Update to R 3.0.1

Changes: many new features and bug fixes.  See NEWS file for details.

10 files changed, 473 insertions, 292 deletions

diff --git a/math/R/Makefile b/math/R/Makefile
index a6a2e21fc0e..ca2fb535413 100644
--- a/math/R/Makefile
+++ b/math/R/Makefile
@@ -1,9 +1,8 @@
-# $NetBSD: Makefile,v 1.141 2013/07/15 02:02:25 ryoon Exp $
+# $NetBSD: Makefile,v 1.142 2013/08/13 19:53:30 markd Exp $
 
-DISTNAME=		R-2.15.1
-PKGREVISION=		7
+DISTNAME=		R-3.0.1
 CATEGORIES=		math
-MASTER_SITES=		${MASTER_SITE_R_CRAN:=base/R-2/}
+MASTER_SITES=		${MASTER_SITE_R_CRAN:=base/R-3/}
 
 MAINTAINER=		markd@NetBSD.org
 HOMEPAGE=		http://www.R-project.org/
diff --git a/math/R/PLIST b/math/R/PLIST
index bb27f2ff563..d6475f707a7 100644
--- a/math/R/PLIST
+++ b/math/R/PLIST
@@ -1,11 +1,9 @@
-@comment $NetBSD: PLIST,v 1.16 2013/04/06 03:16:50 markd Exp $
+@comment $NetBSD: PLIST,v 1.17 2013/08/13 19:53:30 markd Exp $
 bin/R
 bin/Rscript
 info/R-FAQ.info.gz
 info/R-admin.info.gz
 info/R-data.info.gz
-info/R-exts.info-1.gz
-info/R-exts.info-2.gz
 info/R-exts.info.gz
 info/R-intro.info.gz
 info/R-ints.info.gz
@@ -72,6 +70,7 @@ lib/R/doc/manual/R-ints.html
 lib/R/doc/manual/R-lang.html
 lib/R/etc/Makeconf
 lib/R/etc/Renviron
+lib/R/etc/javaconf
 lib/R/etc/ldpaths
 lib/R/etc/repositories
 lib/R/include/R.h
@@ -81,6 +80,7 @@ lib/R/include/R_ext/BLAS.h
 lib/R/include/R_ext/Boolean.h
 lib/R/include/R_ext/Callbacks.h
 lib/R/include/R_ext/Complex.h
+lib/R/include/R_ext/Connections.h
 lib/R/include/R_ext/Constants.h
 lib/R/include/R_ext/Error.h
 lib/R/include/R_ext/GetX11Image.h
@@ -95,7 +95,6 @@ lib/R/include/R_ext/Print.h
 lib/R/include/R_ext/PrtUtil.h
 lib/R/include/R_ext/QuartzDevice.h
 lib/R/include/R_ext/R-ftp-http.h
-lib/R/include/R_ext/RConverters.h
 lib/R/include/R_ext/RS.h
 lib/R/include/R_ext/RStartup.h
 lib/R/include/R_ext/Random.h
@@ -105,7 +104,6 @@ lib/R/include/R_ext/Utils.h
 lib/R/include/R_ext/Visibility.h
 lib/R/include/R_ext/eventloop.h
 lib/R/include/R_ext/libextern.h
-lib/R/include/R_ext/rlocale.h
 lib/R/include/R_ext/stats_package.h
 lib/R/include/R_ext/stats_stubs.h
 lib/R/include/Rconfig.h
@@ -120,7 +118,6 @@ lib/R/lib/libR.so
 lib/R/lib/libRlapack.so
 lib/R/library/KernSmooth/DESCRIPTION
 lib/R/library/KernSmooth/INDEX
-lib/R/library/KernSmooth/LICENCE
 lib/R/library/KernSmooth/Meta/Rd.rds
 lib/R/library/KernSmooth/Meta/hsearch.rds
 lib/R/library/KernSmooth/Meta/links.rds
@@ -140,6 +137,8 @@ lib/R/library/KernSmooth/html/R.css
 lib/R/library/KernSmooth/libs/KernSmooth.so
 lib/R/library/KernSmooth/po/de/LC_MESSAGES/R-KernSmooth.mo
 lib/R/library/KernSmooth/po/en@quot/LC_MESSAGES/R-KernSmooth.mo
+lib/R/library/KernSmooth/po/ko/LC_MESSAGES/R-KernSmooth.mo
+lib/R/library/KernSmooth/po/pl/LC_MESSAGES/R-KernSmooth.mo
 lib/R/library/MASS/CITATION
 lib/R/library/MASS/DESCRIPTION
 lib/R/library/MASS/INDEX
@@ -169,6 +168,8 @@ lib/R/library/MASS/libs/MASS.so
 lib/R/library/MASS/po/de/LC_MESSAGES/R-MASS.mo
 lib/R/library/MASS/po/en@quot/LC_MESSAGES/R-MASS.mo
 lib/R/library/MASS/po/fr/LC_MESSAGES/R-MASS.mo
+lib/R/library/MASS/po/ko/LC_MESSAGES/R-MASS.mo
+lib/R/library/MASS/po/pl/LC_MESSAGES/R-MASS.mo
 lib/R/library/MASS/scripts/ch01.R
 lib/R/library/MASS/scripts/ch02.R
 lib/R/library/MASS/scripts/ch03.R
@@ -216,13 +217,12 @@ lib/R/library/Matrix/doc/Intro2Matrix.pdf
 lib/R/library/Matrix/doc/Introduction.R
 lib/R/library/Matrix/doc/Introduction.Rnw
 lib/R/library/Matrix/doc/Introduction.pdf
-lib/R/library/Matrix/doc/Matrix.bib
-lib/R/library/Matrix/doc/UFsparse/AMD.txt
-lib/R/library/Matrix/doc/UFsparse/CHOLMOD.txt
-lib/R/library/Matrix/doc/UFsparse/COLAMD.txt
-lib/R/library/Matrix/doc/UFsparse/SPQR.txt
-lib/R/library/Matrix/doc/UFsparse/UFconfig.txt
-lib/R/library/Matrix/doc/UFsparse/UserGuides.txt
+lib/R/library/Matrix/doc/SuiteSparse/AMD.txt
+lib/R/library/Matrix/doc/SuiteSparse/CHOLMOD.txt
+lib/R/library/Matrix/doc/SuiteSparse/COLAMD.txt
+lib/R/library/Matrix/doc/SuiteSparse/SPQR.txt
+lib/R/library/Matrix/doc/SuiteSparse/SuiteSparse_config.txt
+lib/R/library/Matrix/doc/SuiteSparse/UserGuides.txt
 lib/R/library/Matrix/doc/index.html
 lib/R/library/Matrix/doc/sparseModels.R
 lib/R/library/Matrix/doc/sparseModels.Rnw
@@ -251,6 +251,8 @@ lib/R/library/Matrix/po/de/LC_MESSAGES/Matrix.mo
 lib/R/library/Matrix/po/de/LC_MESSAGES/R-Matrix.mo
 lib/R/library/Matrix/po/en@quot/LC_MESSAGES/Matrix.mo
 lib/R/library/Matrix/po/en@quot/LC_MESSAGES/R-Matrix.mo
+lib/R/library/Matrix/po/pl/LC_MESSAGES/Matrix.mo
+lib/R/library/Matrix/po/pl/LC_MESSAGES/R-Matrix.mo
 lib/R/library/Matrix/test-tools-1.R
 lib/R/library/Matrix/test-tools-Matrix.R
 lib/R/library/Matrix/test-tools.R
@@ -277,18 +279,6 @@ lib/R/library/base/help/base.rdx
 lib/R/library/base/help/paths.rds
 lib/R/library/base/html/00Index.html
 lib/R/library/base/html/R.css
-lib/R/library/base/po/da/LC_MESSAGES/R-base.mo
-lib/R/library/base/po/de/LC_MESSAGES/R-base.mo
-lib/R/library/base/po/en@quot/LC_MESSAGES/R-base.mo
-lib/R/library/base/po/fr/LC_MESSAGES/R-base.mo
-lib/R/library/base/po/it/LC_MESSAGES/R-base.mo
-lib/R/library/base/po/ja/LC_MESSAGES/R-base.mo
-lib/R/library/base/po/ko/LC_MESSAGES/R-base.mo
-lib/R/library/base/po/pl/LC_MESSAGES/R-base.mo
-lib/R/library/base/po/pt_BR/LC_MESSAGES/R-base.mo
-lib/R/library/base/po/ru/LC_MESSAGES/R-base.mo
-lib/R/library/base/po/tr/LC_MESSAGES/R-base.mo
-lib/R/library/base/po/zh_CN/LC_MESSAGES/R-base.mo
 lib/R/library/boot/CITATION
 lib/R/library/boot/DESCRIPTION
 lib/R/library/boot/INDEX
@@ -315,6 +305,8 @@ lib/R/library/boot/html/R.css
 lib/R/library/boot/po/de/LC_MESSAGES/R-boot.mo
 lib/R/library/boot/po/en@quot/LC_MESSAGES/R-boot.mo
 lib/R/library/boot/po/fr/LC_MESSAGES/R-boot.mo
+lib/R/library/boot/po/ko/LC_MESSAGES/R-boot.mo
+lib/R/library/boot/po/pl/LC_MESSAGES/R-boot.mo
 lib/R/library/boot/po/ru/LC_MESSAGES/R-boot.mo
 lib/R/library/class/CITATION
 lib/R/library/class/DESCRIPTION
@@ -341,6 +333,8 @@ lib/R/library/class/libs/class.so
 lib/R/library/class/po/de/LC_MESSAGES/R-class.mo
 lib/R/library/class/po/en@quot/LC_MESSAGES/R-class.mo
 lib/R/library/class/po/fr/LC_MESSAGES/R-class.mo
+lib/R/library/class/po/ko/LC_MESSAGES/R-class.mo
+lib/R/library/class/po/pl/LC_MESSAGES/R-class.mo
 lib/R/library/cluster/CITATION
 lib/R/library/cluster/DESCRIPTION
 lib/R/library/cluster/INDEX
@@ -367,6 +361,7 @@ lib/R/library/cluster/html/R.css
 lib/R/library/cluster/libs/cluster.so
 lib/R/library/cluster/po/de/LC_MESSAGES/R-cluster.mo
 lib/R/library/cluster/po/en@quot/LC_MESSAGES/R-cluster.mo
+lib/R/library/cluster/po/pl/LC_MESSAGES/R-cluster.mo
 lib/R/library/codetools/DESCRIPTION
 lib/R/library/codetools/INDEX
 lib/R/library/codetools/Meta/Rd.rds
@@ -403,15 +398,6 @@ lib/R/library/compiler/help/compiler.rdx
 lib/R/library/compiler/help/paths.rds
 lib/R/library/compiler/html/00Index.html
 lib/R/library/compiler/html/R.css
-lib/R/library/compiler/po/da/LC_MESSAGES/R-compiler.mo
-lib/R/library/compiler/po/de/LC_MESSAGES/R-compiler.mo
-lib/R/library/compiler/po/en@quot/LC_MESSAGES/R-compiler.mo
-lib/R/library/compiler/po/fr/LC_MESSAGES/R-compiler.mo
-lib/R/library/compiler/po/ja/LC_MESSAGES/R-compiler.mo
-lib/R/library/compiler/po/pl/LC_MESSAGES/R-compiler.mo
-lib/R/library/compiler/po/pt_BR/LC_MESSAGES/R-compiler.mo
-lib/R/library/compiler/po/ru/LC_MESSAGES/R-compiler.mo
-lib/R/library/compiler/po/zh_CN/LC_MESSAGES/R-compiler.mo
 lib/R/library/datasets/DESCRIPTION
 lib/R/library/datasets/INDEX
 lib/R/library/datasets/Meta/Rd.rds
@@ -432,9 +418,9 @@ lib/R/library/datasets/help/datasets.rdx
 lib/R/library/datasets/help/paths.rds
 lib/R/library/datasets/html/00Index.html
 lib/R/library/datasets/html/R.css
+lib/R/library/foreign/COPYRIGHTS
 lib/R/library/foreign/DESCRIPTION
 lib/R/library/foreign/INDEX
-lib/R/library/foreign/LICENCE
 lib/R/library/foreign/Meta/Rd.rds
 lib/R/library/foreign/Meta/hsearch.rds
 lib/R/library/foreign/Meta/links.rds
@@ -461,9 +447,12 @@ lib/R/library/foreign/po/en@quot/LC_MESSAGES/R-foreign.mo
 lib/R/library/foreign/po/en@quot/LC_MESSAGES/foreign.mo
 lib/R/library/foreign/po/fr/LC_MESSAGES/R-foreign.mo
 lib/R/library/foreign/po/fr/LC_MESSAGES/foreign.mo
+lib/R/library/foreign/po/pl/LC_MESSAGES/R-foreign.mo
+lib/R/library/foreign/po/pl/LC_MESSAGES/foreign.mo
 lib/R/library/grDevices/DESCRIPTION
 lib/R/library/grDevices/INDEX
 lib/R/library/grDevices/Meta/Rd.rds
+lib/R/library/grDevices/Meta/demo.rds
 lib/R/library/grDevices/Meta/hsearch.rds
 lib/R/library/grDevices/Meta/links.rds
 lib/R/library/grDevices/Meta/nsInfo.rds
@@ -561,6 +550,8 @@ lib/R/library/grDevices/afm/tib_____.afm.gz
 lib/R/library/grDevices/afm/tibi____.afm.gz
 lib/R/library/grDevices/afm/tii_____.afm.gz
 lib/R/library/grDevices/afm/tir_____.afm.gz
+lib/R/library/grDevices/demo/colors.R
+lib/R/library/grDevices/demo/hclColors.R
 lib/R/library/grDevices/enc/AdobeStd.enc
 lib/R/library/grDevices/enc/AdobeSym.enc
 lib/R/library/grDevices/enc/CP1250.enc
@@ -590,30 +581,6 @@ lib/R/library/grDevices/icc/srgb
 lib/R/library/grDevices/icc/srgb.flate
 lib/R/library/grDevices/libs/cairo.so
 lib/R/library/grDevices/libs/grDevices.so
-lib/R/library/grDevices/po/da/LC_MESSAGES/R-grDevices.mo
-lib/R/library/grDevices/po/da/LC_MESSAGES/grDevices.mo
-lib/R/library/grDevices/po/de/LC_MESSAGES/R-grDevices.mo
-lib/R/library/grDevices/po/de/LC_MESSAGES/grDevices.mo
-lib/R/library/grDevices/po/en@quot/LC_MESSAGES/R-grDevices.mo
-lib/R/library/grDevices/po/en@quot/LC_MESSAGES/grDevices.mo
-lib/R/library/grDevices/po/en_GB/LC_MESSAGES/R-grDevices.mo
-lib/R/library/grDevices/po/en_GB/LC_MESSAGES/grDevices.mo
-lib/R/library/grDevices/po/fr/LC_MESSAGES/R-grDevices.mo
-lib/R/library/grDevices/po/fr/LC_MESSAGES/grDevices.mo
-lib/R/library/grDevices/po/it/LC_MESSAGES/R-grDevices.mo
-lib/R/library/grDevices/po/it/LC_MESSAGES/grDevices.mo
-lib/R/library/grDevices/po/ja/LC_MESSAGES/R-grDevices.mo
-lib/R/library/grDevices/po/ja/LC_MESSAGES/grDevices.mo
-lib/R/library/grDevices/po/ko/LC_MESSAGES/R-grDevices.mo
-lib/R/library/grDevices/po/ko/LC_MESSAGES/grDevices.mo
-lib/R/library/grDevices/po/pl/LC_MESSAGES/R-grDevices.mo
-lib/R/library/grDevices/po/pl/LC_MESSAGES/grDevices.mo
-lib/R/library/grDevices/po/pt_BR/LC_MESSAGES/R-grDevices.mo
-lib/R/library/grDevices/po/pt_BR/LC_MESSAGES/grDevices.mo
-lib/R/library/grDevices/po/ru/LC_MESSAGES/R-grDevices.mo
-lib/R/library/grDevices/po/ru/LC_MESSAGES/grDevices.mo
-lib/R/library/grDevices/po/zh_CN/LC_MESSAGES/R-grDevices.mo
-lib/R/library/grDevices/po/zh_CN/LC_MESSAGES/grDevices.mo
 lib/R/library/graphics/DESCRIPTION
 lib/R/library/graphics/INDEX
 lib/R/library/graphics/Meta/Rd.rds
@@ -646,17 +613,7 @@ lib/R/library/graphics/help/graphics.rdx
 lib/R/library/graphics/help/paths.rds
 lib/R/library/graphics/html/00Index.html
 lib/R/library/graphics/html/R.css
-lib/R/library/graphics/po/da/LC_MESSAGES/R-graphics.mo
-lib/R/library/graphics/po/de/LC_MESSAGES/R-graphics.mo
-lib/R/library/graphics/po/en@quot/LC_MESSAGES/R-graphics.mo
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-lib/R/library/graphics/po/ja/LC_MESSAGES/R-graphics.mo
-lib/R/library/graphics/po/ko/LC_MESSAGES/R-graphics.mo
-lib/R/library/graphics/po/pl/LC_MESSAGES/R-graphics.mo
-lib/R/library/graphics/po/pt_BR/LC_MESSAGES/R-graphics.mo
-lib/R/library/graphics/po/ru/LC_MESSAGES/R-graphics.mo
-lib/R/library/graphics/po/zh_CN/LC_MESSAGES/R-graphics.mo
+lib/R/library/graphics/libs/graphics.so
 lib/R/library/grid/DESCRIPTION
 lib/R/library/grid/INDEX
 lib/R/library/grid/Meta/Rd.rds
@@ -664,23 +621,51 @@ lib/R/library/grid/Meta/hsearch.rds
 lib/R/library/grid/Meta/links.rds
 lib/R/library/grid/Meta/nsInfo.rds
 lib/R/library/grid/Meta/package.rds
+lib/R/library/grid/Meta/vignette.rds
 lib/R/library/grid/NAMESPACE
 lib/R/library/grid/R/grid
 lib/R/library/grid/R/grid.rdb
 lib/R/library/grid/R/grid.rdx
 lib/R/library/grid/doc/changes.txt
+lib/R/library/grid/doc/displaylist.R
+lib/R/library/grid/doc/displaylist.Rnw
 lib/R/library/grid/doc/displaylist.pdf
+lib/R/library/grid/doc/frame.R
+lib/R/library/grid/doc/frame.Rnw
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+lib/R/library/grid/doc/grid.R
+lib/R/library/grid/doc/grid.Rnw
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+lib/R/library/grid/doc/grobs.R
+lib/R/library/grid/doc/grobs.Rnw
 lib/R/library/grid/doc/grobs.pdf
+lib/R/library/grid/doc/index.html
+lib/R/library/grid/doc/interactive.R
+lib/R/library/grid/doc/interactive.Rnw
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+lib/R/library/grid/doc/locndimn.R
+lib/R/library/grid/doc/locndimn.Rnw
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+lib/R/library/grid/doc/moveline.R
+lib/R/library/grid/doc/moveline.Rnw
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+lib/R/library/grid/doc/nonfinite.R
+lib/R/library/grid/doc/nonfinite.Rnw
 lib/R/library/grid/doc/nonfinite.pdf
+lib/R/library/grid/doc/plotexample.R
+lib/R/library/grid/doc/plotexample.Rnw
 lib/R/library/grid/doc/plotexample.pdf
+lib/R/library/grid/doc/rotated.R
+lib/R/library/grid/doc/rotated.Rnw
 lib/R/library/grid/doc/rotated.pdf
+lib/R/library/grid/doc/saveload.R
+lib/R/library/grid/doc/saveload.Rnw
 lib/R/library/grid/doc/saveload.pdf
+lib/R/library/grid/doc/sharing.R
+lib/R/library/grid/doc/sharing.Rnw
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+lib/R/library/grid/doc/viewports.R
+lib/R/library/grid/doc/viewports.Rnw
 lib/R/library/grid/doc/viewports.pdf
 lib/R/library/grid/help/AnIndex
 lib/R/library/grid/help/aliases.rds
@@ -690,31 +675,9 @@ lib/R/library/grid/help/paths.rds
 lib/R/library/grid/html/00Index.html
 lib/R/library/grid/html/R.css
 lib/R/library/grid/libs/grid.so
-lib/R/library/grid/po/da/LC_MESSAGES/R-grid.mo
-lib/R/library/grid/po/da/LC_MESSAGES/grid.mo
-lib/R/library/grid/po/de/LC_MESSAGES/R-grid.mo
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-lib/R/library/grid/po/it/LC_MESSAGES/grid.mo
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 lib/R/library/lattice/CITATION
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-lib/R/library/lattice/LICENSE
 lib/R/library/lattice/Meta/Rd.rds
 lib/R/library/lattice/Meta/data.rds
 lib/R/library/lattice/Meta/demo.rds
@@ -764,25 +727,6 @@ lib/R/library/methods/help/paths.rds
 lib/R/library/methods/html/00Index.html
 lib/R/library/methods/html/R.css
 lib/R/library/methods/libs/methods.so
-lib/R/library/methods/po/da/LC_MESSAGES/R-methods.mo
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-lib/R/library/methods/po/zh_CN/LC_MESSAGES/methods.mo
 lib/R/library/mgcv/CITATION
 lib/R/library/mgcv/DESCRIPTION
 lib/R/library/mgcv/INDEX
@@ -840,6 +784,8 @@ lib/R/library/nlme/po/en@quot/LC_MESSAGES/R-nlme.mo
 lib/R/library/nlme/po/en@quot/LC_MESSAGES/nlme.mo
 lib/R/library/nlme/po/fr/LC_MESSAGES/R-nlme.mo
 lib/R/library/nlme/po/fr/LC_MESSAGES/nlme.mo
+lib/R/library/nlme/po/pl/LC_MESSAGES/R-nlme.mo
+lib/R/library/nlme/po/pl/LC_MESSAGES/nlme.mo
 lib/R/library/nlme/scripts/ch01.R
 lib/R/library/nlme/scripts/ch02.R
 lib/R/library/nlme/scripts/ch03.R
@@ -873,6 +819,8 @@ lib/R/library/nnet/libs/nnet.so
 lib/R/library/nnet/po/de/LC_MESSAGES/R-nnet.mo
 lib/R/library/nnet/po/en@quot/LC_MESSAGES/R-nnet.mo
 lib/R/library/nnet/po/fr/LC_MESSAGES/R-nnet.mo
+lib/R/library/nnet/po/ko/LC_MESSAGES/R-nnet.mo
+lib/R/library/nnet/po/pl/LC_MESSAGES/R-nnet.mo
 lib/R/library/parallel/DESCRIPTION
 lib/R/library/parallel/INDEX
 lib/R/library/parallel/Meta/Rd.rds
@@ -880,10 +828,14 @@ lib/R/library/parallel/Meta/hsearch.rds
 lib/R/library/parallel/Meta/links.rds
 lib/R/library/parallel/Meta/nsInfo.rds
 lib/R/library/parallel/Meta/package.rds
+lib/R/library/parallel/Meta/vignette.rds
 lib/R/library/parallel/NAMESPACE
 lib/R/library/parallel/R/parallel
 lib/R/library/parallel/R/parallel.rdb
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+lib/R/library/translations/ko/LC_MESSAGES/R-splines.mo
+lib/R/library/translations/ko/LC_MESSAGES/R-stats.mo
+lib/R/library/translations/ko/LC_MESSAGES/R-stats4.mo
+lib/R/library/translations/ko/LC_MESSAGES/R-tcltk.mo
+lib/R/library/translations/ko/LC_MESSAGES/R-tools.mo
+lib/R/library/translations/ko/LC_MESSAGES/R-utils.mo
+lib/R/library/translations/ko/LC_MESSAGES/R.mo
+lib/R/library/translations/ko/LC_MESSAGES/RGui.mo
+lib/R/library/translations/ko/LC_MESSAGES/grDevices.mo
+lib/R/library/translations/ko/LC_MESSAGES/graphics.mo
+lib/R/library/translations/ko/LC_MESSAGES/grid.mo
+lib/R/library/translations/ko/LC_MESSAGES/methods.mo
+lib/R/library/translations/ko/LC_MESSAGES/parallel.mo
+lib/R/library/translations/ko/LC_MESSAGES/splines.mo
+lib/R/library/translations/ko/LC_MESSAGES/stats.mo
+lib/R/library/translations/ko/LC_MESSAGES/tcltk.mo
+lib/R/library/translations/ko/LC_MESSAGES/tools.mo
+lib/R/library/translations/ko/LC_MESSAGES/utils.mo
+lib/R/library/translations/nn/LC_MESSAGES/R-base.mo
+lib/R/library/translations/nn/LC_MESSAGES/R.mo
+lib/R/library/translations/nn/LC_MESSAGES/RGui.mo
+lib/R/library/translations/nn/LC_MESSAGES/graphics.mo
+lib/R/library/translations/pl/LC_MESSAGES/R-base.mo
+lib/R/library/translations/pl/LC_MESSAGES/R-compiler.mo
+lib/R/library/translations/pl/LC_MESSAGES/R-grDevices.mo
+lib/R/library/translations/pl/LC_MESSAGES/R-graphics.mo
+lib/R/library/translations/pl/LC_MESSAGES/R-grid.mo
+lib/R/library/translations/pl/LC_MESSAGES/R-methods.mo
+lib/R/library/translations/pl/LC_MESSAGES/R-parallel.mo
+lib/R/library/translations/pl/LC_MESSAGES/R-splines.mo
+lib/R/library/translations/pl/LC_MESSAGES/R-stats.mo
+lib/R/library/translations/pl/LC_MESSAGES/R-stats4.mo
+lib/R/library/translations/pl/LC_MESSAGES/R-tcltk.mo
+lib/R/library/translations/pl/LC_MESSAGES/R-tools.mo
+lib/R/library/translations/pl/LC_MESSAGES/R-utils.mo
+lib/R/library/translations/pl/LC_MESSAGES/R.mo
+lib/R/library/translations/pl/LC_MESSAGES/RGui.mo
+lib/R/library/translations/pl/LC_MESSAGES/grDevices.mo
+lib/R/library/translations/pl/LC_MESSAGES/graphics.mo
+lib/R/library/translations/pl/LC_MESSAGES/grid.mo
+lib/R/library/translations/pl/LC_MESSAGES/methods.mo
+lib/R/library/translations/pl/LC_MESSAGES/parallel.mo
+lib/R/library/translations/pl/LC_MESSAGES/splines.mo
+lib/R/library/translations/pl/LC_MESSAGES/stats.mo
+lib/R/library/translations/pl/LC_MESSAGES/tcltk.mo
+lib/R/library/translations/pl/LC_MESSAGES/tools.mo
+lib/R/library/translations/pl/LC_MESSAGES/utils.mo
+lib/R/library/translations/pt_BR/LC_MESSAGES/R-base.mo
+lib/R/library/translations/pt_BR/LC_MESSAGES/R-compiler.mo
+lib/R/library/translations/pt_BR/LC_MESSAGES/R-grDevices.mo
+lib/R/library/translations/pt_BR/LC_MESSAGES/R-graphics.mo
+lib/R/library/translations/pt_BR/LC_MESSAGES/R-grid.mo
+lib/R/library/translations/pt_BR/LC_MESSAGES/R-methods.mo
+lib/R/library/translations/pt_BR/LC_MESSAGES/R-splines.mo
+lib/R/library/translations/pt_BR/LC_MESSAGES/R-stats.mo
+lib/R/library/translations/pt_BR/LC_MESSAGES/R-stats4.mo
+lib/R/library/translations/pt_BR/LC_MESSAGES/R-tcltk.mo
+lib/R/library/translations/pt_BR/LC_MESSAGES/R-tools.mo
+lib/R/library/translations/pt_BR/LC_MESSAGES/R-utils.mo
+lib/R/library/translations/pt_BR/LC_MESSAGES/R.mo
+lib/R/library/translations/pt_BR/LC_MESSAGES/RGui.mo
+lib/R/library/translations/pt_BR/LC_MESSAGES/grDevices.mo
+lib/R/library/translations/pt_BR/LC_MESSAGES/graphics.mo
+lib/R/library/translations/pt_BR/LC_MESSAGES/grid.mo
+lib/R/library/translations/pt_BR/LC_MESSAGES/methods.mo
+lib/R/library/translations/pt_BR/LC_MESSAGES/splines.mo
+lib/R/library/translations/pt_BR/LC_MESSAGES/stats.mo
+lib/R/library/translations/pt_BR/LC_MESSAGES/tcltk.mo
+lib/R/library/translations/pt_BR/LC_MESSAGES/tools.mo
+lib/R/library/translations/ru/LC_MESSAGES/R-base.mo
+lib/R/library/translations/ru/LC_MESSAGES/R-compiler.mo
+lib/R/library/translations/ru/LC_MESSAGES/R-grDevices.mo
+lib/R/library/translations/ru/LC_MESSAGES/R-graphics.mo
+lib/R/library/translations/ru/LC_MESSAGES/R-grid.mo
+lib/R/library/translations/ru/LC_MESSAGES/R-methods.mo
+lib/R/library/translations/ru/LC_MESSAGES/R-parallel.mo
+lib/R/library/translations/ru/LC_MESSAGES/R-splines.mo
+lib/R/library/translations/ru/LC_MESSAGES/R-stats.mo
+lib/R/library/translations/ru/LC_MESSAGES/R-stats4.mo
+lib/R/library/translations/ru/LC_MESSAGES/R-tcltk.mo
+lib/R/library/translations/ru/LC_MESSAGES/R-tools.mo
+lib/R/library/translations/ru/LC_MESSAGES/R-utils.mo
+lib/R/library/translations/ru/LC_MESSAGES/R.mo
+lib/R/library/translations/ru/LC_MESSAGES/RGui.mo
+lib/R/library/translations/ru/LC_MESSAGES/grDevices.mo
+lib/R/library/translations/ru/LC_MESSAGES/graphics.mo
+lib/R/library/translations/ru/LC_MESSAGES/grid.mo
+lib/R/library/translations/ru/LC_MESSAGES/methods.mo
+lib/R/library/translations/ru/LC_MESSAGES/parallel.mo
+lib/R/library/translations/ru/LC_MESSAGES/splines.mo
+lib/R/library/translations/ru/LC_MESSAGES/stats.mo
+lib/R/library/translations/ru/LC_MESSAGES/tcltk.mo
+lib/R/library/translations/ru/LC_MESSAGES/tools.mo
+lib/R/library/translations/tr/LC_MESSAGES/R-base.mo
+lib/R/library/translations/tr/LC_MESSAGES/R-stats.mo
+lib/R/library/translations/tr/LC_MESSAGES/R-stats4.mo
+lib/R/library/translations/tr/LC_MESSAGES/R-tools.mo
+lib/R/library/translations/tr/LC_MESSAGES/R-utils.mo
+lib/R/library/translations/tr/LC_MESSAGES/R.mo
+lib/R/library/translations/tr/LC_MESSAGES/RGui.mo
+lib/R/library/translations/tr/LC_MESSAGES/graphics.mo
+lib/R/library/translations/zh_CN/LC_MESSAGES/R-base.mo
+lib/R/library/translations/zh_CN/LC_MESSAGES/R-compiler.mo
+lib/R/library/translations/zh_CN/LC_MESSAGES/R-grDevices.mo
+lib/R/library/translations/zh_CN/LC_MESSAGES/R-graphics.mo
+lib/R/library/translations/zh_CN/LC_MESSAGES/R-grid.mo
+lib/R/library/translations/zh_CN/LC_MESSAGES/R-methods.mo
+lib/R/library/translations/zh_CN/LC_MESSAGES/R-parallel.mo
+lib/R/library/translations/zh_CN/LC_MESSAGES/R-splines.mo
+lib/R/library/translations/zh_CN/LC_MESSAGES/R-stats.mo
+lib/R/library/translations/zh_CN/LC_MESSAGES/R-stats4.mo
+lib/R/library/translations/zh_CN/LC_MESSAGES/R-tcltk.mo
+lib/R/library/translations/zh_CN/LC_MESSAGES/R-tools.mo
+lib/R/library/translations/zh_CN/LC_MESSAGES/R-utils.mo
+lib/R/library/translations/zh_CN/LC_MESSAGES/R.mo
+lib/R/library/translations/zh_CN/LC_MESSAGES/RGui.mo
+lib/R/library/translations/zh_CN/LC_MESSAGES/grDevices.mo
+lib/R/library/translations/zh_CN/LC_MESSAGES/graphics.mo
+lib/R/library/translations/zh_CN/LC_MESSAGES/grid.mo
+lib/R/library/translations/zh_CN/LC_MESSAGES/methods.mo
+lib/R/library/translations/zh_CN/LC_MESSAGES/parallel.mo
+lib/R/library/translations/zh_CN/LC_MESSAGES/splines.mo
+lib/R/library/translations/zh_CN/LC_MESSAGES/stats.mo
+lib/R/library/translations/zh_CN/LC_MESSAGES/tcltk.mo
+lib/R/library/translations/zh_CN/LC_MESSAGES/tools.mo
+lib/R/library/translations/zh_TW/LC_MESSAGES/R.mo
+lib/R/library/translations/zh_TW/LC_MESSAGES/RGui.mo
+lib/R/library/translations/zh_TW/LC_MESSAGES/graphics.mo
 lib/R/library/utils/DESCRIPTION
 lib/R/library/utils/INDEX
 lib/R/library/utils/Meta/Rd.rds
@@ -1242,13 +1375,17 @@ lib/R/library/utils/Meta/hsearch.rds
 lib/R/library/utils/Meta/links.rds
 lib/R/library/utils/Meta/nsInfo.rds
 lib/R/library/utils/Meta/package.rds
+lib/R/library/utils/Meta/vignette.rds
 lib/R/library/utils/NAMESPACE
 lib/R/library/utils/R/utils
 lib/R/library/utils/R/utils.rdb
 lib/R/library/utils/R/utils.rdx
 lib/R/library/utils/Sweave/Sweave-test-1.Rnw
 lib/R/library/utils/Sweave/example-1.Rnw
+lib/R/library/utils/doc/Sweave.R
+lib/R/library/utils/doc/Sweave.Rnw
 lib/R/library/utils/doc/Sweave.pdf
+lib/R/library/utils/doc/index.html
 lib/R/library/utils/help/AnIndex
 lib/R/library/utils/help/aliases.rds
 lib/R/library/utils/help/paths.rds
@@ -1257,20 +1394,11 @@ lib/R/library/utils/help/utils.rdx
 lib/R/library/utils/html/00Index.html
 lib/R/library/utils/html/R.css
 lib/R/library/utils/iconvlist
+lib/R/library/utils/libs/utils.so
 lib/R/library/utils/misc/exDIF.csv
 lib/R/library/utils/misc/exDIF.dif
-lib/R/library/utils/po/da/LC_MESSAGES/R-utils.mo
-lib/R/library/utils/po/de/LC_MESSAGES/R-utils.mo
-lib/R/library/utils/po/en@quot/LC_MESSAGES/R-utils.mo
-lib/R/library/utils/po/fr/LC_MESSAGES/R-utils.mo
-lib/R/library/utils/po/ja/LC_MESSAGES/R-utils.mo
-lib/R/library/utils/po/ko/LC_MESSAGES/R-utils.mo
-lib/R/library/utils/po/pl/LC_MESSAGES/R-utils.mo
-lib/R/library/utils/po/pt_BR/LC_MESSAGES/R-utils.mo
-lib/R/library/utils/po/ru/LC_MESSAGES/R-utils.mo
-lib/R/library/utils/po/tr/LC_MESSAGES/R-utils.mo
-lib/R/library/utils/po/zh_CN/LC_MESSAGES/R-utils.mo
 lib/R/modules/R_X11.so
+lib/R/modules/R_de.so
 lib/R/modules/internet.so
 lib/R/modules/lapack.so
 lib/R/modules/vfonts.so
@@ -1279,36 +1407,22 @@ lib/R/share/R/examples-footer.R
 lib/R/share/R/examples-header.R
 lib/R/share/R/nspackloader.R
 lib/R/share/R/tests-startup.R
+lib/R/share/dictionaries/en_stats.rds
 lib/R/share/encodings/Adobe-glyphlist
 lib/R/share/encodings/character-sets
 lib/R/share/java/README
 lib/R/share/java/getsp.class
 lib/R/share/licenses/AGPL-3
-lib/R/share/licenses/Artistic-1.0
 lib/R/share/licenses/Artistic-2.0
+lib/R/share/licenses/BSD_2_clause
+lib/R/share/licenses/BSD_3_clause
 lib/R/share/licenses/GPL-2
 lib/R/share/licenses/GPL-3
 lib/R/share/licenses/LGPL-2
 lib/R/share/licenses/LGPL-2.1
 lib/R/share/licenses/LGPL-3
+lib/R/share/licenses/MIT
 lib/R/share/licenses/license.db
-lib/R/share/locale/da/LC_MESSAGES/R.mo
-lib/R/share/locale/de/LC_MESSAGES/R.mo
-lib/R/share/locale/en/LC_MESSAGES/R.mo
-lib/R/share/locale/en@quot/LC_MESSAGES/R.mo
-lib/R/share/locale/en_GB/LC_MESSAGES/R.mo
-lib/R/share/locale/es/LC_MESSAGES/R.mo
-lib/R/share/locale/fr/LC_MESSAGES/R.mo
-lib/R/share/locale/it/LC_MESSAGES/R.mo
-lib/R/share/locale/ja/LC_MESSAGES/R.mo
-lib/R/share/locale/ko/LC_MESSAGES/R.mo
-lib/R/share/locale/nn/LC_MESSAGES/R.mo
-lib/R/share/locale/pl/LC_MESSAGES/R.mo
-lib/R/share/locale/pt_BR/LC_MESSAGES/R.mo
-lib/R/share/locale/ru/LC_MESSAGES/R.mo
-lib/R/share/locale/tr/LC_MESSAGES/R.mo
-lib/R/share/locale/zh_CN/LC_MESSAGES/R.mo
-lib/R/share/locale/zh_TW/LC_MESSAGES/R.mo
 lib/R/share/make/basepkg.mk
 lib/R/share/make/check.mk
 lib/R/share/make/clean.mk
@@ -1333,4 +1447,3 @@ lib/R/share/texmf/tex/latex/upquote.sty
 lib/pkgconfig/libR.pc
 man/man1/R.1
 man/man1/Rscript.1
-@pkgdir lib/R/library/compiler/po/compiler-zh_CN/LC_MESSAGES
diff --git a/math/R/distinfo b/math/R/distinfo
index 7f873f0824c..f677f176807 100644
--- a/math/R/distinfo
+++ b/math/R/distinfo
@@ -1,8 +1,12 @@
-$NetBSD: distinfo,v 1.51 2013/05/05 14:57:27 joerg Exp $
+$NetBSD: distinfo,v 1.52 2013/08/13 19:53:30 markd Exp $
 
-SHA1 (R-2.15.1.tar.gz) = f0e6912be6dfc0d1fdc4be66048304d8befe8424
-RMD160 (R-2.15.1.tar.gz) = 84a010906424f3e84b84a71236424a8f2bf1df08
-Size (R-2.15.1.tar.gz) = 24592493 bytes
-SHA1 (patch-ac) = 527234c663ea7f2fe0d6e303cf692aad0276bdbe
-SHA1 (patch-ad) = 9268c33c999ed39f9e8d0769486706bb920c8253
-SHA1 (patch-src_main_format.c) = 96290cd5f2e509a25ab71cd32854b20a43028cf6
+SHA1 (R-3.0.1.tar.gz) = 5cc65476837926fdf04105954ea94efa53ac85ce
+RMD160 (R-3.0.1.tar.gz) = 09910626891c2962b5c05d204b14d59444da0c3b
+Size (R-3.0.1.tar.gz) = 25508280 bytes
+SHA1 (patch-ac) = 25e54a7fc8934d2997ea2eff8836784b45ad2a45
+SHA1 (patch-ad) = 21c2f74ceb41afa72b0b268ba4b1dcb57f01e106
+SHA1 (patch-src_library_stats_src_cov.c) = 23e452472506483ffc33a9c6629274b121cfd161
+SHA1 (patch-src_main_format.c) = f03012b8fbab34ead3f35143fe782ab7c7b29768
+SHA1 (patch-src_nmath_dnbeta.c) = f14c188a4b74a38cec9a62f5eb2ba1ab72ad52d3
+SHA1 (patch-src_nmath_pnbeta.c) = 4a23cb223408d2bb73c6dc42d50659f3589be3ec
+SHA1 (patch-src_nmath_pnchisq.c) = fdf82ef6967b12eb9f44e246bb8660c9a2b55fd3
diff --git a/math/R/patches/patch-ac b/math/R/patches/patch-ac
index 17f23bab645..2bdc9a630a8 100644
--- a/math/R/patches/patch-ac
+++ b/math/R/patches/patch-ac
@@ -1,8 +1,8 @@
-$NetBSD: patch-ac,v 1.29 2013/05/05 14:57:27 joerg Exp $
+$NetBSD: patch-ac,v 1.30 2013/08/13 19:53:30 markd Exp $
 
---- configure.orig	2012-06-14 22:05:51.000000000 +0000
+--- configure.orig	2013-05-08 22:06:02.000000000 +0000
 +++ configure
-@@ -3976,7 +3976,7 @@ fi
+@@ -3967,7 +3967,7 @@ fi
  
  
  if test "${want_R_shlib}" = yes; then
@@ -11,7 +11,7 @@ $NetBSD: patch-ac,v 1.29 2013/05/05 14:57:27 joerg Exp $
  else
    LIBR=
  fi
-@@ -4040,7 +4040,7 @@ fi
+@@ -4031,7 +4031,7 @@ fi
  if test "x${want_lto}" != xno; then
    LTO=-flto
  fi
@@ -20,7 +20,7 @@ $NetBSD: patch-ac,v 1.29 2013/05/05 14:57:27 joerg Exp $
    LTOALL=-flto
  fi
  
-@@ -22963,6 +22963,11 @@ fi
+@@ -23015,6 +23015,11 @@ fi
  	  done
  	  ;;
  	-[lLR]*)
@@ -32,7 +32,7 @@ $NetBSD: patch-ac,v 1.29 2013/05/05 14:57:27 joerg Exp $
  	    ac_exists=false
    for ac_i in $ac_cv_f77_libs; do
      if test x"$ac_arg" = x"$ac_i"; then
-@@ -23928,6 +23933,9 @@ cat > conftest.c <<EOF
+@@ -23980,6 +23985,9 @@ cat > conftest.c <<EOF
  
  extern void F77_SYMBOL(cftest)(int *a, int *b, double *x, double *y);
  
@@ -42,7 +42,7 @@ $NetBSD: patch-ac,v 1.29 2013/05/05 14:57:27 joerg Exp $
  int main () {
    int a[3] = {17, 237, 2000000000}, b[2], res = 0;
    double x[3] = {3.14159265, 123.456789, 2.3e34}, z[3];
-@@ -24023,6 +24031,9 @@ typedef struct {
+@@ -24075,6 +24083,9 @@ typedef struct {
  
  extern void F77_SYMBOL(cftest)(Rcomplex *x);
  
@@ -52,7 +52,7 @@ $NetBSD: patch-ac,v 1.29 2013/05/05 14:57:27 joerg Exp $
  int main () {
      Rcomplex z[3];
  
-@@ -26224,12 +26235,12 @@ $as_echo "$as_me: WARNING: Use of flat n
+@@ -26279,12 +26290,12 @@ $as_echo "$as_me: WARNING: Use of flat n
        SHLIB_LIBADD="-lcc_dynamic"
      fi
      ;;
@@ -68,7 +68,7 @@ $NetBSD: patch-ac,v 1.29 2013/05/05 14:57:27 joerg Exp $
      ;;
    hpux*)
      SHLIB_EXT=".sl"
-@@ -26312,8 +26323,15 @@ $as_echo "$as_me: WARNING: Use of flat n
+@@ -26367,8 +26378,15 @@ $as_echo "$as_me: WARNING: Use of flat n
      fcpicflags=
      ;;
    netbsd*)
@@ -85,7 +85,7 @@ $NetBSD: patch-ac,v 1.29 2013/05/05 14:57:27 joerg Exp $
        shlib_ldflags="-shared"
      else
        shlib_ldflags="-Bshareable"
-@@ -26335,22 +26353,22 @@ $as_echo "$as_me: WARNING: Use of flat n
+@@ -26390,22 +26408,22 @@ $as_echo "$as_me: WARNING: Use of flat n
    solaris*)
  ## SPARC has only an 8k global object table, 1024 entries on 64-bit,
  ## so need PIC not pic.  They are the same on other Solaris platforms.
@@ -112,7 +112,7 @@ $NetBSD: patch-ac,v 1.29 2013/05/05 14:57:27 joerg Exp $
        cpicflags="-KPIC"
        if test "`basename ${CXX}`" = "CC" ; then
          ## Forte version 7 needs -lCstd: Forte 6 does not.
-@@ -26407,7 +26425,7 @@ fi
+@@ -26466,7 +26484,7 @@ fi
  : ${CPICFLAGS="${cpicflags}"}
  if test -z "${CPICFLAGS}"; then
    case "${host_os}" in
@@ -121,9 +121,9 @@ $NetBSD: patch-ac,v 1.29 2013/05/05 14:57:27 joerg Exp $
        ;;
      *)
        { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: I could not determine CPICFLAGS." >&5
-@@ -26916,6 +26934,14 @@ _ACEOF
+@@ -26984,6 +27002,14 @@ _ACEOF
  ## Cygwin has rintl but not nearbyintl
- for ac_func in expm1 hypot log1p log2 log10 nearbyint nearbyintl powl rint rintl
+ for ac_func in expm1 hypot log1p log1pl log2 log10 nearbyint nearbyintl powl rint rintl
  do
 +case $ac_func in
 +expm1|log1p|log2|log10|nearbyint|nearbyintl|rint|rintl)
@@ -136,7 +136,7 @@ $NetBSD: patch-ac,v 1.29 2013/05/05 14:57:27 joerg Exp $
  as_ac_Symbol=`$as_echo "ac_cv_have_decl_$ac_func" | $as_tr_sh`
  { $as_echo "$as_me:${as_lineno-$LINENO}: checking whether $ac_func exists and is declared" >&5
  $as_echo_n "checking whether $ac_func exists and is declared... " >&6; }
-@@ -26925,24 +26951,12 @@ else
+@@ -26993,24 +27019,12 @@ else
    cat confdefs.h - <<_ACEOF >conftest.$ac_ext
  /* end confdefs.h.  */
  #include <math.h>
@@ -163,7 +163,7 @@ $NetBSD: patch-ac,v 1.29 2013/05/05 14:57:27 joerg Exp $
  }
  _ACEOF
  if ac_fn_c_try_link "$LINENO"; then :
-@@ -29539,6 +29553,15 @@ cat > conftest.c <<EOF
+@@ -29657,6 +29671,15 @@ cat > conftest.c <<EOF
  #endif
  extern void F77_SYMBOL(test1)(int *iflag);
  
@@ -179,7 +179,7 @@ $NetBSD: patch-ac,v 1.29 2013/05/05 14:57:27 joerg Exp $
  int main () {
    int iflag;
    F77_SYMBOL(test1)(&iflag);
-@@ -29606,6 +29629,14 @@ else
+@@ -29721,6 +29744,14 @@ else
  #else
  # define F77_SYMBOL(x)   x
  #endif
diff --git a/math/R/patches/patch-ad b/math/R/patches/patch-ad
index 85b1618b8af..1c1ed9c34eb 100644
--- a/math/R/patches/patch-ad
+++ b/math/R/patches/patch-ad
@@ -1,8 +1,9 @@
-$NetBSD: patch-ad,v 1.15 2012/12/17 09:08:47 wen Exp $
+$NetBSD: patch-ad,v 1.16 2013/08/13 19:53:30 markd Exp $
 Adjust EXTRA_LIBS and @WANT_R_SHLIB_TRUE@R_bin_LDADD
---- src/main/Makefile.in.orig	2012-03-01 23:02:24.000000000 +0000
+
+--- src/main/Makefile.in.orig	2013-03-05 23:02:40.000000000 +0000
 +++ src/main/Makefile.in
-@@ -98,14 +98,14 @@ EXTRA_STATIC_LIBS = \
+@@ -95,13 +95,13 @@ EXTRA_STATIC_LIBS = \
    $(R_ZLIBS) $(R_BZLIBS) $(R_PCRE) $(R_TRE) $(R_XDR) $(R_XZ) $(R_LIBINTL)
  STATIC_LIBS = $(MAIN_LIBS) $(EXTRA_STATIC_LIBS)
  
@@ -10,9 +11,8 @@ Adjust EXTRA_LIBS and @WANT_R_SHLIB_TRUE@R_bin_LDADD
 +EXTRA_LIBS = $(BLAS_LIBS) $(FLIBS) $(R_XTRA_LIBS) @LIBINTL@ $(READLINE_LIBS) $(LIBS) @LIBMULTITHREAD@
  
  R_binary = R.bin
- R_bin_OBJECTS = Rmain.o @BUILD_LTO_TRUE@@WANT_R_SHLIB_FALSE@$(OBJECTS)
- @BUILD_LTO_TRUE@@WANT_R_SHLIB_FALSE@R_bin_LDADD = $(MAIN_OBJS) $(EXTRA_STATIC_LIBS) $(EXTRA_LIBS)
- @BUILD_LTO_FALSE@@WANT_R_SHLIB_FALSE@R_bin_LDADD = libR.a $(EXTRA_LIBS)
+ R_bin_OBJECTS = Rmain.o @WANT_R_SHLIB_FALSE@$(OBJECTS)
+ @WANT_R_SHLIB_FALSE@R_bin_LDADD = $(MAIN_OBJS) $(EXTRA_STATIC_LIBS) $(EXTRA_LIBS)
  ## Linked against -lRblas becasue -lR is and otherwise ld complains.
 -@WANT_R_SHLIB_TRUE@R_bin_LDADD = -L../../lib@R_ARCH@ -lR @BLAS_SHLIB_TRUE@-lRblas
 +@WANT_R_SHLIB_TRUE@R_bin_LDADD = -L../../lib@R_ARCH@ ${COMPILER_RPATH_FLAG}$(Rexeclibdir) -lR @BLAS_SHLIB_TRUE@-lRblas
diff --git a/math/R/patches/patch-src_library_stats_src_cov.c b/math/R/patches/patch-src_library_stats_src_cov.c
new file mode 100644
index 00000000000..d2933585fc1
--- /dev/null
+++ b/math/R/patches/patch-src_library_stats_src_cov.c
@@ -0,0 +1,17 @@
+$NetBSD: patch-src_library_stats_src_cov.c,v 1.1 2013/08/13 19:53:30 markd Exp $
+
+No sqrtl() in NetBSD 6.x
+
+--- src/library/stats/src/cov.c.orig	2013-03-05 23:02:24.000000000 +0000
++++ src/library/stats/src/cov.c
+@@ -27,6 +27,10 @@
+ 
+ #include "statsR.h"
+ 
++#ifdef __NetBSD__
++#define sqrtl sqrt
++#endif
++
+ static SEXP corcov(SEXP x, SEXP y, SEXP na_method, SEXP kendall, Rboolean cor);
+ 
+ 
diff --git a/math/R/patches/patch-src_main_format.c b/math/R/patches/patch-src_main_format.c
index 14e8b62a0f1..8d91689b1b3 100644
--- a/math/R/patches/patch-src_main_format.c
+++ b/math/R/patches/patch-src_main_format.c
@@ -1,19 +1,19 @@
-$NetBSD: patch-src_main_format.c,v 1.3 2012/12/17 09:08:47 wen Exp $
+$NetBSD: patch-src_main_format.c,v 1.4 2013/08/13 19:53:30 markd Exp $
 
 NetBSD does not have rintl() or floorl() so use the OpenBSD implementation
 of rintl() in that case.  The same case exists for DragonFly.
 
---- src/main/format.c.orig	2012-04-15 22:05:34.000000000 +0000
+--- src/main/format.c.orig	2013-03-05 23:02:40.000000000 +0000
 +++ src/main/format.c
-@@ -130,6 +130,7 @@ void formatInteger(int *x, int n, int *f
+@@ -130,6 +130,7 @@ void formatInteger(int *x, R_xlen_t n, i
  # define R_nearbyintl rintl
  # else
  # define R_nearbyintl private_nearbyintl
 +# if !defined(__NetBSD__) && !defined(__DragonFly__)
- long double private_nearbyintl(long double x)
+ LDOUBLE private_nearbyintl(LDOUBLE x)
  {
-     long double x1;
-@@ -142,6 +143,55 @@ long double private_nearbyintl(long doub
+     LDOUBLE x1;
+@@ -142,6 +143,55 @@ LDOUBLE private_nearbyintl(LDOUBLE x)
          if (x/2.0 == floorl(x/2.0)) return(x); else return(x1);
      }
  }
diff --git a/math/R/patches/patch-src_nmath_dnbeta.c b/math/R/patches/patch-src_nmath_dnbeta.c
new file mode 100644
index 00000000000..534b3d4b278
--- /dev/null
+++ b/math/R/patches/patch-src_nmath_dnbeta.c
@@ -0,0 +1,15 @@
+$NetBSD: patch-src_nmath_dnbeta.c,v 1.1 2013/08/13 19:53:30 markd Exp $
+
+No logl() in NetBSD 6.x
+
+--- src/nmath/dnbeta.c.orig	2013-03-05 23:02:41.000000000 +0000
++++ src/nmath/dnbeta.c
+@@ -118,7 +118,7 @@ double dnbeta(double x, double a, double
+ 	sum += term;
+     } while (term > sum * eps);
+ 
+-#ifdef HAVE_LONG_DOUBLE
++#if defined(HAVE_LONG_DOUBLE) && ! defined(__NetBSD__)
+     return R_D_exp((double)(p_k + logl(sum)));
+ #else
+     return R_D_exp((double)(p_k + log(sum)));
diff --git a/math/R/patches/patch-src_nmath_pnbeta.c b/math/R/patches/patch-src_nmath_pnbeta.c
new file mode 100644
index 00000000000..5a2f2c47573
--- /dev/null
+++ b/math/R/patches/patch-src_nmath_pnbeta.c
@@ -0,0 +1,15 @@
+$NetBSD: patch-src_nmath_pnbeta.c,v 1.1 2013/08/13 19:53:30 markd Exp $
+
+No logl() in NetBSD 6.x
+
+--- src/nmath/pnbeta.c.orig	2013-03-05 23:02:41.000000000 +0000
++++ src/nmath/pnbeta.c
+@@ -92,7 +92,7 @@ pnbeta2(double x, double o_x, double a, 
+ 
+     /* return R_DT_val(ans), but we want to warn about cancellation here */
+     if (lower_tail)
+-#ifdef HAVE_LONG_DOUBLE
++#if defined(HAVE_LONG_DOUBLE) && ! defined(__NetBSD__)
+ 	return (double) (log_p ? logl(ans) : ans);
+ #else
+ 	return log_p ? log(ans) : ans;
diff --git a/math/R/patches/patch-src_nmath_pnchisq.c b/math/R/patches/patch-src_nmath_pnchisq.c
new file mode 100644
index 00000000000..bad1681cf57
--- /dev/null
+++ b/math/R/patches/patch-src_nmath_pnchisq.c
@@ -0,0 +1,18 @@
+$NetBSD: patch-src_nmath_pnchisq.c,v 1.1 2013/08/13 19:53:30 markd Exp $
+
+No expl() in NetBSD 6.x.
+
+--- src/nmath/pnchisq.c.orig	2013-03-05 23:02:41.000000000 +0000
++++ src/nmath/pnchisq.c
+@@ -27,7 +27,11 @@
+  */
+ 
+ #ifdef HAVE_LONG_DOUBLE
++#ifdef __NetBSD__
++# define EXP exp
++#else
+ # define EXP expl
++#endif
+ # define FABS fabsl
+ #else
+ # define EXP exp