@ MAINTAINER= hdp@cs.nmsu.edu
HOMEPAGE= ftp://ftp.tigr.org/pub/software/Glimmer/
COMMENT= System for finding genes in microbial DNA
-USE_BUILDLINK3= yes
WRKSRC= ${WRKDIR}/glimmer2.13
do-install:
diff --git a/biology/gp/Makefile b/biology/gp/Makefile
index 3318d6a418f..f92c77aacf1 100644
--- a/biology/gp/Makefile
+++ b/biology/gp/Makefile
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.3 2005/03/27 13:01:39 jmmv Exp $
+# $NetBSD: Makefile,v 1.4 2005/04/11 21:45:00 tv Exp $
#
DISTNAME= gp-0.26
@@ -10,6 +10,5 @@ MAINTAINER= hdp@cs.nmsu.edu
HOMEPAGE= http://www.bioinformatics.org/genpak/
COMMENT= Manipulate DNA/RNA sequence in a Unix fashion
-USE_BUILDLINK3= YES
.include "../../mk/bsd.pkg.mk"
diff --git a/biology/hmmer/Makefile b/biology/hmmer/Makefile
index 04536081268..04ae3199ad9 100644
--- a/biology/hmmer/Makefile
+++ b/biology/hmmer/Makefile
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.6 2004/12/01 04:01:09 minskim Exp $
+# $NetBSD: Makefile,v 1.7 2005/04/11 21:45:01 tv Exp $
#
DISTNAME= hmmer-2.3.2
@@ -11,7 +11,6 @@ COMMENT= Implementation of profile HMM software for protein sequence analysis
PKG_INSTALLATION_TYPES= overwrite pkgviews
-USE_BUILDLINK3= yes
GNU_CONFIGURE= yes
MAKE_FLAGS+= MKDIR="${MKDIR}"
diff --git a/biology/mummer/Makefile b/biology/mummer/Makefile
index 80058b3db27..eb2d57eb938 100644
--- a/biology/mummer/Makefile
+++ b/biology/mummer/Makefile
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.4 2004/12/05 15:24:54 cube Exp $
+# $NetBSD: Makefile,v 1.5 2005/04/11 21:45:01 tv Exp $
#
DISTNAME= MUMmer3.15
@@ -11,7 +11,6 @@ HOMEPAGE= http://www.tigr.org/software/mummer/
COMMENT= System for aligning whole genome sequences
WRKSRC= ${WRKDIR}/${DISTNAME}
-USE_BUILDLINK3= YES
USE_GNU_TOOLS+= make
MAKE_ENV+= SH="${SH}"
diff --git a/biology/nut/Makefile b/biology/nut/Makefile
index 01deceba9c7..a0a83f3678a 100644
--- a/biology/nut/Makefile
+++ b/biology/nut/Makefile
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.16 2004/12/30 13:39:12 wiz Exp $
+# $NetBSD: Makefile,v 1.17 2005/04/11 21:45:01 tv Exp $
DISTNAME= nut-10.14
CATEGORIES= biology
@@ -10,7 +10,6 @@ HOMEPAGE= http://www.lafn.org/~av832/
COMMENT= Record what you eat and analyze your meals
BUILD_TARGET= nut
-USE_BUILDLINK3= yes
USE_GNU_TOOLS+= make
do-install:
diff --git a/biology/profit/Makefile b/biology/profit/Makefile
index d4a4baa7ded..c6536b01a52 100644
--- a/biology/profit/Makefile
+++ b/biology/profit/Makefile
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.6 2004/12/03 15:14:52 wiz Exp $
+# $NetBSD: Makefile,v 1.7 2005/04/11 21:45:01 tv Exp $
#
DISTNAME= profit
@@ -12,7 +12,6 @@ COMMENT= Performs least squares fits of two protein structures
DIST_SUBDIR= ${DISTNAME}
BUILD_TARGET= ${DISTNAME}
-USE_BUILDLINK3= YES
WRKSRC= ${WRKDIR}/ProFitV2.2/src
do-install:
diff --git a/biology/rasmol/Makefile b/biology/rasmol/Makefile
index 7c3b499b98e..c9b946f6881 100644
--- a/biology/rasmol/Makefile
+++ b/biology/rasmol/Makefile
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.18 2004/04/11 04:09:11 snj Exp $
+# $NetBSD: Makefile,v 1.19 2005/04/11 21:45:01 tv Exp $
DISTNAME= RasMol_2.7.1
PKGNAME= rasmol-2.7.1
@@ -11,7 +11,6 @@ HOMEPAGE= http://www.bernstein-plus-sons.com/software/rasmol/
COMMENT= Molecular Graphics Visualisation Tool
WRKSRC= ${WRKDIR}/${DISTNAME}/src
-USE_BUILDLINK3= YES
USE_IMAKE= YES
MAKE_ENV+= DEPTHDEF="${DEPTHDEF}"
diff --git a/biology/sewer/Makefile b/biology/sewer/Makefile
index 9a497b6bc38..db0dd9c66b6 100644
--- a/biology/sewer/Makefile
+++ b/biology/sewer/Makefile
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.3 2004/02/18 21:13:48 minskim Exp $
+# $NetBSD: Makefile,v 1.4 2005/04/11 21:45:01 tv Exp $
DISTNAME= sewer
PKGNAME= sewer-2.6
@@ -12,7 +12,6 @@ COMMENT= SEquence Analysis using WEb Resources
PKG_INSTALLATION_TYPES= overwrite pkgviews
-NO_BUILDLINK= YES
NO_CONFIGURE= YES
NO_BUILD= YES
diff --git a/biology/stride/Makefile b/biology/stride/Makefile
index 1f6cb542dba..703c6df68a7 100644
--- a/biology/stride/Makefile
+++ b/biology/stride/Makefile
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.4 2004/08/15 13:37:24 ben Exp $
+# $NetBSD: Makefile,v 1.5 2005/04/11 21:45:01 tv Exp $
#
DISTNAME= stride
@@ -11,7 +11,6 @@ HOMEPAGE= http://wolf.bi.umist.ac.uk/unix/stride.html
COMMENT= Protein secondary structure assignment from atomic coordinates
WRKSRC= ${WRKDIR}
-USE_BUILDLINK3= YES
do-install:
${INSTALL_PROGRAM} ${WRKDIR}/stride ${PREFIX}/bin
diff --git a/biology/xylem/Makefile b/biology/xylem/Makefile
index 0325b744857..6aba269cab7 100644
--- a/biology/xylem/Makefile
+++ b/biology/xylem/Makefile
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.3 2004/04/11 04:12:04 snj Exp $
+# $NetBSD: Makefile,v 1.4 2005/04/11 21:45:01 tv Exp $
#
DISTNAME= xylem.1.8.7
@@ -12,7 +12,6 @@ HOMEPAGE= http://home.cc.umanitoba.ca/~psgendb/XYLEM.html
COMMENT= Tools for manipulation of genetic databases
WRKSRC= ${WRKDIR}/xylem/src.c
-USE_BUILDLINK3= YES
do-configure:
${CP} ${WRKSRC}/p2c.h.standard ${WRKSRC}/p2c.h