diff options
author | rh <rh> | 2000-01-12 22:05:30 +0000 |
---|---|---|
committer | rh <rh> | 2000-01-12 22:05:30 +0000 |
commit | 2c89f87df562ec6f4c2d6626c6f125a6c71c3fe4 (patch) | |
tree | 079396c8c6b38c7988bc86dd82d6e8ffa0b1fb4d /math/R | |
parent | f3b679fe5dc938f1cc3f7496bd5677cfa9965984 (diff) | |
download | pkgsrc-2c89f87df562ec6f4c2d6626c6f125a6c71c3fe4.tar.gz |
Update R to 0.90.1. Changes are tons of changes and bugfixes, too
numerous to list here (see http://cran.r-project.org/src/base/NEWS for
more information).
Diffstat (limited to 'math/R')
-rw-r--r-- | math/R/Makefile | 14 | ||||
-rw-r--r-- | math/R/files/md5 | 4 | ||||
-rw-r--r-- | math/R/files/patch-sum | 10 | ||||
-rw-r--r-- | math/R/patches/patch-ab | 26 | ||||
-rw-r--r-- | math/R/patches/patch-ae | 26 | ||||
-rw-r--r-- | math/R/patches/patch-af | 35 | ||||
-rw-r--r-- | math/R/patches/patch-ag | 16 | ||||
-rw-r--r-- | math/R/pkg/PLIST | 3105 |
8 files changed, 1913 insertions, 1323 deletions
diff --git a/math/R/Makefile b/math/R/Makefile index ab5e52b0455..29232303869 100644 --- a/math/R/Makefile +++ b/math/R/Makefile @@ -1,9 +1,11 @@ -# $NetBSD: Makefile,v 1.10 1999/11/23 17:37:28 dmcmahill Exp $ +# $NetBSD: Makefile,v 1.11 2000/01/12 22:05:30 rh Exp $ # -DISTNAME= R-0.64.2 +DISTNAME= R-0.90.1 CATEGORIES= math -MASTER_SITES= http://lib.stat.cmu.edu/R/CRAN/src/base/ \ +MASTER_SITES= http://cran.r-project.org/src/base/ \ + ftp://cran.r-project.org/pub/R/src/base/ \ + http://lib.stat.cmu.edu/R/CRAN/src/base/ \ ftp://ftp.biostat.washington.edu/mirrors/R/CRAN/src/base/ \ http://cran.stat.wisc.edu/src/base/ \ http://SunSITE.auc.dk/R/src/base/ \ @@ -12,17 +14,19 @@ MASTER_SITES= http://lib.stat.cmu.edu/R/CRAN/src/base/ \ ftp://dola.snu.ac.kr/pub/R/CRAN/src/base/ \ http://stat.ethz.ch/CRAN/src/base/ \ http://www.stats.bris.ac.uk/R/src/base/ \ - ftp://ftp.ci.tuwien.ac.at/pub/R/src/base/ + http://cran.at.r-project.org/src/base/ \ + ftp://cran.at.r-project.org/pub/R/src/base/ EXTRACT_SUFX= .tgz MAINTAINER= jlam@netbsd.org -HOMEPAGE= http://lib.stat.cmu.edu/R/CRAN/ +HOMEPAGE= http://cran.r-project.org/ DEPENDS+= readline-4.0:../../devel/readline USE_FORTRAN= yes USE_X11= yes USE_PERL5= yes +USE_GMAKE= yes GNU_CONFIGURE= yes CONFIGURE_ARGS+=--enable-readline --with-x diff --git a/math/R/files/md5 b/math/R/files/md5 index 150634fb816..538804c453b 100644 --- a/math/R/files/md5 +++ b/math/R/files/md5 @@ -1,3 +1,3 @@ -$NetBSD: md5,v 1.4 1999/08/26 23:52:22 jlam Exp $ +$NetBSD: md5,v 1.5 2000/01/12 22:05:32 rh Exp $ -MD5 (R-0.64.2.tgz) = a25197e6ed875628de6bb9fc6ce34fe4 +MD5 (R-0.90.1.tgz) = 5ff7ed7ac53b7e968a373c9cf3099443 diff --git a/math/R/files/patch-sum b/math/R/files/patch-sum index 1697f356b42..bc3e59af526 100644 --- a/math/R/files/patch-sum +++ b/math/R/files/patch-sum @@ -1,8 +1,8 @@ -$NetBSD: patch-sum,v 1.2 1999/08/26 23:52:22 jlam Exp $ +$NetBSD: patch-sum,v 1.3 2000/01/12 22:05:32 rh Exp $ MD5 (patch-aa) = f11a1756dbe1f0d3499cce6919f5fce5 -MD5 (patch-ab) = 531d0693101c2643614367fc5e80fac3 -MD5 (patch-ae) = 15ea96c64228ee0836bac46a2a1c1c7e -MD5 (patch-af) = 16d1f1b836f457aaa14127658fde33b8 -MD5 (patch-ag) = bc27506dada75af67da6905b2bac982d +MD5 (patch-ab) = f7eba6b61875f0e55bc8edd1eca67c39 +MD5 (patch-ae) = 97a850f5efd0f91571361750e69b35eb +MD5 (patch-af) = 67bcec4540b994104ba99b35667f6d10 +MD5 (patch-ag) = 62f3628549a1e9a4c1440e05548f2cb1 MD5 (patch-ah) = 37e5d8f9aa3a296a62150a8269415807 diff --git a/math/R/patches/patch-ab b/math/R/patches/patch-ab index d609f0759a4..08423e2bb5f 100644 --- a/math/R/patches/patch-ab +++ b/math/R/patches/patch-ab @@ -1,16 +1,24 @@ -$NetBSD: patch-ab,v 1.3 1999/08/26 23:52:22 jlam Exp $ +$NetBSD: patch-ab,v 1.4 2000/01/12 22:05:32 rh Exp $ ---- configure.orig Fri Jul 2 08:23:14 1999 -+++ configure Thu Aug 26 18:32:19 1999 -@@ -3748,9 +3748,10 @@ +--- configure.orig Wed Dec 15 13:29:04 1999 ++++ configure Wed Jan 12 21:19:24 2000 +@@ -5377,9 +5377,10 @@ ;; *netbsd*) if ${CPP} - -dM < /dev/null | grep -q __ELF__; then -- DLLFLAGS="-export-dynamic" -+ DLLFLAGS="${LDFLAGS} -export-dynamic" - SHLIBLDFLAGS="-shared" +- dllflags="-export-dynamic" ++ dllflags="${LDFLAGS} -export-dynamic" + shlibldflags="-shared" else -+ DLLFLAGS="${LDFLAGS}" - SHLIBLDFLAGS="-Bshareable" ++ dllflags="${LDFLAGS}" + shlibldflags="-Bshareable" fi ;; +@@ -6548,6 +6549,7 @@ + s%@AWK@%$AWK%g + s%@INSTALL_PROGRAM@%$INSTALL_PROGRAM%g + s%@INSTALL_DATA@%$INSTALL_DATA%g ++s%@INSTALL_SCRIPT@%$INSTALL_SCRIPT%g + s%@LN_S@%$LN_S%g + s%@RANLIB@%$RANLIB%g + s%@YACC@%$YACC%g diff --git a/math/R/patches/patch-ae b/math/R/patches/patch-ae index b4bc04a7333..06167e144b7 100644 --- a/math/R/patches/patch-ae +++ b/math/R/patches/patch-ae @@ -1,22 +1,20 @@ -$NetBSD: patch-ae,v 1.2 1999/08/26 23:52:22 jlam Exp $ +$NetBSD: patch-ae,v 1.3 2000/01/12 22:05:33 rh Exp $ ---- Makefile.in.orig Mon Jun 28 09:46:08 1999 -+++ Makefile.in Thu Aug 26 18:41:20 1999 -@@ -49,16 +49,20 @@ +--- Makefile.in.orig Wed Jan 12 20:01:29 2000 ++++ Makefile.in Wed Jan 12 20:07:14 2000 +@@ -51,7 +51,7 @@ $(INSTALL_DATA) $${f} $(rhome); \ done) @echo "Installing executables ..." -- @$(INSTALL_PROGRAM) bin/R.binary $(rhome)/bin -+ @$(INSTALL_PROGRAM) bin/R.binary $(bindir) -+ @if [ -f bin/R.gnome ]; then \ -+ $(INSTALL_PROGRAM) bin/R.gnome $(bindir); \ -+ fi - @cat bin/R | sed "s@RHOME=.*@RHOME=$(rhome)@" > $(rhome)/bin/R - @cat bin/R | sed "s@RHOME=.*@RHOME=$(rhome)@" > $(bindir)/R - @chmod 755 $(bindir)/R $(rhome)/bin/R +- @$(INSTALL_PROGRAM) bin/R.X11 $(rhome)/bin ++ @$(INSTALL_PROGRAM) bin/R.X11 $(bindir) + @if test -x bin/R.gnome; then \ + $(INSTALL_PROGRAM) bin/R.gnome $(rhome)/bin; \ + fi +@@ -61,10 +61,10 @@ @for f in `ls bin/* | grep -v '^bin/R\**$$' \ -+ | grep -v '^bin/R.gnome\**$$' \ - | grep -v '^bin/R.binary\**$$'`; do \ + | grep -v '^bin/R.X11\**$$' \ + | grep -v '^bin/R.gnome\**$$'`; do \ - $(INSTALL) $${f} $(rhome)/bin; \ + $(INSTALL_SCRIPT) $${f} $(rhome)/bin; \ done diff --git a/math/R/patches/patch-af b/math/R/patches/patch-af index 6b3b784ead3..9c029334f2c 100644 --- a/math/R/patches/patch-af +++ b/math/R/patches/patch-af @@ -1,22 +1,21 @@ -$NetBSD: patch-af,v 1.2 1999/08/26 23:52:22 jlam Exp $ +$NetBSD: patch-af,v 1.3 2000/01/12 22:05:33 rh Exp $ ---- src/scripts/R.sh.in.orig Wed May 12 03:12:32 1999 -+++ src/scripts/R.sh.in Thu Aug 26 18:44:22 1999 -@@ -47,7 +47,7 @@ - echo "*** (maybe use \`run ${args}' from *inside* ${deb}" - echo "" - fi -- exec ${deb} ${RHOME}/bin/${R_BINARY} ;; -+ exec ${deb} @prefix@/bin/${R_BINARY} ;; - --no-environ) - USE_R_ENVIRON=false ;; - --vanilla) -@@ -107,7 +107,7 @@ - if ${USE_R_ENVIRON}; then - [ -r ${HOME}/.Renviron ] && . ${HOME}/.Renviron +--- src/scripts/R.sh.in.orig Wed Jan 12 20:12:45 2000 ++++ src/scripts/R.sh.in Wed Jan 12 20:15:02 2000 +@@ -114,14 +114,14 @@ + fi + + if test -z "${DBG}"; then +- exec ${R_HOME}/bin/${R_BINARY} @R_BATCHSAVE@ ${ARGS} ++ exec @prefix@/bin/${R_BINARY} @R_BATCHSAVE@ ${ARGS} + else + if test -n "${ARGS}"; then + echo "*** Further command line arguments (\`${ARGS}') disregarded" + echo "*** (maybe use \`run ${ARGS}' from *inside* ${DBG})" + echo "" + fi +- exec ${DBG} ${R_HOME}/bin/${R_BINARY} ++ exec ${DBG} @prefix@/bin/${R_BINARY} fi --exec ${RHOME}/bin/${R_BINARY} @R_BATCHSAVE@ ${ARGS} -+exec @prefix@/bin/${R_BINARY} @R_BATCHSAVE@ ${ARGS} ### Local Variables: *** - ### mode: sh *** diff --git a/math/R/patches/patch-ag b/math/R/patches/patch-ag index ad2e98a3e17..b497b64ddbd 100644 --- a/math/R/patches/patch-ag +++ b/math/R/patches/patch-ag @@ -1,17 +1,17 @@ -$NetBSD: patch-ag,v 1.1 1999/05/25 23:51:12 jlam Exp $ +$NetBSD: patch-ag,v 1.2 2000/01/12 22:05:33 rh Exp $ ---- src/scripts/Makefile.in.orig Fri Mar 5 11:19:10 1999 -+++ src/scripts/Makefile.in Tue May 25 02:39:25 1999 -@@ -26,10 +26,10 @@ - (cd $(top_builddir); sed "s@RHOME=.*@RHOME=`pwd`@" > bin/R) +--- src/scripts/Makefile.in.orig Wed Jan 12 20:16:55 2000 ++++ src/scripts/Makefile.in Wed Jan 12 20:17:56 2000 +@@ -38,10 +38,10 @@ + > $(top_builddir)/bin/R @chmod +x $(top_builddir)/bin/R - @for f in $(SRC_SCRIPTS); do \ + @for f in $(SCRIPTS_S); do \ - $(INSTALL) $(srcdir)/$$f $(top_builddir)/bin; \ + $(INSTALL_SCRIPT) $(srcdir)/$$f $(top_builddir)/bin; \ done - @for f in $(OBJ_SCRIPTS); do \ + @for f in $(SCRIPTS_B); do \ - $(INSTALL) $$f $(top_builddir)/bin; \ + $(INSTALL_SCRIPT) $$f $(top_builddir)/bin; \ done - mostlyclean: clean + $(SCRIPTS_B): $(top_builddir)/config.status diff --git a/math/R/pkg/PLIST b/math/R/pkg/PLIST index d7361e77c9b..06bc66db66a 100644 --- a/math/R/pkg/PLIST +++ b/math/R/pkg/PLIST @@ -1,56 +1,19 @@ -@comment $NetBSD: PLIST,v 1.4 1999/08/26 23:52:22 jlam Exp $ +@comment $NetBSD: PLIST,v 1.5 2000/01/12 22:05:33 rh Exp $ bin/R -bin/R.binary +bin/R.X11 bin/Rd2txt bin/Rdconv bin/Rdindex bin/Sd2Rd man/man1/R.1 -man/man1/Rd2txt.1 man/man1/Rdconv.1 -man/man1/Rdindex.1 +man/man1/Rd2txt.1 man/man1/Sd2Rd.1 -share/R/COPYING -share/R/COPYRIGHTS -share/R/MIRROR-SITES -share/R/RESOURCES -share/R/afm/agd_____.lt1 -share/R/afm/agdo____.lt1 -share/R/afm/agw_____.lt1 -share/R/afm/agwo____.lt1 -share/R/afm/bkd_____.lt1 -share/R/afm/bkdi____.lt1 -share/R/afm/bkl_____.lt1 -share/R/afm/bkli____.lt1 -share/R/afm/cob_____.lt1 -share/R/afm/cobo____.lt1 -share/R/afm/com_____.lt1 -share/R/afm/coo_____.lt1 -share/R/afm/hv______.lt1 -share/R/afm/hvb_____.lt1 -share/R/afm/hvbo____.lt1 -share/R/afm/hvn_____.lt1 -share/R/afm/hvnb____.lt1 -share/R/afm/hvnbo___.lt1 -share/R/afm/hvno____.lt1 -share/R/afm/hvo_____.lt1 -share/R/afm/ncb_____.lt1 -share/R/afm/ncbi____.lt1 -share/R/afm/nci_____.lt1 -share/R/afm/ncr_____.lt1 -share/R/afm/pob_____.lt1 -share/R/afm/pobi____.lt1 -share/R/afm/poi_____.lt1 -share/R/afm/por_____.lt1 -share/R/afm/sy______.afm -share/R/afm/tib_____.lt1 -share/R/afm/tibi____.lt1 -share/R/afm/tii_____.lt1 -share/R/afm/tir_____.lt1 +man/man1/Rdindex.1 +share/R/bin/R share/R/bin/BATCH share/R/bin/COMPILE share/R/bin/INSTALL -share/R/bin/R share/R/bin/REMOVE share/R/bin/Rd2contents share/R/bin/Rd2dvi @@ -70,55 +33,6 @@ share/R/bin/help.pretty share/R/bin/html2dos share/R/bin/massage-Examples share/R/bin/pager -share/R/demos/dynload/Makefile -share/R/demos/dynload/README -share/R/demos/dynload/zero.R -share/R/demos/dynload/zero.c -share/R/demos/graphics/graphics.R -share/R/demos/graphics/image.R -share/R/demos/language/is-things.R -share/R/demos/language/recursion.R -share/R/demos/language/scoping.R -share/R/demos/models/glm-v+r.R -share/R/demos/models/lm+glm.R -share/R/demos/nlm/valley.R -share/R/doc/KEYWORDS -share/R/doc/html/about.html -share/R/doc/html/authors.html -share/R/doc/html/function.html -share/R/doc/html/index.html -share/R/doc/html/left.jpg -share/R/doc/html/logo.jpg -share/R/doc/html/logosm.jpg -share/R/doc/html/packages-foot.html -share/R/doc/html/packages-head.html -share/R/doc/html/packages.html -share/R/doc/html/resource.html -share/R/doc/html/right.jpg -share/R/doc/html/search/IndexEntry.class -share/R/doc/html/search/IndexStream.class -share/R/doc/html/search/IndexTable.class -share/R/doc/html/search/SearchEngine.class -share/R/doc/html/search/SearchEngine.html -share/R/doc/html/search/Tracer.class -share/R/doc/html/search/Value.class -share/R/doc/html/search/index.txt -share/R/doc/html/template.html -share/R/doc/html/thanks.html -share/R/doc/html/up.jpg -share/R/doc/keyword-test -share/R/doc/manual/Manual.tex -share/R/doc/manual/Rd.sty -share/R/doc/manual/Rd2dvi.tex -share/R/doc/manual/Reference.tex -share/R/doc/manual/plotmath.tex -share/R/doc/manual/primitive-funs.tex -share/R/doc/manual/programming.tex -share/R/doc/manual/writing-Rd.tex -share/R/etc/Makeconf -share/R/etc/Rdconvlib.pl -share/R/etc/buildlib.pl -share/R/etc/html-layout.pl share/R/include/Applic.h share/R/include/Arith.h share/R/include/Blas.h @@ -129,18 +43,311 @@ share/R/include/Fortran.h share/R/include/Linpack.h share/R/include/Mathlib.h share/R/include/Memory.h -share/R/include/Platform.h share/R/include/PrtUtil.h share/R/include/Random.h +share/R/include/Rconfig.h +share/R/include/Rdefines.h share/R/include/Rinternals.h +share/R/include/Rversion.h share/R/include/S.h share/R/include/S_compat.h share/R/include/Utils.h share/R/include/f2c.h -share/R/library/LibIndex -share/R/library/base/CONTENTS -share/R/library/base/INDEX -share/R/library/base/R-ex/Arithmetic.R +share/R/library/nls/help/sortedXyData +share/R/library/nls/help/00Titles +share/R/library/nls/help/BOD +share/R/library/nls/help/NLSstAsymptotic +share/R/library/nls/help/NLSstClosestX +share/R/library/nls/help/NLSstLfAsymptote +share/R/library/nls/help/NLSstRtAsymptote +share/R/library/nls/help/SSasymp +share/R/library/nls/help/SSasympOff +share/R/library/nls/help/SSasympOrig +share/R/library/nls/help/SSbiexp +share/R/library/nls/help/SSfol +share/R/library/nls/help/SSfpl +share/R/library/nls/help/SSlogis +share/R/library/nls/help/SSmicmen +share/R/library/nls/help/asOneSidedFormula +share/R/library/nls/help/clearNames +share/R/library/nls/help/formula.nls +share/R/library/nls/help/getInitial +share/R/library/nls/help/logLik +share/R/library/nls/help/nls +share/R/library/nls/help/nls.control +share/R/library/nls/help/nlsModel +share/R/library/nls/help/plot.profile.nls +share/R/library/nls/help/predict.nls +share/R/library/nls/help/profile.nls +share/R/library/nls/help/profiler +share/R/library/nls/help/profiler.nls +share/R/library/nls/help/selfStart +share/R/library/nls/help/selfStart.default +share/R/library/nls/help/selfStart.formula +share/R/library/nls/help/setNames +share/R/library/nls/help/AnIndex +share/R/library/nls/R-ex/sortedXyData.R +share/R/library/nls/R-ex/NLSstAsymptotic.R +share/R/library/nls/R-ex/NLSstClosestX.R +share/R/library/nls/R-ex/NLSstLfAsymptote.R +share/R/library/nls/R-ex/NLSstRtAsymptote.R +share/R/library/nls/R-ex/SSasymp.R +share/R/library/nls/R-ex/SSasympOff.R +share/R/library/nls/R-ex/SSasympOrig.R 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share/R/library/base/R-ex/Bessel.R share/R/library/base/R-ex/Beta.R share/R/library/base/R-ex/Binomial.R @@ -149,27 +356,34 @@ share/R/library/base/R-ex/Chisquare.R share/R/library/base/R-ex/Comparison.R share/R/library/base/R-ex/Constants.R share/R/library/base/R-ex/Control.R -share/R/library/base/R-ex/Deprecated.R share/R/library/base/R-ex/Exponential.R share/R/library/base/R-ex/Extract.R share/R/library/base/R-ex/Extremes.R share/R/library/base/R-ex/FDist.R +share/R/library/base/R-ex/Formaldehyde.R share/R/library/base/R-ex/GammaDist.R share/R/library/base/R-ex/Geometric.R +share/R/library/base/R-ex/HairEyeColor.R share/R/library/base/R-ex/Hyperbolic.R share/R/library/base/R-ex/Hypergeometric.R share/R/library/base/R-ex/IQR.R +share/R/library/base/R-ex/InsectSprays.R +share/R/library/base/R-ex/Last.value.R share/R/library/base/R-ex/Log.R +share/R/library/base/R-ex/c.R +share/R/library/base/R-ex/LifeCycleSavings.R share/R/library/base/R-ex/Logic.R share/R/library/base/R-ex/Logistic.R 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share/R/library/base/R-ex/Uniform.R +share/R/library/base/R-ex/VADeaths.R share/R/library/base/R-ex/Version.R share/R/library/base/R-ex/Weibull.R share/R/library/base/R-ex/Wilcoxon.R @@ -188,10 +409,14 @@ share/R/library/base/R-ex/abbreviate.R share/R/library/base/R-ex/abline.R share/R/library/base/R-ex/add1.R share/R/library/base/R-ex/aggregate.R +share/R/library/base/R-ex/airmiles.R +share/R/library/base/R-ex/airquality.R share/R/library/base/R-ex/alias.R share/R/library/base/R-ex/all.R +share/R/library/base/R-ex/all.equal.R share/R/library/base/R-ex/allnames.R share/R/library/base/R-ex/anscombe.R +share/R/library/base/R-ex/any.R share/R/library/base/R-ex/aov.R share/R/library/base/R-ex/aperm.R share/R/library/base/R-ex/append.R @@ -204,6 +429,8 @@ share/R/library/base/R-ex/arrows.R share/R/library/base/R-ex/as.function.R share/R/library/base/R-ex/assign.R share/R/library/base/R-ex/attach.R +share/R/library/base/R-ex/attenu.R +share/R/library/base/R-ex/attitude.R share/R/library/base/R-ex/attr.R share/R/library/base/R-ex/attributes.R share/R/library/base/R-ex/autoload.R @@ -214,9 +441,10 @@ share/R/library/base/R-ex/barplot.R share/R/library/base/R-ex/body.R share/R/library/base/R-ex/box.R share/R/library/base/R-ex/boxplot.R +share/R/library/base/R-ex/boxplot.default.R +share/R/library/base/R-ex/boxplot.formula.R share/R/library/base/R-ex/boxplot.stats.R share/R/library/base/R-ex/bxp.R -share/R/library/base/R-ex/c.R share/R/library/base/R-ex/call.R share/R/library/base/R-ex/case.names.R share/R/library/base/R-ex/cat.R @@ -227,30 +455,33 @@ share/R/library/base/R-ex/chisq.test.R share/R/library/base/R-ex/chol.R share/R/library/base/R-ex/chol2inv.R share/R/library/base/R-ex/chull.R +share/R/library/base/R-ex/co2.R share/R/library/base/R-ex/codes.R share/R/library/base/R-ex/coefficients.R share/R/library/base/R-ex/col.R share/R/library/base/R-ex/colnames.R share/R/library/base/R-ex/colors.R +share/R/library/base/R-ex/commandArgs.R 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