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| author | wiz <wiz@pkgsrc.org> | 2017-09-17 07:48:11 +0000 |
|---|---|---|
| committer | wiz <wiz@pkgsrc.org> | 2017-09-17 07:48:11 +0000 |
| commit | bbe657058a948113716ba5a412b86fdb490b315d (patch) | |
| tree | abb499cd4e44d8b7b6b3f0b661c43293318465a7 /biology | |
| parent | 557212bc58b5b5c7b9634202a979793bf461985c (diff) | |
| download | pkgsrc-bbe657058a948113716ba5a412b86fdb490b315d.tar.gz | |
bioperl: update to 1.007002.
Add p5-Text-Diff as test dependency.
1.7.2 - "Entebbe"
[Bugs]
* #247 - Omit unnecessary parent_id attribute added by GFF3Loader [nathanweeks]
* #245 - Code coverage fixes [zmughal,cjfields]
* #237 - Fix warning in Bio::DB::IndexedBase [willmclaren,bosborne]
* #238 - Use a Travis cron job for network tests [zmughal,cjfields]
* #218 - Bio::DB::Flat::BinarySearch should use _fh() instead of fh() as fh() does not take arguments in [thibauthourlier,bosborne]
* #227 - Bio::SeqIO Ignores first line of sequence [VAR121,bosborne]
* #223 - Use Travis Perl helper script and enable coverage [zmughal,cjfields]
* #222 - Fix test RemoteDB/Taxonomy.t: requires networking [zmughal,cjfields]
* #216 - Apply carsonhh's patch (Inline::C fixes) [carsonh,bosborne]
* #213 - Support FTS5 in Bio::DB::SeqFeature::Store::DBI::SQLite [nathanweeks,bosborne]
* #210 - Sorting qualifiers while write embl files [hdevillers,cjfields]
* #209 - Fixed bug in _toDsspKey() [jvolkening,hlapp]
[Code changes]
* PAML-related code from bioperl and bioperl-run are now in a separate distribution on CPAN [carandraug]
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/bioperl/Makefile | 6 | ||||
| -rw-r--r-- | biology/bioperl/distinfo | 10 |
2 files changed, 9 insertions, 7 deletions
diff --git a/biology/bioperl/Makefile b/biology/bioperl/Makefile index f794d90b09c..153724b8e92 100644 --- a/biology/bioperl/Makefile +++ b/biology/bioperl/Makefile @@ -1,6 +1,6 @@ -# $NetBSD: Makefile,v 1.34 2016/11/10 14:00:17 fhajny Exp $ +# $NetBSD: Makefile,v 1.35 2017/09/17 07:48:11 wiz Exp $ -DISTNAME= BioPerl-1.007001 +DISTNAME= BioPerl-1.007002 PKGNAME= ${DISTNAME:tl} CATEGORIES= biology perl5 MASTER_SITES= ${MASTER_SITE_PERL_CPAN:=Bio/} @@ -49,6 +49,8 @@ DEPENDS+= p5-libxml-[0-9]*:../../textproc/p5-libxml # Suggested DEPENDS+= p5-XML-DOM>=0:../../textproc/p5-XML-DOM +# TEST_DEPENDS +BUILD_DEPENDS+= p5-Text-Diff-[0-9]*:../../textproc/p5-Text-Diff USE_TOOLS+= pax diff --git a/biology/bioperl/distinfo b/biology/bioperl/distinfo index 7a06c9f5d75..d2060b2c331 100644 --- a/biology/bioperl/distinfo +++ b/biology/bioperl/distinfo @@ -1,6 +1,6 @@ -$NetBSD: distinfo,v 1.8 2016/11/06 08:05:24 wen Exp $ +$NetBSD: distinfo,v 1.9 2017/09/17 07:48:11 wiz Exp $ -SHA1 (BioPerl-1.007001.tar.gz) = 13a3e7a30d68ee32d735921668839eda668771f4 -RMD160 (BioPerl-1.007001.tar.gz) = c433044f47f5827f480836329487bf5780c9f480 -SHA512 (BioPerl-1.007001.tar.gz) = 6ab6af9d8fa74a299870273f2843872af099764997aa1b03f88248502f9ed1b74f4f577b67befa1ae8c18ee2640c029a08a403e2dec5b1cdea41f2b86c82c11b -Size (BioPerl-1.007001.tar.gz) = 12486953 bytes +SHA1 (BioPerl-1.007002.tar.gz) = 21ab4653fde8cd8520bd7f59f790535f99358eaa +RMD160 (BioPerl-1.007002.tar.gz) = 6c38bb83464a36546e22629675f881d42dbda4bd +SHA512 (BioPerl-1.007002.tar.gz) = d89502dd0561a9a969d816e6d66df7f11e57709934095a87027d2637d16a463f0669f7d7392d95a1c8a9db94bfa8d6ec714668a4b9f81fa8b9b512796138d287 +Size (BioPerl-1.007002.tar.gz) = 12362741 bytes |