diff options
| author | asau <asau@pkgsrc.org> | 2012-11-01 04:06:21 +0000 |
|---|---|---|
| committer | asau <asau@pkgsrc.org> | 2012-11-01 04:06:21 +0000 |
| commit | cf848f130c5a7b8bef1790089824c0c394f61767 (patch) | |
| tree | a415bb8d387fc50900dd62e6210bfb01ceec98b7 /biology | |
| parent | b459a6d6cdaf7591853a348440e1b59eccb1d8eb (diff) | |
| download | pkgsrc-cf848f130c5a7b8bef1790089824c0c394f61767.tar.gz | |
Import PLINK/SEQ version 0.08 as biology/plinkseq
Packaged by Jason Bacon for pkgsrc-wip.
PLINK/SEQ is an open-source C/C++ library for working with human genetic
variation data. The specific focus is to provide a platform for analytic tool
development for variation data from large-scale resequencing and genotyping
projects, particularly whole-exome and whole-genome studies. It is independent
of (but designed to be complementary to) the existing PLINK package.
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/plinkseq/DESCR | 5 | ||||
| -rw-r--r-- | biology/plinkseq/Makefile | 25 | ||||
| -rw-r--r-- | biology/plinkseq/PLIST | 11 | ||||
| -rw-r--r-- | biology/plinkseq/distinfo | 5 |
4 files changed, 46 insertions, 0 deletions
diff --git a/biology/plinkseq/DESCR b/biology/plinkseq/DESCR new file mode 100644 index 00000000000..d55ec958eaf --- /dev/null +++ b/biology/plinkseq/DESCR @@ -0,0 +1,5 @@ +PLINK/SEQ is an open-source C/C++ library for working with human genetic +variation data. The specific focus is to provide a platform for analytic tool +development for variation data from large-scale resequencing and genotyping +projects, particularly whole-exome and whole-genome studies. It is independent +of (but designed to be complementary to) the existing PLINK package. diff --git a/biology/plinkseq/Makefile b/biology/plinkseq/Makefile new file mode 100644 index 00000000000..2578471abd2 --- /dev/null +++ b/biology/plinkseq/Makefile @@ -0,0 +1,25 @@ +# $NetBSD: Makefile,v 1.1 2012/11/01 04:06:21 asau Exp $ + +DISTNAME= plinkseq-0.08 +CATEGORIES= biology +MASTER_SITES= http://atgu.mgh.harvard.edu/plinkseq/dist/version-0.08/ + +MAINTAINER= jwbacon@tds.net +HOMEPAGE= http://atgu.mgh.harvard.edu/plinkseq/ +COMMENT= C/C++ library for working with human genetic variation data +LICENSE= gnu-gpl-v2 # Assuming same as plink. No info on web. + +GNU_CONFIGURE= yes +USE_LIBTOOL= yes +USE_LANGUAGES= c c++ +USE_TOOLS= bash:run +REPLACE_BASH= browser/pbrowse.in index/index.in + +.include "../../mk/bsd.prefs.mk" + +.if $(OPSYS) != "Linux" +BUILDLINK_TRANSFORM= rm:-ldl +.endif + +.include "../../devel/protobuf/buildlink3.mk" +.include "../../mk/bsd.pkg.mk" diff --git a/biology/plinkseq/PLIST b/biology/plinkseq/PLIST new file mode 100644 index 00000000000..e2efdad07eb --- /dev/null +++ b/biology/plinkseq/PLIST @@ -0,0 +1,11 @@ +@comment $NetBSD: PLIST,v 1.1 2012/11/01 04:06:21 asau Exp $ +bin/behead +bin/gcol +bin/index +bin/index.cgi +bin/mongoose +bin/pbrowse +bin/pbrowse.cgi +bin/pseq +bin/tab2vcf +lib/libplinkseq.la diff --git a/biology/plinkseq/distinfo b/biology/plinkseq/distinfo new file mode 100644 index 00000000000..f3abc62c19b --- /dev/null +++ b/biology/plinkseq/distinfo @@ -0,0 +1,5 @@ +$NetBSD: distinfo,v 1.1 2012/11/01 04:06:21 asau Exp $ + +SHA1 (plinkseq-0.08.tar.gz) = 8bff6b32750eee85559dda2c7c3cf9aea423a3d7 +RMD160 (plinkseq-0.08.tar.gz) = bce0966ea5f25d8c1091157561aaf533a98595ec +Size (plinkseq-0.08.tar.gz) = 2991871 bytes |