Update R to 0.64.2. Changes from 0.64.1:

NEW FEATURES

    o   new target for R installation testing :  make strict-tests.

    o   symnum(x) now nicely codes logical x.

    o   convolve() has a new type = c("circular", "open", "filter")
        argument allowing more than the only circular convolution.

    o   par(xpd) now has three settings:  FALSE (clip to plot region),
        TRUE (clip to figure region), or NA (clip to device region).

    o   zapsmall(x) works for complex x.

    o   new global variable R.version.string (for plots & reports).
        Deprecated version & Version for new  R.version & R.Version.

    o   R CMD Rd2dvi  has builtin "Usage" help and works for multiple files.
        Useful for automatic reference manual of a package.
        (doc/manual/lib2tex is more efficient for installed packages, however).

BUG FIXES

    o   power() is now fully implemented and documented.

    o   A couple of problems with group generic operations.

    o   A bug which meant that it was not possible to add elements
        to zero length lists in the obvious way has been fixed.
                x <- list(); x[[1]] <- 10
                x <- list(); x[["a"]] <- 11
        both now work.

    o   save.image() ignored dot-names. (esp. .First())

    o   lab= argument to plot() misinterpreted by axis() via ... passing

    o   NULL labels in text() caused segfault

    o   matrix(f,...) with f a factor now coerces to character

    o   documentation errors for substitute and is.vector, minor fixups for
        trig and nlm

    o   Background colours are set properly on X11 devices with
        colortype="pseudo": sometimes they were not allocated separately.

    o   C() works (again?) for a single argument.

    o   is.na() didn't work properly for "list" arguments.

    o   symnum() sometimes failed with arrays of rank >= 3.

    o   in some cases one could get nonblack color instead of
        black on 2nd x11() window.

    o   influence.measures(.) $ is.influential was wrong on the
        cooks.distance.

    o   printing of complex NaN/Inf was wrong as well.

    o   printing of complex named vectors had a wrong initial space.

    o   allow trailing space in character->numeric coercion

    o   library() gave wrong "masked" warnings in some cases.

    o   par(xpd) semantics were not compatible with S.

    o   rect() output was not clipped in PostScript.

    o   par(pin=c(width, height)) was behaving as par(pin=c(width, width)).

    o   Non-blank separated data files didn't have their 1st field
        handled properly.

    o   "aux" directory moved to "tools" to avoid difficulties on
        Windows.

    o   structure() clobbered factors with missing levels.

    o   pmatch() misbehaved on duplicate matches.

    o   R CMD Rd2dvi <file.Rd> works again.

    o   logical binops tried to set time series parameters before dimensions.

    o   upped the BUFSIZE in model.c (NOT proper long-term solution).

    o   dput(), dump() and deparse()  now always use DBL_DIG (=15) digits
        for numeric formatting.

    o   chull() now works for vertical borders, such as in chull(c(1,1,2),3:1).

3 files changed, 15 insertions, 31 deletions

diff --git a/math/R/patches/patch-ab b/math/R/patches/patch-ab
index a6ff02626f6..d609f0759a4 100644
--- a/math/R/patches/patch-ab
+++ b/math/R/patches/patch-ab
@@ -1,16 +1,8 @@
-$NetBSD: patch-ab,v 1.2 1999/05/25 23:45:06 jlam Exp $
+$NetBSD: patch-ab,v 1.3 1999/08/26 23:52:22 jlam Exp $
 
---- configure.orig	Fri May  7 06:25:40 1999
-+++ configure	Tue May 25 03:01:46 1999
-@@ -812,6 +812,7 @@
- test -z "$INSTALL_PROGRAM" && INSTALL_PROGRAM='${INSTALL}'
- 
- test -z "$INSTALL_DATA" && INSTALL_DATA='${INSTALL} -m 644'
-+test -z "$INSTALL_SCRIPT" && INSTALL_SCRIPT='${INSTALL} -m 755'
- 
- ## Fix a bug in autoconf---the path of the install shell script is
- ## not cached.  Could also use an absolute path in AC_CONFIG_AUX_DIR().
-@@ -3619,9 +3620,10 @@
+--- configure.orig	Fri Jul  2 08:23:14 1999
++++ configure	Thu Aug 26 18:32:19 1999
+@@ -3748,9 +3748,10 @@
      ;;
    *netbsd*)
      if ${CPP} - -dM < /dev/null | grep -q __ELF__; then
@@ -22,11 +14,3 @@ $NetBSD: patch-ab,v 1.2 1999/05/25 23:45:06 jlam Exp $
        SHLIBLDFLAGS="-Bshareable"
      fi
      ;;
-@@ -4746,6 +4748,7 @@
- s%@config_opts@%$config_opts%g
- s%@INSTALL_PROGRAM@%$INSTALL_PROGRAM%g
- s%@INSTALL_DATA@%$INSTALL_DATA%g
-+s%@INSTALL_SCRIPT@%$INSTALL_SCRIPT%g
- s%@LN_S@%$LN_S%g
- s%@RANLIB@%$RANLIB%g
- s%@YACC@%$YACC%g
diff --git a/math/R/patches/patch-ae b/math/R/patches/patch-ae
index 204d8e450a4..b4bc04a7333 100644
--- a/math/R/patches/patch-ae
+++ b/math/R/patches/patch-ae
@@ -1,8 +1,8 @@
-$NetBSD: patch-ae,v 1.1 1999/05/25 23:51:12 jlam Exp $
+$NetBSD: patch-ae,v 1.2 1999/08/26 23:52:22 jlam Exp $
 
---- Makefile.in.orig	Fri Apr 16 09:25:20 1999
-+++ Makefile.in	Tue May 25 02:48:46 1999
-@@ -49,15 +49,19 @@
+--- Makefile.in.orig	Mon Jun 28 09:46:08 1999
++++ Makefile.in	Thu Aug 26 18:41:20 1999
+@@ -49,16 +49,20 @@
  	    $(INSTALL_DATA) $${f} $(rhome); \
  	  done)
  	@echo "Installing executables ..."
@@ -14,10 +14,10 @@ $NetBSD: patch-ae,v 1.1 1999/05/25 23:51:12 jlam Exp $
  	@cat bin/R | sed "s@RHOME=.*@RHOME=$(rhome)@" > $(rhome)/bin/R
  	@cat bin/R | sed "s@RHOME=.*@RHOME=$(rhome)@" > $(bindir)/R
  	@chmod 755 $(bindir)/R $(rhome)/bin/R
--	@for f in `ls bin/* | grep -v '^bin/\(R\|R.binary\)\**$$'`; do \
+ 	@for f in `ls bin/* | grep -v '^bin/R\**$$' \
++                            | grep -v '^bin/R.gnome\**$$' \
+                             | grep -v '^bin/R.binary\**$$'`; do \
 -	  $(INSTALL) $${f} $(rhome)/bin; \
-+	@for f in \
-+	  `ls bin/* | grep -v '^bin/\(R\|R.binary\|R.gnome\)\**$$'`; do \
 +	  $(INSTALL_SCRIPT) $${f} $(rhome)/bin; \
  	done
  	@for f in Rd2txt Rdconv Rdindex Sd2Rd; do \
diff --git a/math/R/patches/patch-af b/math/R/patches/patch-af
index 3a1fb0438c5..6b3b784ead3 100644
--- a/math/R/patches/patch-af
+++ b/math/R/patches/patch-af
@@ -1,7 +1,7 @@
-$NetBSD: patch-af,v 1.1 1999/05/25 23:51:12 jlam Exp $
+$NetBSD: patch-af,v 1.2 1999/08/26 23:52:22 jlam Exp $
 
---- src/scripts/R.sh.in.orig	Thu May  6 04:32:27 1999
-+++ src/scripts/R.sh.in	Mon May 24 19:26:06 1999
+--- src/scripts/R.sh.in.orig	Wed May 12 03:12:32 1999
++++ src/scripts/R.sh.in	Thu Aug 26 18:44:22 1999
 @@ -47,7 +47,7 @@
  	echo "*** (maybe use \`run ${args}'  from *inside* ${deb}"
  	echo ""
@@ -11,7 +11,7 @@ $NetBSD: patch-af,v 1.1 1999/05/25 23:51:12 jlam Exp $
      --no-environ)
        USE_R_ENVIRON=false ;;
      --vanilla)
-@@ -106,7 +106,7 @@
+@@ -107,7 +107,7 @@
  if ${USE_R_ENVIRON}; then
    [ -r ${HOME}/.Renviron ] && . ${HOME}/.Renviron
  fi