Add package R-RNetCDF version 1.9-1

An R interface to the NetCDF file format designed by Unidata for
efficient storage of array-oriented scientific data and descriptions.
The R interface is closely based on the C API of the NetCDF library,
and it includes calendar conversions from the Unidata UDUNITS library.
The current implementation supports all operations on NetCDF datasets
in classic and 64-bit offset file formats, and NetCDF4-classic format
is supported for reading and modification of existing files.

From Kai-Uwe Eckhardt, updated as the previous distfile wasn't available.

PR pkg/51607

5 files changed, 68 insertions, 1 deletions

diff --git a/math/Makefile b/math/Makefile
index f3c8dfca38c..9e0d00da4ed 100644
--- a/math/Makefile
+++ b/math/Makefile
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.400 2018/08/21 09:30:13 wiz Exp $
+# $NetBSD: Makefile,v 1.401 2018/09/17 13:24:17 maya Exp $
 
 COMMENT=	Mathematics
 
@@ -15,6 +15,7 @@ SUBDIR+=	R-PHYLOGR
 SUBDIR+=	R-R2HTML
 SUBDIR+=	R-RArcInfo
 SUBDIR+=	R-RColorBrewer
+SUBDIR+=	R-RNetCDF
 SUBDIR+=	R-RPostgreSQL
 SUBDIR+=	R-RandomFields
 SUBDIR+=	R-Rcmdr
diff --git a/math/R-RNetCDF/DESCR b/math/R-RNetCDF/DESCR
new file mode 100644
index 00000000000..9d908491800
--- /dev/null
+++ b/math/R-RNetCDF/DESCR
@@ -0,0 +1,7 @@
+An R interface to the NetCDF file format designed by Unidata for
+efficient storage of array-oriented scientific data and descriptions.
+The R interface is closely based on the C API of the NetCDF library,
+and it includes calendar conversions from the Unidata UDUNITS library.
+The current implementation supports all operations on NetCDF datasets
+in classic and 64-bit offset file formats, and NetCDF4-classic format
+is supported for reading and modification of existing files.
diff --git a/math/R-RNetCDF/Makefile b/math/R-RNetCDF/Makefile
new file mode 100644
index 00000000000..e7e0cdfd4ac
--- /dev/null
+++ b/math/R-RNetCDF/Makefile
@@ -0,0 +1,19 @@
+# $NetBSD: Makefile,v 1.1 2018/09/17 13:24:18 maya Exp $
+#
+
+CATEGORIES=	math
+MASTER_SITES=	${MASTER_SITE_R_CRAN:=contrib/}
+
+MAINTAINER=	pkgsrc-users@NetBSD.org
+HOMEPAGE=	${R_HOMEPAGE_BASE}/ncdf/
+COMMENT=	High-level R interface to Unidata's netCDF data files
+LICENSE=	gnu-gpl-v2
+
+R_PKGNAME=	RNetCDF
+R_PKGVER=	1.9-1
+
+
+.include "../../math/R/Makefile.extension"
+.include "../../devel/netcdf/buildlink3.mk"
+.include "../../math/udunits/buildlink3.mk"
+.include "../../mk/bsd.pkg.mk"
diff --git a/math/R-RNetCDF/distinfo b/math/R-RNetCDF/distinfo
new file mode 100644
index 00000000000..3cde35de4f6
--- /dev/null
+++ b/math/R-RNetCDF/distinfo
@@ -0,0 +1,7 @@
+$NetBSD: distinfo,v 1.1 2018/09/17 13:24:18 maya Exp $
+
+SHA1 (R/RNetCDF_1.9-1.tar.gz) = 720b4146271bd8a5156f9d3810d2c9bd1eee76ef
+RMD160 (R/RNetCDF_1.9-1.tar.gz) = b473a5eb57df4d48b96eea8b4b347bda2f2ded52
+SHA512 (R/RNetCDF_1.9-1.tar.gz) = 3a1cd3b9b7996ffc40b14f4ac6bee78c5ea68cad8e4f68e0ba64ecfd6bb26e9e349cfacac8dac910dd5c57d6f4e8dbad6f47e48632b57a7a2d962381e6ff75f7
+Size (R/RNetCDF_1.9-1.tar.gz) = 98628 bytes
+SHA1 (patch-configure) = 62e98e78ae4338ce7bad04dbcb69fdb60cef5b8f
diff --git a/math/R-RNetCDF/patches/patch-configure b/math/R-RNetCDF/patches/patch-configure
new file mode 100644
index 00000000000..e93be96bd67
--- /dev/null
+++ b/math/R-RNetCDF/patches/patch-configure
@@ -0,0 +1,33 @@
+$NetBSD: patch-configure,v 1.1 2018/09/17 13:24:18 maya Exp $
+
+Fix the use of == in shell scripts.
+
+--- configure.orig	2016-11-06 16:18:40.084776697 +0000
++++ configure
+@@ -3275,7 +3275,7 @@ fi
+ done
+ 
+ 
+-if test "x$have_nc_config" == xyes; then :
++if test "x$have_nc_config" = xyes; then :
+ 
+     # Find libraries and cflags used to build netcdf:
+     { $as_echo "$as_me:${as_lineno-$LINENO}: checking netcdf linker flags" >&5
+@@ -3589,7 +3589,7 @@ fi
+ # Define variables UDUNITS_LIB, UDUNITS_DBFILE and UDUNITS_DBVAR,
+ # based on the version of udunits detected above.
+ # Also define preprocessor macro HAVE_LIBUDUNITS or HAVE_LIBUDUNITS2.
+-if test $udunits == 2; then :
++if test $udunits = 2; then :
+ 
+     UDUNITS_LIB=udunits2
+     UDUNITS_DBFILE=udunits2.xml
+@@ -3597,7 +3597,7 @@ if test $udunits == 2; then :
+     $as_echo "#define HAVE_LIBUDUNITS2 1" >>confdefs.h
+ 
+ 
+-elif test $udunits == 1; then :
++elif test $udunits = 1; then :
+ 
+     UDUNITS_LIB=udunits
+     UDUNITS_DBFILE=udunits.dat