Changes 1.6.5:

* New features:
	* Added yodconfig
	* Added HSYS_ERROR, H5F_OBJ_LOCAL flag
	* Added mpich2 as a testing "platform"
* Bug fixes

6 files changed, 83 insertions, 201 deletions

diff --git a/devel/hdf5/Makefile b/devel/hdf5/Makefile
index fc31b39f2fa..13c95f95132 100644
--- a/devel/hdf5/Makefile
+++ b/devel/hdf5/Makefile
@@ -1,7 +1,6 @@
-# $NetBSD: Makefile,v 1.30 2005/08/16 22:02:10 dmcmahill Exp $
+# $NetBSD: Makefile,v 1.31 2005/11/29 10:03:39 adam Exp $
 
-DISTNAME=	hdf5-1.6.4
-PKGREVISION=	1
+DISTNAME=	hdf5-1.6.5
 CATEGORIES=	devel
 MASTER_SITES=	ftp://ftp.ncsa.uiuc.edu/HDF/HDF5/hdf5-1.6.4/src/ \
 		ftp://sunsite.doc.ic.ac.uk/packages/HDF/HDF5/hdf5-1.6.4/src/ \
@@ -11,8 +10,8 @@ MAINTAINER=	tech-pkg@NetBSD.org
 HOMEPAGE=	http://hdf.ncsa.uiuc.edu/HDF5/
 COMMENT=	Hierarchical Data Format (new generation)
 
-USE_TOOLS+=		tr
 USE_LIBTOOL=		yes
+USE_TOOLS+=		tr
 GNU_CONFIGURE=		yes
 TEST_TARGET=		check
 
diff --git a/devel/hdf5/PLIST b/devel/hdf5/PLIST
index ab46ee77c39..1f6359196a9 100644
--- a/devel/hdf5/PLIST
+++ b/devel/hdf5/PLIST
@@ -1,4 +1,4 @@
-@comment $NetBSD: PLIST,v 1.11 2005/06/15 01:51:32 dmcmahill Exp $
+@comment $NetBSD: PLIST,v 1.12 2005/11/29 10:03:39 adam Exp $
 bin/gif2h5
 bin/h52gif
 bin/h5cc
@@ -335,6 +335,9 @@ share/doc/html/hdf5/cpplus_RM/H5AbstractDs_8h-source.html
 share/doc/html/hdf5/cpplus_RM/H5AbstractDs_8h.html
 share/doc/html/hdf5/cpplus_RM/H5Alltypes_8h-source.html
 share/doc/html/hdf5/cpplus_RM/H5Alltypes_8h.html
+share/doc/html/hdf5/cpplus_RM/H5ArrayType_8cpp.html
+share/doc/html/hdf5/cpplus_RM/H5ArrayType_8h-source.html
+share/doc/html/hdf5/cpplus_RM/H5ArrayType_8h.html
 share/doc/html/hdf5/cpplus_RM/H5AtomType_8cpp.html
 share/doc/html/hdf5/cpplus_RM/H5AtomType_8h-source.html
 share/doc/html/hdf5/cpplus_RM/H5AtomType_8h.html
@@ -392,8 +395,6 @@ share/doc/html/hdf5/cpplus_RM/H5Group_8h.html
 share/doc/html/hdf5/cpplus_RM/H5IdComponent_8cpp.html
 share/doc/html/hdf5/cpplus_RM/H5IdComponent_8h-source.html
 share/doc/html/hdf5/cpplus_RM/H5IdComponent_8h.html
-share/doc/html/hdf5/cpplus_RM/H5Idtemplates_8h-source.html
-share/doc/html/hdf5/cpplus_RM/H5Idtemplates_8h.html
 share/doc/html/hdf5/cpplus_RM/H5Include_8h-source.html
 share/doc/html/hdf5/cpplus_RM/H5Include_8h.html
 share/doc/html/hdf5/cpplus_RM/H5IntType_8cpp.html
@@ -411,17 +412,22 @@ share/doc/html/hdf5/cpplus_RM/H5PredType_8h.html
 share/doc/html/hdf5/cpplus_RM/H5PropList_8cpp.html
 share/doc/html/hdf5/cpplus_RM/H5PropList_8h-source.html
 share/doc/html/hdf5/cpplus_RM/H5PropList_8h.html
-share/doc/html/hdf5/cpplus_RM/H5RefCounter_8cpp.html
-share/doc/html/hdf5/cpplus_RM/H5RefCounter_8h-source.html
-share/doc/html/hdf5/cpplus_RM/H5RefCounter_8h.html
 share/doc/html/hdf5/cpplus_RM/H5StrType_8cpp.html
 share/doc/html/hdf5/cpplus_RM/H5StrType_8h-source.html
 share/doc/html/hdf5/cpplus_RM/H5StrType_8h.html
+share/doc/html/hdf5/cpplus_RM/H5VarLenType_8cpp.html
+share/doc/html/hdf5/cpplus_RM/H5VarLenType_8h-source.html
+share/doc/html/hdf5/cpplus_RM/H5VarLenType_8h.html
 share/doc/html/hdf5/cpplus_RM/NCSAlogo.jpg
+share/doc/html/hdf5/cpplus_RM/RM_stylesheet.css
 share/doc/html/hdf5/cpplus_RM/annotated.html
+share/doc/html/hdf5/cpplus_RM/chunks_8cpp-example.html
 share/doc/html/hdf5/cpplus_RM/classH5_1_1AbstractDs-members.html
 share/doc/html/hdf5/cpplus_RM/classH5_1_1AbstractDs.html
 share/doc/html/hdf5/cpplus_RM/classH5_1_1AbstractDs.png
+share/doc/html/hdf5/cpplus_RM/classH5_1_1ArrayType-members.html
+share/doc/html/hdf5/cpplus_RM/classH5_1_1ArrayType.html
+share/doc/html/hdf5/cpplus_RM/classH5_1_1ArrayType.png
 share/doc/html/hdf5/cpplus_RM/classH5_1_1AtomType-members.html
 share/doc/html/hdf5/cpplus_RM/classH5_1_1AtomType.html
 share/doc/html/hdf5/cpplus_RM/classH5_1_1AtomType.png
@@ -514,32 +520,64 @@ share/doc/html/hdf5/cpplus_RM/classH5_1_1PropList.png
 share/doc/html/hdf5/cpplus_RM/classH5_1_1PropListIException-members.html
 share/doc/html/hdf5/cpplus_RM/classH5_1_1PropListIException.html
 share/doc/html/hdf5/cpplus_RM/classH5_1_1PropListIException.png
-share/doc/html/hdf5/cpplus_RM/classH5_1_1RefCounter-members.html
-share/doc/html/hdf5/cpplus_RM/classH5_1_1RefCounter.html
-share/doc/html/hdf5/cpplus_RM/classH5_1_1RefCounter_1_1RefCounter.html
-share/doc/html/hdf5/cpplus_RM/classH5_1_1RefCounter_1_1abc.html
 share/doc/html/hdf5/cpplus_RM/classH5_1_1ReferenceException-members.html
 share/doc/html/hdf5/cpplus_RM/classH5_1_1ReferenceException.html
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-share/doc/html/hdf5/cpplus_RM/classH5_1_1UserData4Aiterate-members.html
-share/doc/html/hdf5/cpplus_RM/classH5_1_1UserData4Aiterate.html
+share/doc/html/hdf5/cpplus_RM/classH5_1_1VarLenType-members.html
+share/doc/html/hdf5/cpplus_RM/classH5_1_1VarLenType.html
+share/doc/html/hdf5/cpplus_RM/classH5_1_1VarLenType.png
+share/doc/html/hdf5/cpplus_RM/compound_8cpp-example.html
 share/doc/html/hdf5/cpplus_RM/create_8cpp-example.html
 share/doc/html/hdf5/cpplus_RM/doxygen.css
 share/doc/html/hdf5/cpplus_RM/doxygen.png
-share/doc/html/hdf5/cpplus_RM/dsets_8cpp-example.html
 share/doc/html/hdf5/cpplus_RM/examples.html
+share/doc/html/hdf5/cpplus_RM/extend__ds_8cpp-example.html
 share/doc/html/hdf5/cpplus_RM/files.html
 share/doc/html/hdf5/cpplus_RM/functions.html
+share/doc/html/hdf5/cpplus_RM/functions_0x63.html
+share/doc/html/hdf5/cpplus_RM/functions_0x64.html
+share/doc/html/hdf5/cpplus_RM/functions_0x65.html
+share/doc/html/hdf5/cpplus_RM/functions_0x66.html
+share/doc/html/hdf5/cpplus_RM/functions_0x67.html
+share/doc/html/hdf5/cpplus_RM/functions_0x68.html
+share/doc/html/hdf5/cpplus_RM/functions_0x69.html
+share/doc/html/hdf5/cpplus_RM/functions_0x6c.html
+share/doc/html/hdf5/cpplus_RM/functions_0x6d.html
+share/doc/html/hdf5/cpplus_RM/functions_0x6e.html
+share/doc/html/hdf5/cpplus_RM/functions_0x6f.html
+share/doc/html/hdf5/cpplus_RM/functions_0x70.html
+share/doc/html/hdf5/cpplus_RM/functions_0x72.html
+share/doc/html/hdf5/cpplus_RM/functions_0x73.html
+share/doc/html/hdf5/cpplus_RM/functions_0x74.html
+share/doc/html/hdf5/cpplus_RM/functions_0x75.html
+share/doc/html/hdf5/cpplus_RM/functions_0x76.html
+share/doc/html/hdf5/cpplus_RM/functions_0x77.html
+share/doc/html/hdf5/cpplus_RM/functions_0x7e.html
+share/doc/html/hdf5/cpplus_RM/functions_func_0x63.html
+share/doc/html/hdf5/cpplus_RM/functions_func_0x64.html
+share/doc/html/hdf5/cpplus_RM/functions_func_0x65.html
+share/doc/html/hdf5/cpplus_RM/functions_func_0x66.html
+share/doc/html/hdf5/cpplus_RM/functions_func_0x67.html
+share/doc/html/hdf5/cpplus_RM/functions_func_0x68.html
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+share/doc/html/hdf5/cpplus_RM/functions_func_0x72.html
+share/doc/html/hdf5/cpplus_RM/functions_func_0x73.html
+share/doc/html/hdf5/cpplus_RM/functions_func_0x74.html
+share/doc/html/hdf5/cpplus_RM/functions_func_0x75.html
+share/doc/html/hdf5/cpplus_RM/functions_func_0x76.html
+share/doc/html/hdf5/cpplus_RM/functions_func_0x77.html
+share/doc/html/hdf5/cpplus_RM/functions_func_0x7e.html
 share/doc/html/hdf5/cpplus_RM/functions_func.html
 share/doc/html/hdf5/cpplus_RM/functions_vars.html
-share/doc/html/hdf5/cpplus_RM/globals.html
-share/doc/html/hdf5/cpplus_RM/globals_defs.html
-share/doc/html/hdf5/cpplus_RM/globals_func.html
-share/doc/html/hdf5/cpplus_RM/globals_type.html
-share/doc/html/hdf5/cpplus_RM/globals_vars.html
+share/doc/html/hdf5/cpplus_RM/h5group_8cpp-example.html
 share/doc/html/hdf5/cpplus_RM/header.html
 share/doc/html/hdf5/cpplus_RM/header_files/Dependencies
 share/doc/html/hdf5/cpplus_RM/header_files/filelist.xml
@@ -548,12 +586,9 @@ share/doc/html/hdf5/cpplus_RM/header_files/image002.jpg
 share/doc/html/hdf5/cpplus_RM/hierarchy.html
 share/doc/html/hdf5/cpplus_RM/index.html
 share/doc/html/hdf5/cpplus_RM/namespaceH5.html
-share/doc/html/hdf5/cpplus_RM/namespacemembers.html
-share/doc/html/hdf5/cpplus_RM/namespacemembers_func.html
-share/doc/html/hdf5/cpplus_RM/namespacemembers_type.html
-share/doc/html/hdf5/cpplus_RM/namespacemembers_vars.html
 share/doc/html/hdf5/cpplus_RM/namespaces.html
 share/doc/html/hdf5/cpplus_RM/namespacestd.html
+share/doc/html/hdf5/cpplus_RM/readdata_8cpp-example.html
 share/doc/html/hdf5/cpplus_RM/writedata_8cpp-example.html
 share/doc/html/hdf5/dataset_p1.gif
 share/doc/html/hdf5/ddl.html
diff --git a/devel/hdf5/distinfo b/devel/hdf5/distinfo
index 2a529aca864..ac2874af19e 100644
--- a/devel/hdf5/distinfo
+++ b/devel/hdf5/distinfo
@@ -1,8 +1,8 @@
-$NetBSD: distinfo,v 1.15 2005/08/30 01:31:21 dmcmahill Exp $
+$NetBSD: distinfo,v 1.16 2005/11/29 10:03:39 adam Exp $
 
-SHA1 (hdf5-1.6.4.tar.gz) = e419e81097b8093d16d96708b764bd85db053e86
-RMD160 (hdf5-1.6.4.tar.gz) = 8175af3153bb0a5a1278c01af2d3940f4fd5084f
-Size (hdf5-1.6.4.tar.gz) = 4862437 bytes
-SHA1 (patch-aa) = 187f8f866e0ba43cc704995f782828b35eebbbe5
-SHA1 (patch-ab) = 9e4316f83e2103ffc4ce24ebbb4519307d3c30a3
-SHA1 (patch-ac) = 64ef0b2c6785d8cf2f52ec946090a8c69b3e35e8
+SHA1 (hdf5-1.6.5.tar.gz) = ce27eb324b1acbf0da3d2b24b3c38f1fc03c2442
+RMD160 (hdf5-1.6.5.tar.gz) = 544c668d9349e9943767e776f5ece9c1aab75fcf
+Size (hdf5-1.6.5.tar.gz) = 4930666 bytes
+SHA1 (patch-aa) = 794ab1e1fbb41281c4b28a333f4bd91d37513084
+SHA1 (patch-ab) = 91829e06db57da7b96c513bd176ef33c134a1de3
+SHA1 (patch-ac) = 05c5215674ad32fe2d8f0fef06c26bdd20299536
diff --git a/devel/hdf5/patches/patch-aa b/devel/hdf5/patches/patch-aa
index d530469b8c8..919cfd6c7a8 100644
--- a/devel/hdf5/patches/patch-aa
+++ b/devel/hdf5/patches/patch-aa
@@ -1,8 +1,8 @@
-$NetBSD: patch-aa,v 1.7 2005/02/25 09:10:18 adam Exp $
+$NetBSD: patch-aa,v 1.8 2005/11/29 10:03:39 adam Exp $
 
---- config/commence.in.orig	2004-01-07 18:45:06.000000000 +0000
+--- config/commence.in.orig	2005-10-28 22:15:26.000000000 +0200
 +++ config/commence.in
-@@ -60,7 +60,7 @@ LT_UNINSTALL=$(LT) --mode=uninstall $(RM
+@@ -78,7 +78,7 @@ LT_UNINSTALL=$(LT) --mode=uninstall $(RM
  ## defined. The main makefile is free to redefine these to something else.
  DOCDIR=$(docdir)
  SUBDOCDIR=
diff --git a/devel/hdf5/patches/patch-ab b/devel/hdf5/patches/patch-ab
index 30b27baf17c..c39b76fad2a 100644
--- a/devel/hdf5/patches/patch-ab
+++ b/devel/hdf5/patches/patch-ab
@@ -1,60 +1,13 @@
-$NetBSD: patch-ab,v 1.5 2005/08/30 01:31:21 dmcmahill Exp $
+$NetBSD: patch-ab,v 1.6 2005/11/29 10:03:39 adam Exp $
 
---- configure.in.orig	2005-03-15 21:36:03.000000000 -0500
-+++ configure.in
-@@ -71,8 +71,9 @@ dnl that it actually does what it's supp
- dnl since configure relies upon tr heavily and there's no use continuing
- dnl if it's broken.
- dnl
--AC_MSG_CHECKING([if tr works])
--TR_TEST="`echo Test | tr 'a-z,' 'A-Z '`"
-+AC_PATH_PROG(TR, tr)
-+AC_MSG_CHECKING([if ${TR} works])
-+TR_TEST="`echo Test | ${TR} [a-z], [A-Z]\ `"
- if test $TR_TEST != "TEST"; then
-   AC_MSG_ERROR([tr program doesn't work])
- else
-@@ -528,6 +529,7 @@ AC_CHECK_LIB([m], [ceil])
+--- perform/Makefile.in.orig	2005-11-29 11:46:55.000000000 +0100
++++ perform/Makefile.in
+@@ -31,7 +31,7 @@ LIBTOOLS=../tools/lib/libh5tools.la
+ TEST_PROGS_PARA=h5perf
+ TEST_PROGS=iopipe chunk overhead zip_perf perf_meta
  
- if test "`uname`" = "SunOS" -o "`uname -sr`" = "HP-UX B.11.00"; then
-   dnl ...for Solaris
-+  AC_CHECK_LIB([socket], [socket])
-   AC_CHECK_LIB([nsl], [xdr_int])
- fi
+-PUB_PROGS=h5perf
++PUB_PROGS=
  
-@@ -1652,7 +1654,7 @@ case "X-$DEBUG_PKG" in
- esac
- 
- if test -n "$DEBUG_PKG"; then
--  for pkg in `echo $DEBUG_PKG | tr 'a-z,' 'A-Z '`; do
-+  for pkg in `echo $DEBUG_PKG | ${TR} "[a-z]," "[A-Z] "`; do
-     CPPFLAGS="$CPPFLAGS -DH5${pkg}_DEBUG"
-   done
- fi
-@@ -1819,7 +1821,7 @@ case "$CC_BASENAME" in
-     if (echo $cmd | grep / >/dev/null); then
-       path="`echo $cmd | sed 's/\(.*\)\/.*$/\1/'`"
-     else
--      for path in `echo $PATH | tr : ' '`; do
-+      for path in `echo $PATH | ${TR} ":" " "`; do
-         if test -x $path/$cmd; then
-           break
-         fi
-@@ -1850,7 +1852,7 @@ case "$CC_BASENAME" in
-     if (echo $cmd | grep / >/dev/null); then
-       path="`echo $cmd | sed 's/\(.*\)\/.*$/\1/'`"
-     else
--      for path in `echo $PATH | tr : ' '`; do
-+      for path in `echo $PATH | ${TR} ":" " "`; do
-         if test -x $path/$cmd; then
-           break
-         fi
-@@ -2100,7 +2102,7 @@ case "X-$FILTERS" in
- esac
- 
- if test -n "$FILTERS"; then
--  for filter in `echo $FILTERS | tr 'a-z,' 'A-Z '`; do
-+  for filter in `echo $FILTERS | ${TR} "[a-z]," "[A-Z] "`; do
-     dnl ------------------------------------------------------------------
-     dnl Have to use separate 'if' construct for each filter, so that
-     dnl autoheader can detect the AC_DEFINE for each one...
+ ## These are the files that `make clean' (and derivatives) will remove from
+ ## this directory.
diff --git a/devel/hdf5/patches/patch-ac b/devel/hdf5/patches/patch-ac
index 64a96a2ad1a..23b1654b915 100644
--- a/devel/hdf5/patches/patch-ac
+++ b/devel/hdf5/patches/patch-ac
@@ -1,69 +1,8 @@
-$NetBSD: patch-ac,v 1.5 2005/08/30 01:31:21 dmcmahill Exp $
+$NetBSD: patch-ac,v 1.6 2005/11/29 10:03:39 adam Exp $
 
---- configure.orig	2005-03-15 21:38:09.000000000 -0500
+--- configure.orig	2005-11-11 01:17:39.000000000 +0100
 +++ configure
-@@ -473,7 +473,7 @@ ac_includes_default="\
- # include <unistd.h>
- #endif"
- 
--ac_subst_vars='SHELL PATH_SEPARATOR PACKAGE_NAME PACKAGE_TARNAME PACKAGE_VERSION PACKAGE_STRING PACKAGE_BUGREPORT exec_prefix prefix program_transform_name bindir sbindir libexecdir datadir sysconfdir sharedstatedir localstatedir libdir includedir oldincludedir infodir mandir build_alias host_alias target_alias DEFS ECHO_C ECHO_N ECHO_T LIBS build build_cpu build_vendor build_os host host_cpu host_vendor host_os CPPFLAGS DEFAULT_LIBS HSIZET CC CFLAGS LDFLAGS ac_ct_CC EXEEXT OBJEXT config_dirs subdirs LT_STATIC_EXEC PERL AR SET_MAKE INSTALL_PROGRAM INSTALL_SCRIPT INSTALL_DATA LN_S ECHO RANLIB ac_ct_RANLIB STRIP ac_ct_STRIP CPP EGREP LIBTOOL USE_FILTER_DEFLATE USE_FILTER_SZIP SSL GASS TESTGASS SRB TESTSRB PDB2HDF PTHREAD DEBUG_PKG TRACE_API INSTRUMENT_LIBRARY PARALLEL RUNSERIAL RUNPARALLEL TESTPARALLEL MPE FILTERS USE_FILTER_SHUFFLE USE_FILTER_FLETCHER32 H5_VERSION CONFIG_DATE CONFIG_USER CONFIG_MODE BYTESEX STATIC_SHARED CC_VERSION ROOT DYNAMIC_DIRS HL SEARCH SETX LIBOBJS LTLIBOBJS'
-+ac_subst_vars='SHELL PATH_SEPARATOR PACKAGE_NAME PACKAGE_TARNAME PACKAGE_VERSION PACKAGE_STRING PACKAGE_BUGREPORT exec_prefix prefix program_transform_name bindir sbindir libexecdir datadir sysconfdir sharedstatedir localstatedir libdir includedir oldincludedir infodir mandir build_alias host_alias target_alias DEFS ECHO_C ECHO_N ECHO_T LIBS build build_cpu build_vendor build_os host host_cpu host_vendor host_os CPPFLAGS DEFAULT_LIBS TR HSIZET CC CFLAGS LDFLAGS ac_ct_CC EXEEXT OBJEXT config_dirs subdirs LT_STATIC_EXEC PERL AR SET_MAKE INSTALL_PROGRAM INSTALL_SCRIPT INSTALL_DATA LN_S ECHO RANLIB ac_ct_RANLIB STRIP ac_ct_STRIP CPP EGREP LIBTOOL USE_FILTER_DEFLATE USE_FILTER_SZIP SSL GASS TESTGASS SRB TESTSRB PDB2HDF PTHREAD DEBUG_PKG TRACE_API INSTRUMENT_LIBRARY PARALLEL RUNSERIAL RUNPARALLEL TESTPARALLEL MPE FILTERS USE_FILTER_SHUFFLE USE_FILTER_FLETCHER32 H5_VERSION CONFIG_DATE CONFIG_USER CONFIG_MODE BYTESEX STATIC_SHARED CC_VERSION ROOT DYNAMIC_DIRS HL SEARCH SETX LIBOBJS LTLIBOBJS'
- ac_subst_files='DEPEND COMMENCE CONCLUDE'
- 
- # Initialize some variables set by options.
-@@ -1630,9 +1630,48 @@ set >&5
- echo "$as_me:$LINENO: result: done" >&5
- echo "${ECHO_T}done" >&6
- 
--echo "$as_me:$LINENO: checking if tr works" >&5
--echo $ECHO_N "checking if tr works... $ECHO_C" >&6
--TR_TEST="`echo Test | tr 'a-z,' 'A-Z '`"
-+# Extract the first word of "tr", so it can be a program name with args.
-+set dummy tr; ac_word=$2
-+echo "$as_me:$LINENO: checking for $ac_word" >&5
-+echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6
-+if test "${ac_cv_path_TR+set}" = set; then
-+  echo $ECHO_N "(cached) $ECHO_C" >&6
-+else
-+  case $TR in
-+  [\\/]* | ?:[\\/]*)
-+  ac_cv_path_TR="$TR" # Let the user override the test with a path.
-+  ;;
-+  *)
-+  as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
-+for as_dir in $PATH
-+do
-+  IFS=$as_save_IFS
-+  test -z "$as_dir" && as_dir=.
-+  for ac_exec_ext in '' $ac_executable_extensions; do
-+  if $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
-+    ac_cv_path_TR="$as_dir/$ac_word$ac_exec_ext"
-+    echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
-+    break 2
-+  fi
-+done
-+done
-+
-+  ;;
-+esac
-+fi
-+TR=$ac_cv_path_TR
-+
-+if test -n "$TR"; then
-+  echo "$as_me:$LINENO: result: $TR" >&5
-+echo "${ECHO_T}$TR" >&6
-+else
-+  echo "$as_me:$LINENO: result: no" >&5
-+echo "${ECHO_T}no" >&6
-+fi
-+
-+echo "$as_me:$LINENO: checking if ${TR} works" >&5
-+echo $ECHO_N "checking if ${TR} works... $ECHO_C" >&6
-+TR_TEST="`echo Test | ${TR} [a-z], [A-Z]\ `"
- if test $TR_TEST != "TEST"; then
-   { { echo "$as_me:$LINENO: error: tr program doesn't work" >&5
- echo "$as_me: error: tr program doesn't work" >&2;}
-@@ -8141,6 +8180,80 @@ fi
+@@ -8154,6 +8154,80 @@ fi
  
  if test "`uname`" = "SunOS" -o "`uname -sr`" = "HP-UX B.11.00"; then
  
@@ -144,47 +83,3 @@ $NetBSD: patch-ac,v 1.5 2005/08/30 01:31:21 dmcmahill Exp $
  echo "$as_me:$LINENO: checking for xdr_int in -lnsl" >&5
  echo $ECHO_N "checking for xdr_int in -lnsl... $ECHO_C" >&6
  if test "${ac_cv_lib_nsl_xdr_int+set}" = set; then
-@@ -34825,7 +34938,7 @@ echo "${ECHO_T}$DEBUG_PKG" >&6
- esac
- 
- if test -n "$DEBUG_PKG"; then
--  for pkg in `echo $DEBUG_PKG | tr 'a-z,' 'A-Z '`; do
-+  for pkg in `echo $DEBUG_PKG | ${TR} "[a-z]," "[A-Z] "`; do
-     CPPFLAGS="$CPPFLAGS -DH5${pkg}_DEBUG"
-   done
- fi
-@@ -34999,7 +35112,7 @@ echo $ECHO_N "checking for mpirun... $EC
-     if (echo $cmd | grep / >/dev/null); then
-       path="`echo $cmd | sed 's/\(.*\)\/.*$/\1/'`"
-     else
--      for path in `echo $PATH | tr : ' '`; do
-+      for path in `echo $PATH | ${TR} ":" " "`; do
-         if test -x $path/$cmd; then
-           break
-         fi
-@@ -35029,7 +35142,7 @@ echo $ECHO_N "checking for mpirun_lam or
-     if (echo $cmd | grep / >/dev/null); then
-       path="`echo $cmd | sed 's/\(.*\)\/.*$/\1/'`"
-     else
--      for path in `echo $PATH | tr : ' '`; do
-+      for path in `echo $PATH | ${TR} ":" " "`; do
-         if test -x $path/$cmd; then
-           break
-         fi
-@@ -36455,7 +36568,7 @@ echo "${ECHO_T}$FILTERS" >&6
- esac
- 
- if test -n "$FILTERS"; then
--  for filter in `echo $FILTERS | tr 'a-z,' 'A-Z '`; do
-+  for filter in `echo $FILTERS | ${TR} "[a-z]," "[A-Z] "`; do
-                     if test $filter = "SHUFFLE"; then
- 
- cat >>confdefs.h <<\_ACEOF
-@@ -37344,6 +37457,7 @@ s,@host_vendor@,$host_vendor,;t t
- s,@host_os@,$host_os,;t t
- s,@CPPFLAGS@,$CPPFLAGS,;t t
- s,@DEFAULT_LIBS@,$DEFAULT_LIBS,;t t
-+s,@TR@,$TR,;t t
- s,@HSIZET@,$HSIZET,;t t
- s,@CC@,$CC,;t t
- s,@CFLAGS@,$CFLAGS,;t t