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| author | bacon <bacon@pkgsrc.org> | 2021-12-14 19:02:21 +0000 |
|---|---|---|
| committer | bacon <bacon@pkgsrc.org> | 2021-12-14 19:02:21 +0000 |
| commit | a26fb2b7960990fa4e3fed146b2dfe9f68a3385a (patch) | |
| tree | 5dd8fe5c1b4460251b3987b8bcf81534a5d7b4d1 /biology | |
| parent | b2ccb5dd01c0c0a7131c2bd65089e465105645ad (diff) | |
| download | pkgsrc-a26fb2b7960990fa4e3fed146b2dfe9f68a3385a.tar.gz | |
biology/ad2vcf: Update to 0.1.4
Updates for evolving libxtend and biolibc APIs
Add --version flag
Filter out unused SAM fields on input
Numerous other minor fixes and enhancements
Changes: https://github.com/auerlab/ad2vcf/releases/tag/0.1.4
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/ad2vcf/Makefile | 8 | ||||
| -rw-r--r-- | biology/ad2vcf/PLIST | 2 | ||||
| -rw-r--r-- | biology/ad2vcf/distinfo | 8 |
3 files changed, 9 insertions, 9 deletions
diff --git a/biology/ad2vcf/Makefile b/biology/ad2vcf/Makefile index 67dbc1badee..fa2b6f6f32a 100644 --- a/biology/ad2vcf/Makefile +++ b/biology/ad2vcf/Makefile @@ -1,21 +1,21 @@ -# $NetBSD: Makefile,v 1.3 2021/08/28 18:39:10 bacon Exp $ +# $NetBSD: Makefile,v 1.4 2021/12/14 19:02:21 bacon Exp $ -DISTNAME= ad2vcf-0.1.3.31 +DISTNAME= ad2vcf-0.1.4 CATEGORIES= biology MASTER_SITES= ${MASTER_SITE_GITHUB:=auerlab/} -GITHUB_TAG= 2073297895dbeb512a83a77f8a05636aa07e6b13 MAINTAINER= bacon@NetBSD.org HOMEPAGE= https://github.com/auerlab/ad2vcf COMMENT= Add allelic depth info from a SAM stream to a VCF file LICENSE= 2-clause-bsd +MAKE_ENV+= VERSION=${PKGVERSION} + pre-build: cd ${WRKSRC} && ${MAKE} PREFIX=${PREFIX} depend do-test: cd ${WRKSRC}/Test && ./run-test.sh -.include "../../devel/libxtend/buildlink3.mk" .include "../../biology/biolibc/buildlink3.mk" .include "../../mk/bsd.pkg.mk" diff --git a/biology/ad2vcf/PLIST b/biology/ad2vcf/PLIST index 718ae66a8d1..1be64d81ff2 100644 --- a/biology/ad2vcf/PLIST +++ b/biology/ad2vcf/PLIST @@ -1,3 +1,3 @@ -@comment $NetBSD: PLIST,v 1.3 2021/08/28 18:39:10 bacon Exp $ +@comment $NetBSD: PLIST,v 1.4 2021/12/14 19:02:21 bacon Exp $ bin/ad2vcf man/man1/ad2vcf.1 diff --git a/biology/ad2vcf/distinfo b/biology/ad2vcf/distinfo index e14dcb5ab09..2dfa66c1eaa 100644 --- a/biology/ad2vcf/distinfo +++ b/biology/ad2vcf/distinfo @@ -1,5 +1,5 @@ -$NetBSD: distinfo,v 1.5 2021/10/26 10:03:36 nia Exp $ +$NetBSD: distinfo,v 1.6 2021/12/14 19:02:21 bacon Exp $ -BLAKE2s (ad2vcf-0.1.3.31-2073297895dbeb512a83a77f8a05636aa07e6b13.tar.gz) = 444f3e9e642896d444bf42eab9db0b842e4be39d227a711d77904786084227b6 -SHA512 (ad2vcf-0.1.3.31-2073297895dbeb512a83a77f8a05636aa07e6b13.tar.gz) = 55ac1c771eb1c7e158a0195f7b2ad787206dc7639846a6e645a0137cc32c74c36441c266ffe3ac9d03398dad3f3c58c2f246066c002df2b740d97d8526d2431f -Size (ad2vcf-0.1.3.31-2073297895dbeb512a83a77f8a05636aa07e6b13.tar.gz) = 15205 bytes +BLAKE2s (ad2vcf-0.1.4.tar.gz) = d1177710c60983ce0ad2ec954f98ddd87c1a23619e1c60f9856b373db07add85 +SHA512 (ad2vcf-0.1.4.tar.gz) = b167fd249861d10d48806150343768aa9f90d574b5439a2d851d26c6b7bd8e4533832499f91c70e8d90e17cfbdea11ae0b64cf7521a9c249ed5c0b69e3e19701 +Size (ad2vcf-0.1.4.tar.gz) = 15964 bytes |