diff options
| -rw-r--r-- | biology/puzzle/Makefile | 15 | ||||
| -rw-r--r-- | biology/puzzle/PLIST | 12 | ||||
| -rw-r--r-- | biology/puzzle/distinfo | 8 | ||||
| -rw-r--r-- | biology/puzzle/patches/patch-aa | 13 | ||||
| -rw-r--r-- | biology/puzzle/patches/patch-ab | 22 |
5 files changed, 20 insertions, 50 deletions
diff --git a/biology/puzzle/Makefile b/biology/puzzle/Makefile index e04296d81a3..449316a2d1f 100644 --- a/biology/puzzle/Makefile +++ b/biology/puzzle/Makefile @@ -1,7 +1,7 @@ -# $NetBSD: Makefile,v 1.3 2001/07/08 13:36:33 jtb Exp $ +# $NetBSD: Makefile,v 1.4 2003/05/10 23:46:15 jtb Exp $ -DISTNAME= tree-puzzle-5.0 -PKGNAME= puzzle-5.0 +DISTNAME= tree-puzzle-5.1 +PKGNAME= puzzle-5.1 CATEGORIES= biology MASTER_SITES= http://members.tripod.de/korbi/puzzle/ \ ftp://ftp.ebi.ac.uk/pub/software/unix/puzzle/ \ @@ -19,10 +19,13 @@ GNU_CONFIGURE= yes post-install: ${INSTALL_DATA_DIR} ${PREFIX}/share/doc/puzzle - cd ${WRKSRC}/doc; ${INSTALL_DATA} manual.html *.gif \ + cd ${WRKSRC}/doc && ${INSTALL_DATA} tree-puzzle.pdf \ ${PREFIX}/share/doc/puzzle + ${INSTALL_DATA_DIR} ${PREFIX}/share/doc/html/puzzle + cd ${WRKSRC}/doc && ${INSTALL_DATA} tree-puzzle.html \ + *.gif ${PREFIX}/share/doc/html/puzzle ${INSTALL_DATA_DIR} ${PREFIX}/share/examples/puzzle - cd ${WRKSRC}/data; ${INSTALL_DATA} atp6.a globin.a \ - marswolf.n primates.b ${PREFIX}/share/examples/puzzle + cd ${WRKSRC}/data && ${INSTALL_DATA} EF.* *.a *.n *.b \ + ${PREFIX}/share/examples/puzzle .include "../../mk/bsd.pkg.mk" diff --git a/biology/puzzle/PLIST b/biology/puzzle/PLIST index d11c95b0e34..ff59d506049 100644 --- a/biology/puzzle/PLIST +++ b/biology/puzzle/PLIST @@ -1,12 +1,16 @@ -@comment $NetBSD: PLIST,v 1.1 2001/10/31 21:28:12 zuntum Exp $ +@comment $NetBSD: PLIST,v 1.2 2003/05/10 23:46:15 jtb Exp $ bin/ppuzzle bin/puzzle -share/doc/puzzle/manual.html -share/doc/puzzle/ppuzzle.gif -share/doc/puzzle/puzzle.gif +share/doc/html/puzzle/ppuzzle.gif +share/doc/html/puzzle/puzzle.gif +share/doc/html/puzzle/tree-puzzle.html +share/doc/puzzle/tree-puzzle.pdf +share/examples/puzzle/EF.3trees +share/examples/puzzle/EF.phy share/examples/puzzle/atp6.a share/examples/puzzle/globin.a share/examples/puzzle/marswolf.n share/examples/puzzle/primates.b @dirrm share/doc/puzzle +@dirrm share/doc/html/puzzle @dirrm share/examples/puzzle diff --git a/biology/puzzle/distinfo b/biology/puzzle/distinfo index cf329710c3b..383522b0a7c 100644 --- a/biology/puzzle/distinfo +++ b/biology/puzzle/distinfo @@ -1,6 +1,4 @@ -$NetBSD: distinfo,v 1.3 2001/07/08 13:36:33 jtb Exp $ +$NetBSD: distinfo,v 1.4 2003/05/10 23:46:15 jtb Exp $ -SHA1 (tree-puzzle-5.0.tar.gz) = 8c73c003a874c4c701b21b9fbdf0bbed496eda1a -Size (tree-puzzle-5.0.tar.gz) = 190137 bytes -SHA1 (patch-aa) = 4391e9ba6d8b01b59240f80dee09bf33b04e12ff -SHA1 (patch-ab) = cf32c3bf87b3fba7b3e3476ae2ceb489610d2463 +SHA1 (tree-puzzle-5.1.tar.gz) = f55464587cd04c9afb0eb83231318d91b8614798 +Size (tree-puzzle-5.1.tar.gz) = 612216 bytes diff --git a/biology/puzzle/patches/patch-aa b/biology/puzzle/patches/patch-aa deleted file mode 100644 index 22c98752f2d..00000000000 --- a/biology/puzzle/patches/patch-aa +++ /dev/null @@ -1,13 +0,0 @@ -$NetBSD: patch-aa,v 1.2 2001/07/08 13:36:33 jtb Exp $ - ---- src/ml.h.orig Thu May 24 05:12:06 2001 -+++ src/ml.h -@@ -173,7 +173,7 @@ - /* function prototypes of all ml function */ - - void convfreq(dvector); --void radixsort(cmatrix, ivector, int, int, int *); -+void my_radixsort(cmatrix, ivector, int, int, int *); - void condenceseq(cmatrix, ivector, cmatrix, ivector, int, int, int); - void countconstantsites(cmatrix, ivector, int, int, int *, int*); - void evaluateseqs(void); diff --git a/biology/puzzle/patches/patch-ab b/biology/puzzle/patches/patch-ab deleted file mode 100644 index 4781fa4c25c..00000000000 --- a/biology/puzzle/patches/patch-ab +++ /dev/null @@ -1,22 +0,0 @@ -$NetBSD: patch-ab,v 1.2 2001/07/08 13:36:33 jtb Exp $ - ---- src/ml1.c.orig Thu May 24 05:12:15 2001 -+++ src/ml1.c -@@ -78,7 +78,7 @@ - } - - /* sort site patters of original input data */ --void radixsort(cmatrix seqchar, ivector ali, int maxspc, int maxsite, -+void my_radixsort(cmatrix seqchar, ivector ali, int maxspc, int maxsite, - int *numptrn) - { - int i, j, k, l, n, pass; -@@ -196,7 +196,7 @@ - - convfreq(Freqtpm); /* make all frequencies slightly different */ - ali = new_ivector(Maxsite); -- radixsort(Seqchar, ali, Maxspc, Maxsite, &Numptrn); -+ my_radixsort(Seqchar, ali, Maxspc, Maxsite, &Numptrn); - Seqpat = new_cmatrix(Maxspc, Numptrn); - constpat = new_ivector(Numptrn); - Weight = new_ivector(Numptrn); |