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author | adam <adam@pkgsrc.org> | 2022-07-05 11:00:16 +0000 |
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committer | adam <adam@pkgsrc.org> | 2022-07-05 11:00:16 +0000 |
commit | d7c5dbfb2b29051473ca984120cf89bdc5749b3a (patch) | |
tree | 54ad19098da17e0097b3d4ccea20a0635812feff /security/pakemon/patches | |
parent | d788bd0ab040e7f105f6a8acd5179edcee517252 (diff) | |
download | pkgsrc-d7c5dbfb2b29051473ca984120cf89bdc5749b3a.tar.gz |
htslib: updated to 1.15.1
1.15.1
Security fix: Fixed broken error reporting in the sam_cap_mapq() function, due to a missing hts_log() parameter. Prior to this fix it was possible to abuse the log message format string by passing a specially crafted alignment record to this function.
HTSlib now uses libhtscodecs release 1.2.2. This fixes a number of bugs where invalid compressed data could trigger usage of uninitialised values.
Fixed excessive memory used by multi-threaded SAM output on long reads.
Fixed a bug where tabix would misinterpret region specifiers starting at position 0. It will also now warn if the file being indexed is supposed to be 1-based but has positions less than or equal to 0.
The VCF header parser will now issue a warning if it finds an INFO header with Type=Flag but Number not equal to 0. It will also ignore the incorrect Number so the flag can be used.
Diffstat (limited to 'security/pakemon/patches')
0 files changed, 0 insertions, 0 deletions