py-tables: update to 3.7.0.

This is a minor version of PyTables.  The main feature added is that
compatibility with Python 3.10, numpy 1.21 and HDF5 1.12 has been improved,
while support for Python 3.5 has been dropped.

The CI infrastructure has been moved to GitHub Actions.

3 files changed, 34 insertions, 12 deletions

diff --git a/math/py-tables/Makefile b/math/py-tables/Makefile
index 6e7459a3cbc..d626b385a39 100644
--- a/math/py-tables/Makefile
+++ b/math/py-tables/Makefile
@@ -1,8 +1,7 @@
-# $NetBSD: Makefile,v 1.10 2022/01/04 20:54:17 wiz Exp $
+# $NetBSD: Makefile,v 1.11 2022/01/05 07:05:39 wiz Exp $
 
-DISTNAME=	tables-3.6.1
+DISTNAME=	tables-3.7.0
 PKGNAME=	${PYPKGPREFIX}-${DISTNAME}
-PKGREVISION=	2
 CATEGORIES=	math python
 MASTER_SITES=	${MASTER_SITE_PYPI:=t/tables/}
 
@@ -16,10 +15,8 @@ PYSETUPBUILDARGS+=	--bzip2=${BUILDLINK_PREFIX.bzip2}
 PYSETUPBUILDARGS+=	--hdf5=${BUILDLINK_PREFIX.hdf5}
 PYSETUPBUILDARGS+=	--lzo=${BUILDLINK_PREFIX.lzo}
 
-DEPENDS+=	${PYPKGPREFIX}-cython-[0-9]*:../../devel/py-cython
+DEPENDS+=	${PYPKGPREFIX}-packaging-[0-9]*:../../devel/py-packaging
 DEPENDS+=	${PYPKGPREFIX}-numexpr>=2.6.2:../../math/py-numexpr
-DEPENDS+=	${PYPKGPREFIX}-mock>=2.0:../../devel/py-mock
-DEPENDS+=	${PYPKGPREFIX}-six>=1.9.0:../../lang/py-six
 
 USE_LANGUAGES=	c c++
 
@@ -32,8 +29,11 @@ post-install:
 	${MV} ptrepack ptrepack-${PYVERSSUFFIX} && \
 	${MV} pttree pttree-${PYVERSSUFFIX} || ${TRUE}
 
+# needs to be installed first
+# as of 3.7.0:
+# FAILED (errors=2, skipped=55)
 do-test:
-	cd ${WRKSRC}/tables/tests && ${PYTHONBIN} test_all.py
+	${PYTHONBIN} -m tables.tests.test_all
 
 .include "../../archivers/bzip2/buildlink3.mk"
 .include "../../archivers/lzo/buildlink3.mk"
diff --git a/math/py-tables/PLIST b/math/py-tables/PLIST
index 5a67ea78a2e..5acdfeb120b 100644
--- a/math/py-tables/PLIST
+++ b/math/py-tables/PLIST
@@ -1,4 +1,4 @@
-@comment $NetBSD: PLIST,v 1.3 2019/11/13 20:56:08 adam Exp $
+@comment $NetBSD: PLIST,v 1.4 2022/01/05 07:05:39 wiz Exp $
 bin/pt2to3-${PYVERSSUFFIX}
 bin/ptdump-${PYVERSSUFFIX}
 bin/ptrepack-${PYVERSSUFFIX}
@@ -13,7 +13,11 @@ ${PYSITELIB}/${EGG_INFODIR}/top_level.txt
 ${PYSITELIB}/tables/__init__.py
 ${PYSITELIB}/tables/__init__.pyc
 ${PYSITELIB}/tables/__init__.pyo
+${PYSITELIB}/tables/_comp_bzip2.c
+${PYSITELIB}/tables/_comp_bzip2.pyx
 ${PYSITELIB}/tables/_comp_bzip2.so
+${PYSITELIB}/tables/_comp_lzo.c
+${PYSITELIB}/tables/_comp_lzo.pyx
 ${PYSITELIB}/tables/_comp_lzo.so
 ${PYSITELIB}/tables/array.py
 ${PYSITELIB}/tables/array.pyc
@@ -30,6 +34,7 @@ ${PYSITELIB}/tables/carray.pyo
 ${PYSITELIB}/tables/conditions.py
 ${PYSITELIB}/tables/conditions.pyc
 ${PYSITELIB}/tables/conditions.pyo
+${PYSITELIB}/tables/definitions.pxd
 ${PYSITELIB}/tables/description.py
 ${PYSITELIB}/tables/description.pyc
 ${PYSITELIB}/tables/description.pyo
@@ -54,6 +59,9 @@ ${PYSITELIB}/tables/flavor.pyo
 ${PYSITELIB}/tables/group.py
 ${PYSITELIB}/tables/group.pyc
 ${PYSITELIB}/tables/group.pyo
+${PYSITELIB}/tables/hdf5extension.c
+${PYSITELIB}/tables/hdf5extension.pxd
+${PYSITELIB}/tables/hdf5extension.pyx
 ${PYSITELIB}/tables/hdf5extension.so
 ${PYSITELIB}/tables/idxutils.py
 ${PYSITELIB}/tables/idxutils.pyc
@@ -64,6 +72,8 @@ ${PYSITELIB}/tables/index.pyo
 ${PYSITELIB}/tables/indexes.py
 ${PYSITELIB}/tables/indexes.pyc
 ${PYSITELIB}/tables/indexes.pyo
+${PYSITELIB}/tables/indexesextension.c
+${PYSITELIB}/tables/indexesextension.pyx
 ${PYSITELIB}/tables/indexesextension.so
 ${PYSITELIB}/tables/leaf.py
 ${PYSITELIB}/tables/leaf.pyc
@@ -71,7 +81,12 @@ ${PYSITELIB}/tables/leaf.pyo
 ${PYSITELIB}/tables/link.py
 ${PYSITELIB}/tables/link.pyc
 ${PYSITELIB}/tables/link.pyo
+${PYSITELIB}/tables/linkextension.c
+${PYSITELIB}/tables/linkextension.pyx
 ${PYSITELIB}/tables/linkextension.so
+${PYSITELIB}/tables/lrucacheextension.c
+${PYSITELIB}/tables/lrucacheextension.pxd
+${PYSITELIB}/tables/lrucacheextension.pyx
 ${PYSITELIB}/tables/lrucacheextension.so
 ${PYSITELIB}/tables/misc/__init__.py
 ${PYSITELIB}/tables/misc/__init__.pyc
@@ -130,6 +145,8 @@ ${PYSITELIB}/tables/scripts/pttree.pyo
 ${PYSITELIB}/tables/table.py
 ${PYSITELIB}/tables/table.pyc
 ${PYSITELIB}/tables/table.pyo
+${PYSITELIB}/tables/tableextension.c
+${PYSITELIB}/tables/tableextension.pyx
 ${PYSITELIB}/tables/tableextension.so
 ${PYSITELIB}/tables/tests/Table2_1_lzo_nrv2e_shuffle.h5
 ${PYSITELIB}/tables/tests/Tables_lzo1.h5
@@ -149,6 +166,7 @@ ${PYSITELIB}/tables/tests/check_leaks.pyo
 ${PYSITELIB}/tables/tests/common.py
 ${PYSITELIB}/tables/tests/common.pyc
 ${PYSITELIB}/tables/tests/common.pyo
+${PYSITELIB}/tables/tests/create-nested-type.c
 ${PYSITELIB}/tables/tests/create_backcompat_indexes.py
 ${PYSITELIB}/tables/tests/create_backcompat_indexes.pyc
 ${PYSITELIB}/tables/tests/create_backcompat_indexes.pyo
@@ -167,6 +185,7 @@ ${PYSITELIB}/tables/tests/matlab_file.mat
 ${PYSITELIB}/tables/tests/nested-type-with-gaps.h5
 ${PYSITELIB}/tables/tests/non-chunked-table.h5
 ${PYSITELIB}/tables/tests/oldflavor_numeric.h5
+${PYSITELIB}/tables/tests/out_of_order_types.h5
 ${PYSITELIB}/tables/tests/python2.h5
 ${PYSITELIB}/tables/tests/python3.h5
 ${PYSITELIB}/tables/tests/scalar.h5
@@ -292,6 +311,9 @@ ${PYSITELIB}/tables/unimplemented.pyo
 ${PYSITELIB}/tables/utils.py
 ${PYSITELIB}/tables/utils.pyc
 ${PYSITELIB}/tables/utils.pyo
+${PYSITELIB}/tables/utilsextension.c
+${PYSITELIB}/tables/utilsextension.pxd
+${PYSITELIB}/tables/utilsextension.pyx
 ${PYSITELIB}/tables/utilsextension.so
 ${PYSITELIB}/tables/vlarray.py
 ${PYSITELIB}/tables/vlarray.pyc
diff --git a/math/py-tables/distinfo b/math/py-tables/distinfo
index 84607f876ba..209196fbe5d 100644
--- a/math/py-tables/distinfo
+++ b/math/py-tables/distinfo
@@ -1,5 +1,5 @@
-$NetBSD: distinfo,v 1.6 2021/10/26 10:56:05 nia Exp $
+$NetBSD: distinfo,v 1.7 2022/01/05 07:05:39 wiz Exp $
 
-BLAKE2s (tables-3.6.1.tar.gz) = 4a1615c8c25736fc4b1c10f11b8f72552c417d2f35dc9e376cb56dc705202c8f
-SHA512 (tables-3.6.1.tar.gz) = 7f018b70251095049bce9075be4e19f72efba9d39121a35c4521f634b1dd5b81ab6de47df3bb44ad6b8b2dbdbff4e6d0985ad1a7b2f13b44f920c0935e5830ff
-Size (tables-3.6.1.tar.gz) = 4641089 bytes
+BLAKE2s (tables-3.7.0.tar.gz) = a49638994427991e7285e80cee2746ddf81078fb123ca6291325951b0e41c684
+SHA512 (tables-3.7.0.tar.gz) = eaa368d063b5fad87e6d0f9ab6f02da0b2a3542740a52fe8c2bb58e41121495d07b6d2710ad402a28891294aa61a11238c6a7e2cf2933a1bb11391b79cf4fd13
+Size (tables-3.7.0.tar.gz) = 8227955 bytes