diff options
| author | ryoon <ryoon@pkgsrc.org> | 2020-06-29 13:04:48 +0000 |
|---|---|---|
| committer | ryoon <ryoon@pkgsrc.org> | 2020-06-29 13:04:48 +0000 |
| commit | ca64eb09f47ed9d35e943736dab708adba51931e (patch) | |
| tree | 25f4f31713d152ba0efe7326da79bdb82bb02cc3 /biology | |
| parent | 3acbd2011bc46fa31fc8633e428920abbbdb6a6c (diff) | |
| download | pkgsrc-ca64eb09f47ed9d35e943736dab708adba51931e.tar.gz | |
gnome-chemistry-utils: Update to 0.14.16
Changelog:
Version 0.14.16:
GChemPaint:
* Do not show buttons for non yet implemented tools.
Version 0.14.15:
GCCV library:
* Don't use the abs() function on unsigned numbers.
Other:
* Updated appdata files.
Version 0.14.14:
Mozilla plugin:
* Fix build.
Version 0.14.13:
GChemPaint:
* Optional use of Lasem to display maths.
* Fix rendering with gtk+ >= 3.20.
* Fix crash with atom charges larger than 1.
* Fix crash when deleting a bond outside a molecule. [#48256]
Gnumeric plugin:
* Add monoisotopicmass function in gnumeric and more.
Databases:
* Update names for elements 113, 115, 117 and 118.
Version 0.14.12:
GChemPaint:
* Enhanced Chemdraw formats support. [sr #108952]
* Optional use of Lasem to display maths.
* Fix rendering with gtk+ >= 3.20.
GChemCalc:
* Don't crash on "Ac" string. [#47366]
Version 0.14.11:
GChemPaint:
* Fix an infinite loop condition in retrosyntheses alignment.
* Don't crash when importing an invalid string. [Redhat bug #1285154]
* Fix drawing when zoomed.
* Fix various runtime errors.
* Fix crash when creating a reaction with no product.
* Enhanced Chemdraw formats support.
* Fix embedding of a whole molecule inside brackets. [#47224]
GChemTable:
* Don't crash when showing an already existing chart.
[Redhat bug #1302135]
GCrystal:
* Fix build with gcc-6. [Redhat bug #1307546]
GCrystal and GChem3D:
* Don't crash when rendering to memory (images and print). [#47169]
Other:
* Added keywords to desktop files.
* Updated appdata files.
Version 0.14.10:
GChemPaint:
* Fix an object bounds issue.
Mozilla plugin:
* Supports the npapi-sdk package as requirement.
Other:
* Fixed typos in appdata files.
Version 0.14.9:
GChemPaint:
* Ensure that the document size is always updated. [#43091]
3d viewer and GCrystal:
* Fix rotation. [#42977] (patch from Toni Andjelkovic)
All applications:
* Add appdata files.
Version 0.14.8
GChemPaint:
* Fix drawing with Gtk+ >= 3.10.
Version 0.14.7
GCrystal:
* Fix crash in dialogs with recent Gtk+.
Mozilla plugin:
* Fix crashers for 2D and 3D molecules.
Version 0.14.6
3d viewer:
* Avoid empty entries in recent list.
CGchemPaint:
* Restore .mol files support.
* Fix CML import (also affected 3d viewer and >GCrystal).
* Fix BMP export.
GCrystal:
* Fix test order in lines code. [#41261]
GSpectrum:
* Fix access to uninitialized data.
* Don' double free a string.
GOffice component:
* Don't crash when editing after saving a GChemPaint object.
Mozilla plugin:
* Fix supported mime-types list. (see Debian bug #716961)
Other:
* Fix build on FreeBSD (Koop Mast). [#41256]
Version 0.14.5
GChemPaint:
* Make adding template work again.
Version 0.14.4
GChemPaint:
* Do not use a NULL atom properties. [#40194]
Version 0.14.3
GChemPaint:
* Really close the window on delete event.
* Don't crash when aligning ungrouped objects.
GChemTable:
* Fix crash when using masses in a graph.
* Fix graph behavior after edition.
All:
* Make sure to not create a C++ locale from a NULL string.
Version 0.14.2
GChemPaint:
* Fix crash when loading some molecules (was introduced in 0.14.1).
Version 0.14.1
GChemPaint:
* Do not allow a mesomery destruction when inside a reaction.
* Fix molecule deletion inside a mesomery.
* Fix reactant deletion inside a reaction.
* Don't crash when a mesomery inside a reaction is destroyed.
* Check molecule consistency when loading, avoids a stack overflow.
* Enhanced representaion of chiral molecules imported from CML and other
formats.
* Fix crash when deleting a cyclic bond.
GCrystal:
* Fix row selection operations order in grids.
Version 0.14.0
GChemPaint:
* Fix reaction construction.
* Fix non bonding electron pairs.
Version 0.13.99
GChemPaint:
* Fix squiggle bonds period.
* Allow brackets around a mesomery.
* Allow a mesomery inside a reaction.
* Fixed some meomory access issues.
* Fixed crash when loading a group.
* Fixed mesomery construction.
* Fixed crash when ungrouping.
Version 0.13.98
GChemPaint:
* Don't freeze after an aborted molecules merge.
* Initialize the bond order for the Newman projection tool.
* Don't crash when adding brackets around a fragment.
* Fix undoing a molecule partial flip.
* Fix bracket stoichiometry index position after a transform.
* Fix explicit lone pairs count evaluation.
Version 0.13.92
GChemCalc
* Updated the documentation.
GChemPaint:
* Fix View::BuildSVG() and View::BuildEPS() which were missing the
trailing 0.
* Fix misleading error message while saving.
* Fix loading of arrows inside a group. [#27032]
GCrystal:
* Apply element change to all slected atoms.
* Updated the documentation.
GSpectrum:
* Add "Response factor" as supported unit.
* Fixed widgets spacing.
* Updated the documentation.
GChemTable:
* Updated the documentation.
Version 0.13.91
3d viewer:
* Show all menu items when a molecule is loaded from the command line.
* Updated user documentation.
GChemPaint:
* Don't crash on startup.
All:
* Fix localization issues.
* Fixed modal message boxes behavior.
Version 0.13.90
3d viewer:
* Fix import from pdb files. [#36582]
GCrystal:
* Fix infinite loop condition. [#36583]
* Fix atomic radius change issue.
GChemTable:
* Fix languages translation.
Version 0.13.7
GChemPaint:
* Fixed crash when selecting the alignment item inside a mechanism
step. [#35626]
GCrystal:
* Fixed loading CIF files using uptodate space groups descriptions.
Other:
* License is now GPL version 3 (except for the OpenBabel related code).
* Fix build on big endian machines (Dan Horak). [#36175]
* Updated API documentation.
Version 0.13.6
GChemPaint:
* fixed text position serialization. [#34947]
* add some support for Newman projections.
* accept some multisteps reactions.
Goffice component:
* Add support for 3D molecular structures.
Other:
* Fixed pixmaps installation directory. [#35272]
* fixed build with ->l,--no-undefined. [patch #7677]
Version 0.13.5
3d viewer:
* Import from InChI or SMILES.
* Export to GChemPaint and GChemCalc.
* Generates InChI, InChiKey and SMILES.
* Add access to databases.
GChemPaint:
* Brackets inside a molecule accept a stoichiometry coefficient.
GCrystal:
* Use multiple selection in atoms and lines dialogs.
GSpectrum:
* Allow markup in combo boxes and axes titles.
Goffice component:
* Add support for crystal structures.
Other:
* Fixed one more OpenGL related crasher.
Version 0.13.4
All:
* Ported to Gtk+-3.0.
GCrystal:
* Use the new GcrGrid item in atoms, lines and cleavages dialogs.
* Make these and size dialogs instant apply.
GChemTable:
* Use a more complete tip window for elements.
Version 0.13.3
GChemPaint:
* Fixed build with gcc-4.6. [#32363]
* Allow colored atomic symbols on a per-document basis.
* Brackets tool now working, not perfectly though.
Other:
* Don't use POLLRDHUP when not defined. [#32768]
* Split libgcu so that libgcu itself never calls gtk+ directly.
Version 0.13.2
GChemPaint:
* Do not allow document changes using keyboard while
dragging the mouse. [#31812]
* Don't add new molecules when undoing a mechanism arrow deletion.
[#32433]
* Removed the Wikipedia tool which was obsolete.
* Reorganized molecule contextual menu with new 3D options
and databases access.
Other:
* OpenBabel support has been moved to a separate process and greatly
enhanced, specially for 3D export from gchempaint.
* A lot of bugs have been fixed.
Version 0.13.1
GSpectrum:
* Loads NUTS files.
* Transforms FID to spectrum.
Version 0.13.0
GChemPaint:
* New "lasso" tool to allow partial selections.
* New "brackets" tool (doesn't work yet).
Other:
* libgcr: new library for GCrystal.
* Fixed all bugs discovered in the 0.12 banch.
Diffstat (limited to 'biology')
8 files changed, 354 insertions, 369 deletions
diff --git a/biology/gnome-chemistry-utils/Makefile b/biology/gnome-chemistry-utils/Makefile index 15c1a0b032e..dfc8949b159 100644 --- a/biology/gnome-chemistry-utils/Makefile +++ b/biology/gnome-chemistry-utils/Makefile @@ -1,10 +1,9 @@ -# $NetBSD: Makefile,v 1.46 2020/06/02 08:23:16 adam Exp $ +# $NetBSD: Makefile,v 1.47 2020/06/29 13:04:48 ryoon Exp $ # -DISTNAME= gnome-chemistry-utils-0.12.13 -PKGREVISION= 33 +DISTNAME= gnome-chemistry-utils-0.14.16 CATEGORIES= biology -MASTER_SITES= http://download-mirror.savannah.gnu.org/releases/gchemutils/0.12/ +MASTER_SITES= http://download-mirror.savannah.gnu.org/releases/gchemutils/0.14/ EXTRACT_SUFX= .tar.bz2 MAINTAINER= pkgsrc-users@NetBSD.org @@ -17,25 +16,19 @@ USE_LIBTOOL= yes USE_TOOLS+= gmake intltool pkg-config msgfmt xgettext msgmerge perl USE_LANGUAGES= c c++ -GCONF_SCHEMAS+= gchemutils.schemas -GCONF_SCHEMAS+= gchempaint-arrows.schemas -GCONF_SCHEMAS+= gcrystal.schemas -GCONF_SCHEMAS+= gchempaint.schemas - BUILDLINK_TRANSFORM+= rm:-DGTK_DISABLE_DEPRECATED BUILDLINK_TRANSFORM+= rm:-ldl CONFIGURE_ARGS+= --disable-update-databases -.include "../../devel/GConf/schemas.mk" .include "../../databases/shared-mime-info/buildlink3.mk" .include "../../databases/gnome-mime-data/buildlink3.mk" .include "../../textproc/gnome-doc-utils/buildlink3.mk" -.include "../../mk/omf-scrollkeeper.mk" .include "../../graphics/gtkglext/buildlink3.mk" -.include "../../misc/goffice0.8/buildlink3.mk" +.include "../../misc/goffice0.10/buildlink3.mk" .include "../../sysutils/desktop-file-utils/desktopdb.mk" .include "../../biology/chemical-mime-data/buildlink3.mk" .include "../../biology/bodr/buildlink3.mk" .include "../../biology/openbabel/buildlink3.mk" +.include "../../x11/gtk3/buildlink3.mk" .include "../../mk/bsd.pkg.mk" diff --git a/biology/gnome-chemistry-utils/PLIST b/biology/gnome-chemistry-utils/PLIST index 4aa8fc8ba0f..8a59ef6bd81 100644 --- a/biology/gnome-chemistry-utils/PLIST +++ b/biology/gnome-chemistry-utils/PLIST @@ -1,305 +1,306 @@ -@comment $NetBSD: PLIST,v 1.2 2012/07/03 19:32:10 ryoon Exp $ +@comment $NetBSD: PLIST,v 1.3 2020/06/29 13:04:48 ryoon Exp $ bin/gchem3d -bin/gchem3d-0.12 +bin/gchem3d-0.14 bin/gchemcalc -bin/gchemcalc-0.12 +bin/gchemcalc-0.14 bin/gchempaint -bin/gchempaint-0.12 +bin/gchempaint-0.14 bin/gchemtable -bin/gchemtable-0.12 +bin/gchemtable-0.14 bin/gcrystal -bin/gcrystal-0.12 +bin/gcrystal-0.14 bin/gspectrum -bin/gspectrum-0.12 -lib/gchemutils/0.12/plugins/cdx/cdx.la -lib/gchemutils/0.12/plugins/cdx/plugin.xml -lib/gchemutils/0.12/plugins/cdxml/cdxml.la -lib/gchemutils/0.12/plugins/cdxml/plugin.xml -lib/gchemutils/0.12/plugins/cif/cif.la -lib/gchemutils/0.12/plugins/cif/plugin.xml -lib/gchemutils/0.12/plugins/cml/cml.la -lib/gchemutils/0.12/plugins/cml/plugin.xml -lib/gchemutils/0.12/plugins/paint/arrows.la -lib/gchemutils/0.12/plugins/paint/atoms.la -lib/gchemutils/0.12/plugins/paint/bonds.la -lib/gchemutils/0.12/plugins/paint/cycles.la -lib/gchemutils/0.12/plugins/paint/residues.la -lib/gchemutils/0.12/plugins/paint/selection.la -lib/gchemutils/0.12/plugins/paint/templates.la -lib/gchemutils/0.12/plugins/paint/text.la -lib/gchemutils/0.12/plugins/paint/wikipedia.la -lib/goffice/0.8.17/plugins/gchemutils/gchemutils.la -lib/goffice/0.8.17/plugins/gchemutils/plugin.xml -lib/libgccv-0.12.la -lib/libgcp-0.12.la -lib/libgcu-0.12.la +bin/gspectrum-0.14 +lib/gchemutils/0.14/plugins/cdx/cdx.la +lib/gchemutils/0.14/plugins/cdx/plugin.xml +lib/gchemutils/0.14/plugins/cdxml/cdxml.la +lib/gchemutils/0.14/plugins/cdxml/plugin.xml +lib/gchemutils/0.14/plugins/cif/cif.la +lib/gchemutils/0.14/plugins/cif/plugin.xml +lib/gchemutils/0.14/plugins/cml/cml.la +lib/gchemutils/0.14/plugins/cml/plugin.xml +lib/gchemutils/0.14/plugins/nuts/nuts.la +lib/gchemutils/0.14/plugins/nuts/plugin.xml +lib/gchemutils/0.14/plugins/paint/arrows.la +lib/gchemutils/0.14/plugins/paint/atoms.la +lib/gchemutils/0.14/plugins/paint/bonds.la +lib/gchemutils/0.14/plugins/paint/cycles.la +lib/gchemutils/0.14/plugins/paint/residues.la +lib/gchemutils/0.14/plugins/paint/selection.la +lib/gchemutils/0.14/plugins/paint/templates.la +lib/gchemutils/0.14/plugins/paint/text.la +lib/goffice/0.10/plugins/gchemutils/gchemutils.la +lib/goffice/0.10/plugins/gchemutils/plugin.xml +lib/libgccv-0.14.la +lib/libgcp-0.14.la +lib/libgcrystal-0.14.la +lib/libgcu-0.14.la +lib/libgcugtk-0.14.la +libexec/babelserver man/man1/gchem3d.1 man/man1/gchemcalc.1 man/man1/gchempaint.1 man/man1/gchemtable.1 man/man1/gcrystal.1 man/man1/gspectrum.1 -share/applications/gchem3d-0.12.desktop -share/applications/gchemcalc-0.12.desktop -share/applications/gchempaint-0.12.desktop -share/applications/gchemtable-0.12.desktop -share/applications/gcrystal-0.12.desktop -share/applications/gspectrum-0.12.desktop -share/gchemutils/0.12/elecprops.xml -share/gchemutils/0.12/elements.xml -share/gchemutils/0.12/isotopes.xml -share/gchemutils/0.12/paint/templates/haworth.xml -share/gchemutils/0.12/paint/templates/templates.xml -share/gchemutils/0.12/paint/themes/ACS_Document_1996 -share/gchemutils/0.12/paint/themes/Wikipedia -share/gchemutils/0.12/pixmaps/gchempaint_logo.png -share/gchemutils/0.12/pixmaps/gcrystal_logo.png -share/gchemutils/0.12/radii.xml -share/gchemutils/0.12/residues.xml -share/gchemutils/0.12/space-groups.xml -share/gchemutils/0.12/ui/calc/gchemcalc.ui -share/gchemutils/0.12/ui/crystal/atoms.ui -share/gchemutils/0.12/ui/crystal/bonds.ui -share/gchemutils/0.12/ui/crystal/cell.ui -share/gchemutils/0.12/ui/crystal/cleavages.ui -share/gchemutils/0.12/ui/crystal/docprop.ui -share/gchemutils/0.12/ui/crystal/lines.ui -share/gchemutils/0.12/ui/crystal/prefs.ui -share/gchemutils/0.12/ui/crystal/size.ui -share/gchemutils/0.12/ui/crystal/view-settings.ui -share/gchemutils/0.12/ui/libgcu/gcuperiodic.ui -share/gchemutils/0.12/ui/libgcu/image-resolution.ui -share/gchemutils/0.12/ui/libgcu/image-size.ui -share/gchemutils/0.12/ui/libgcu/print-setup.ui -share/gchemutils/0.12/ui/paint/H-pos.ui -share/gchemutils/0.12/ui/paint/arrow-object.ui -share/gchemutils/0.12/ui/paint/arrow.png -share/gchemutils/0.12/ui/paint/docprop.ui -share/gchemutils/0.12/ui/paint/newfiledlg.ui -share/gchemutils/0.12/ui/paint/plugins/arrows/arrowtool.ui -share/gchemutils/0.12/ui/paint/plugins/arrows/curvedarrowtool.ui -share/gchemutils/0.12/ui/paint/plugins/atoms/orbital-prop.ui -share/gchemutils/0.12/ui/paint/plugins/atoms/orbital.ui -share/gchemutils/0.12/ui/paint/plugins/bonds/bond.ui -share/gchemutils/0.12/ui/paint/plugins/bonds/chain.ui -share/gchemutils/0.12/ui/paint/plugins/cycles/cycle.ui -share/gchemutils/0.12/ui/paint/plugins/cycles/cyclen.ui -share/gchemutils/0.12/ui/paint/plugins/residues/residues.ui -share/gchemutils/0.12/ui/paint/plugins/selection/group.ui -share/gchemutils/0.12/ui/paint/plugins/templates/new-template.ui -share/gchemutils/0.12/ui/paint/plugins/templates/templates.ui -share/gchemutils/0.12/ui/paint/plugins/text/fontsel.ui -share/gchemutils/0.12/ui/paint/preferences.ui -share/gchemutils/0.12/ui/paint/stringdlg.ui -share/gchemutils/0.12/ui/paint/tools.ui -share/gchemutils/0.12/ui/paint/zoom.ui -share/gchemutils/0.12/ui/table/acidity.ui -share/gchemutils/0.12/ui/table/block.ui -share/gchemutils/0.12/ui/table/curve.ui -share/gchemutils/0.12/ui/table/eltpage.ui -share/gchemutils/0.12/ui/table/family.ui -share/gchemutils/0.12/ui/table/state-thermometer.ui -share/gconf/schemas/gchempaint-arrows.schemas -share/gconf/schemas/gchempaint.schemas -share/gconf/schemas/gchemutils.schemas -share/gconf/schemas/gcrystal.schemas +share/appdata/gchem3d.appdata.xml +share/appdata/gchemcalc.appdata.xml +share/appdata/gchempaint.appdata.xml +share/appdata/gchemtable.appdata.xml +share/appdata/gcrystal.appdata.xml +share/appdata/gspectrum.appdata.xml +share/applications/gchem3d-0.14.desktop 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+share/gnome/help/gchempaint-0.14/C/gchempaint-0.14.xml +share/gnome/help/gchempaint-0.14/C/legal.xml +share/gnome/help/gchemtable-0.14/C/figures/add-plot.png +share/gnome/help/gchemtable-0.14/C/figures/atomic-radii.png +share/gnome/help/gchemtable-0.14/C/figures/blocs.png +share/gnome/help/gchemtable-0.14/C/figures/choose-data.png +share/gnome/help/gchemtable-0.14/C/figures/curve.png +share/gnome/help/gchemtable-0.14/C/figures/elec.png +share/gnome/help/gchemtable-0.14/C/figures/electronegativity.png +share/gnome/help/gchemtable-0.14/C/figures/family.png +share/gnome/help/gchemtable-0.14/C/figures/graph-guru.png +share/gnome/help/gchemtable-0.14/C/figures/main.png +share/gnome/help/gchemtable-0.14/C/figures/new-chart-guru.png +share/gnome/help/gchemtable-0.14/C/figures/new-chart.png +share/gnome/help/gchemtable-0.14/C/figures/page-setup.png +share/gnome/help/gchemtable-0.14/C/figures/print-scale.png +share/gnome/help/gchemtable-0.14/C/figures/radii.png +share/gnome/help/gchemtable-0.14/C/figures/start.png +share/gnome/help/gchemtable-0.14/C/figures/state.png +share/gnome/help/gchemtable-0.14/C/figures/thermo.png +share/gnome/help/gchemtable-0.14/C/figures/tip.png +share/gnome/help/gchemtable-0.14/C/gchemtable-0.14.xml +share/gnome/help/gchemtable-0.14/C/legal.xml +share/gnome/help/gcrystal-0.14/C/figures/atoms-dlg.png +share/gnome/help/gcrystal-0.14/C/figures/cleavages-dlg.png +share/gnome/help/gcrystal-0.14/C/figures/default-view.png +share/gnome/help/gcrystal-0.14/C/figures/lattice-dlg.png +share/gnome/help/gcrystal-0.14/C/figures/lines-dlg.png +share/gnome/help/gcrystal-0.14/C/figures/main-window.png +share/gnome/help/gcrystal-0.14/C/figures/page-setup.png +share/gnome/help/gcrystal-0.14/C/figures/print-res.png +share/gnome/help/gcrystal-0.14/C/figures/print-scale.png +share/gnome/help/gcrystal-0.14/C/figures/size-dlg.png +share/gnome/help/gcrystal-0.14/C/figures/view-settings.png +share/gnome/help/gcrystal-0.14/C/gcrystal-0.14.xml +share/gnome/help/gcrystal-0.14/C/legal.xml +share/gnome/help/gspectrum-0.14/C/figures/fid-tools.png +share/gnome/help/gspectrum-0.14/C/figures/gspectrum.png +share/gnome/help/gspectrum-0.14/C/figures/ir-tools.png +share/gnome/help/gspectrum-0.14/C/figures/nmr-tools.png +share/gnome/help/gspectrum-0.14/C/figures/page-setup.png +share/gnome/help/gspectrum-0.14/C/figures/print-scale.png +share/gnome/help/gspectrum-0.14/C/figures/simple-toolbar.png +share/gnome/help/gspectrum-0.14/C/figures/uv-vis-tools.png +share/gnome/help/gspectrum-0.14/C/gspectrum-0.14.xml +share/gnome/help/gspectrum-0.14/C/legal.xml +share/icons/hicolor/scalable/apps/gchem3d.svg +share/icons/hicolor/scalable/apps/gchemcalc.svg +share/icons/hicolor/scalable/apps/gchempaint.svg +share/icons/hicolor/scalable/apps/gchemtable.svg +share/icons/hicolor/scalable/apps/gcrystal.svg +share/icons/hicolor/scalable/apps/gspectrum.svg +share/icons/hicolor/scalable/mimetypes/application-x-gchempaint.svg +share/icons/hicolor/scalable/mimetypes/application-x-gcrystal.svg +share/locale/de/LC_MESSAGES/gchemutils-0.14.mo +share/locale/el/LC_MESSAGES/gchemutils-0.14.mo +share/locale/es/LC_MESSAGES/gchemutils-0.14.mo +share/locale/eu/LC_MESSAGES/gchemutils-0.14.mo +share/locale/fr/LC_MESSAGES/gchemutils-0.14.mo +share/locale/it/LC_MESSAGES/gchemutils-0.14.mo +share/locale/pl/LC_MESSAGES/gchemutils-0.14.mo +share/locale/pt_BR/LC_MESSAGES/gchemutils-0.14.mo +share/locale/ru/LC_MESSAGES/gchemutils-0.14.mo +share/locale/zh_CN/LC_MESSAGES/gchemutils-0.14.mo +share/locale/zh_TW/LC_MESSAGES/gchemutils-0.14.mo share/mime/packages/gchemutils.xml share/mimelnk/application/x-gchempaint.desktop share/mimelnk/application/x-gcrystal.desktop -share/omf/gchem3d-0.12/gchem3d-0.12-C.omf -share/omf/gchemcalc-0.12/gchemcalc-0.12-C.omf -share/omf/gchempaint-0.12/gchempaint-0.12-C.omf -share/omf/gchemtable-0.12/gchemtable-0.12-C.omf -share/omf/gcrystal-0.12/gcrystal-0.12-C.omf -share/omf/gspectrum-0.12/gspectrum-0.12-C.omf +share/omf/gchem3d-0.14/gchem3d-0.14-C.omf +share/omf/gchemcalc-0.14/gchemcalc-0.14-C.omf +share/omf/gchempaint-0.14/gchempaint-0.14-C.omf +share/omf/gchemtable-0.14/gchemtable-0.14-C.omf +share/omf/gcrystal-0.14/gcrystal-0.14-C.omf +share/omf/gspectrum-0.14/gspectrum-0.14-C.omf diff --git a/biology/gnome-chemistry-utils/distinfo b/biology/gnome-chemistry-utils/distinfo index 3b836b57c36..1674517f24b 100644 --- a/biology/gnome-chemistry-utils/distinfo +++ b/biology/gnome-chemistry-utils/distinfo @@ -1,10 +1,7 @@ -$NetBSD: distinfo,v 1.7 2015/11/02 18:42:21 agc Exp $ +$NetBSD: distinfo,v 1.8 2020/06/29 13:04:48 ryoon Exp $ -SHA1 (gnome-chemistry-utils-0.12.13.tar.bz2) = a3d83f281ccd7fdbc98e14e295093287d8648a69 -RMD160 (gnome-chemistry-utils-0.12.13.tar.bz2) = 259509c4e9086fc40e91d1f2f93ad5bad9317b8c -SHA512 (gnome-chemistry-utils-0.12.13.tar.bz2) = 70180d9bc51fcef00b979ac0ed573435e17ab626e816a9b0a91cbddf9fb76866c9726802cc741c52fa9243a327d5cd3cdb17e8404916de7447dbd46628adde6d -Size (gnome-chemistry-utils-0.12.13.tar.bz2) = 5399998 bytes -SHA1 (patch-libs_gccv_text.cc) = 798aa83faf31c0e63c88859ccca9ab40c25e5f6d -SHA1 (patch-libs_gcu_loader-error.h) = 8e223394ac6fb6a17cc23439fc2e3bb2e3bc5440 -SHA1 (patch-libs_gcu_spectrumdoc.cc) = 6d4d87c128096006fd384fc058c7942b49df8646 -SHA1 (patch-programs_crystal_document.cc) = 192b376922d39796780863720459ee3ef025bfed +SHA1 (gnome-chemistry-utils-0.14.16.tar.bz2) = 3ae7d3dfb1a5c9cd119c84a789e6571f44b62da7 +RMD160 (gnome-chemistry-utils-0.14.16.tar.bz2) = c4cedcc6aa1cdeae071b3a9a25d3c235f12eb6e7 +SHA512 (gnome-chemistry-utils-0.14.16.tar.bz2) = 7ae652edcee9707c731d77f42899dbebb16c058034d234ea95d62351f8d7c1b87a80ebbf37960721585f8d2af2b5017cb072d655a3c2d01a3a2b52fa1a17b34c +Size (gnome-chemistry-utils-0.14.16.tar.bz2) = 6701094 bytes +SHA1 (patch-configure) = 71e51e882eae3ea5920efdfd7f065f497ab2268d diff --git a/biology/gnome-chemistry-utils/patches/patch-configure b/biology/gnome-chemistry-utils/patches/patch-configure new file mode 100644 index 00000000000..15dfb1df7f7 --- /dev/null +++ b/biology/gnome-chemistry-utils/patches/patch-configure @@ -0,0 +1,56 @@ +$NetBSD: patch-configure,v 1.1 2020/06/29 13:04:48 ryoon Exp $ + +* Use openbabel 3. + +--- configure.orig 2016-11-23 13:06:33.000000000 +0000 ++++ configure +@@ -19695,12 +19695,12 @@ if test -n "$openbabel_CFLAGS"; then + pkg_cv_openbabel_CFLAGS="$openbabel_CFLAGS" + elif test -n "$PKG_CONFIG"; then + if test -n "$PKG_CONFIG" && \ +- { { $as_echo "$as_me:${as_lineno-$LINENO}: \$PKG_CONFIG --exists --print-errors \"openbabel-2.0 >= 2.3.0\""; } >&5 +- ($PKG_CONFIG --exists --print-errors "openbabel-2.0 >= 2.3.0") 2>&5 ++ { { $as_echo "$as_me:${as_lineno-$LINENO}: \$PKG_CONFIG --exists --print-errors \"openbabel-3 >= 3.0.0\""; } >&5 ++ ($PKG_CONFIG --exists --print-errors "openbabel-3 >= 3.0.0") 2>&5 + ac_status=$? + $as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5 + test $ac_status = 0; }; then +- pkg_cv_openbabel_CFLAGS=`$PKG_CONFIG --cflags "openbabel-2.0 >= 2.3.0" 2>/dev/null` ++ pkg_cv_openbabel_CFLAGS=`$PKG_CONFIG --cflags "openbabel-3 >= 3.0.0" 2>/dev/null` + test "x$?" != "x0" && pkg_failed=yes + else + pkg_failed=yes +@@ -19712,12 +19712,12 @@ if test -n "$openbabel_LIBS"; then + pkg_cv_openbabel_LIBS="$openbabel_LIBS" + elif test -n "$PKG_CONFIG"; then + if test -n "$PKG_CONFIG" && \ +- { { $as_echo "$as_me:${as_lineno-$LINENO}: \$PKG_CONFIG --exists --print-errors \"openbabel-2.0 >= 2.3.0\""; } >&5 +- ($PKG_CONFIG --exists --print-errors "openbabel-2.0 >= 2.3.0") 2>&5 ++ { { $as_echo "$as_me:${as_lineno-$LINENO}: \$PKG_CONFIG --exists --print-errors \"openbabel-3 >= 3.0.0\""; } >&5 ++ ($PKG_CONFIG --exists --print-errors "openbabel-3 >= 3.0.0") 2>&5 + ac_status=$? + $as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5 + test $ac_status = 0; }; then +- pkg_cv_openbabel_LIBS=`$PKG_CONFIG --libs "openbabel-2.0 >= 2.3.0" 2>/dev/null` ++ pkg_cv_openbabel_LIBS=`$PKG_CONFIG --libs "openbabel-3 >= 3.0.0" 2>/dev/null` + test "x$?" != "x0" && pkg_failed=yes + else + pkg_failed=yes +@@ -19738,14 +19738,14 @@ else + _pkg_short_errors_supported=no + fi + if test $_pkg_short_errors_supported = yes; then +- openbabel_PKG_ERRORS=`$PKG_CONFIG --short-errors --print-errors --cflags --libs "openbabel-2.0 >= 2.3.0" 2>&1` ++ openbabel_PKG_ERRORS=`$PKG_CONFIG --short-errors --print-errors --cflags --libs "openbabel-3 >= 3.0.0" 2>&1` + else +- openbabel_PKG_ERRORS=`$PKG_CONFIG --print-errors --cflags --libs "openbabel-2.0 >= 2.3.0" 2>&1` ++ openbabel_PKG_ERRORS=`$PKG_CONFIG --print-errors --cflags --libs "openbabel-3 >= 3.0.0" 2>&1` + fi + # Put the nasty error message in config.log where it belongs + echo "$openbabel_PKG_ERRORS" >&5 + +- as_fn_error $? "Package requirements (openbabel-2.0 >= 2.3.0) were not met: ++ as_fn_error $? "Package requirements (openbabel-3 >= 3.0.0) were not met: + + $openbabel_PKG_ERRORS + diff --git a/biology/gnome-chemistry-utils/patches/patch-libs_gccv_text.cc b/biology/gnome-chemistry-utils/patches/patch-libs_gccv_text.cc deleted file mode 100644 index 961a69071c1..00000000000 --- a/biology/gnome-chemistry-utils/patches/patch-libs_gccv_text.cc +++ /dev/null @@ -1,24 +0,0 @@ -$NetBSD: patch-libs_gccv_text.cc,v 1.1 2014/09/23 14:33:40 jperkin Exp $ - -Avoid "call of overloaded 'abs(unsigned int)' is ambiguous". - ---- libs/gccv/text.cc.orig 2012-08-11 12:41:27.000000000 +0000 -+++ libs/gccv/text.cc -@@ -1208,7 +1208,7 @@ bool Text::OnKeyPressed (GdkEventKey *ev - case GDK_Delete: - case GDK_KP_Delete: { - if (m_CurPos != m_StartSel) { -- ReplaceText (empty_st, MIN (m_CurPos, m_StartSel), abs (m_CurPos - m_StartSel)); -+ ReplaceText (empty_st, MIN (m_CurPos, m_StartSel), abs ((float)m_CurPos - m_StartSel)); - if (client) - client->TextChanged (m_CurPos); - break; -@@ -1228,7 +1228,7 @@ bool Text::OnKeyPressed (GdkEventKey *ev - break; - case GDK_BackSpace: { - if (m_CurPos != m_StartSel) { -- ReplaceText (empty_st, MIN (m_CurPos, m_StartSel), abs (m_CurPos - m_StartSel)); -+ ReplaceText (empty_st, MIN (m_CurPos, m_StartSel), abs ((float)m_CurPos - m_StartSel)); - if (client) - client->TextChanged (m_CurPos); - break; diff --git a/biology/gnome-chemistry-utils/patches/patch-libs_gcu_loader-error.h b/biology/gnome-chemistry-utils/patches/patch-libs_gcu_loader-error.h deleted file mode 100644 index f83c7866ec3..00000000000 --- a/biology/gnome-chemistry-utils/patches/patch-libs_gcu_loader-error.h +++ /dev/null @@ -1,12 +0,0 @@ -$NetBSD: patch-libs_gcu_loader-error.h,v 1.1 2013/05/09 13:45:45 joerg Exp $ - ---- libs/gcu/loader-error.h.orig 2013-05-07 20:05:57.000000000 +0000 -+++ libs/gcu/loader-error.h -@@ -28,6 +28,7 @@ - /*!\file*/ - - #include <stdexcept> -+#include <string> - - namespace gcu { - diff --git a/biology/gnome-chemistry-utils/patches/patch-libs_gcu_spectrumdoc.cc b/biology/gnome-chemistry-utils/patches/patch-libs_gcu_spectrumdoc.cc deleted file mode 100644 index 8a9e6c45247..00000000000 --- a/biology/gnome-chemistry-utils/patches/patch-libs_gcu_spectrumdoc.cc +++ /dev/null @@ -1,13 +0,0 @@ -$NetBSD: patch-libs_gcu_spectrumdoc.cc,v 1.1 2013/05/09 13:45:45 joerg Exp $ - ---- libs/gcu/spectrumdoc.cc.orig 2013-05-07 20:06:58.000000000 +0000 -+++ libs/gcu/spectrumdoc.cc -@@ -1618,7 +1618,7 @@ void SpectrumDocument::ReadDataTable (is - break; // this should not occur, but a corrupted or bad file is always possible - s.getline (line, 300); - if (strstr (line, "##")) { -- s.seekg (-strlen (line) -1, _S_cur); -+ s.seekg (-strlen (line) -1, ios::cur); - if (read > npoints) { - g_warning (_("Found too many data!")); - // FIXME: throw an exception diff --git a/biology/gnome-chemistry-utils/patches/patch-programs_crystal_document.cc b/biology/gnome-chemistry-utils/patches/patch-programs_crystal_document.cc deleted file mode 100644 index c5e51080898..00000000000 --- a/biology/gnome-chemistry-utils/patches/patch-programs_crystal_document.cc +++ /dev/null @@ -1,13 +0,0 @@ -$NetBSD: patch-programs_crystal_document.cc,v 1.1 2013/05/09 13:45:45 joerg Exp $ - ---- programs/crystal/document.cc.orig 2013-05-07 20:13:58.000000000 +0000 -+++ programs/crystal/document.cc -@@ -607,7 +607,7 @@ void gcDocument::OnExportVRML (const str - if (error) { - cerr << "gio error: " << error->message << endl; - g_error_free (error); -- g_object_unref (file); -+ g_object_unref (stream); - throw (int) 1; - } - std::map<std::string, sAtom>AtomsMap; |