diff options
46 files changed, 46 insertions, 133 deletions
diff --git a/biology/arka/Makefile b/biology/arka/Makefile index c50ed7679ca..85b645e6063 100644 --- a/biology/arka/Makefile +++ b/biology/arka/Makefile @@ -1,4 +1,4 @@ -# $NetBSD: Makefile,v 1.12 2011/04/22 13:43:02 obache Exp $ +# $NetBSD: Makefile,v 1.13 2012/09/11 20:32:10 asau Exp $ # DISTNAME= arka-0.11 @@ -13,9 +13,6 @@ COMMENT= Graphic interface for the programs from the GP package DEPENDS+= gp-[0-9]*:../../biology/gp -PKG_DESTDIR_SUPPORT= user-destdir - - CONF_FILES= ${PREFIX}/share/examples/arka/arkarc ${PKG_SYSCONFDIR}/arkarc CPPFLAGS+= -DARKA_GLOBAL=\"${PKG_SYSCONFDIR}/arkarc\" CPPFLAGS+= -DARKA_PROGRAMS=\"${PKG_SYSCONFDIR}/arkarc\" diff --git a/biology/azara/Makefile b/biology/azara/Makefile index 19463c1216a..fdec11c7799 100644 --- a/biology/azara/Makefile +++ b/biology/azara/Makefile @@ -1,4 +1,4 @@ -# $NetBSD: Makefile,v 1.9 2011/12/09 14:36:33 drochner Exp $ +# $NetBSD: Makefile,v 1.10 2012/09/11 20:32:10 asau Exp $ # DISTNAME= azara-2.7-src @@ -11,8 +11,6 @@ MAINTAINER= mchittur@cs.nmsu.edu HOMEPAGE= http://www.ccpn.ac.uk/azara/ COMMENT= Programs to process and view NMR data -PKG_DESTDIR_SUPPORT= user-destdir - MAKE_JOBS_SAFE= no WRKSRC= ${WRKDIR}/azara-2.7 diff --git a/biology/bioperl/Makefile b/biology/bioperl/Makefile index c02e305a815..e6e57a5f77b 100644 --- a/biology/bioperl/Makefile +++ b/biology/bioperl/Makefile @@ -1,4 +1,4 @@ -# $NetBSD: Makefile,v 1.21 2011/08/14 07:27:39 obache Exp $ +# $NetBSD: Makefile,v 1.22 2012/09/11 20:32:10 asau Exp $ # DISTNAME= bioperl-0.7.0 @@ -10,8 +10,6 @@ MAINTAINER= pkgsrc-users@NetBSD.org HOMEPAGE= http://bioperl.org/ COMMENT= Perl tools for computational molecular biology -PKG_DESTDIR_SUPPORT= user-destdir - USE_TOOLS+= pax REPLACE_PERL+= Bio/LiveSeq/Chain.pm diff --git a/biology/bodr/Makefile b/biology/bodr/Makefile index b99707ee73e..f4f26442d87 100644 --- a/biology/bodr/Makefile +++ b/biology/bodr/Makefile @@ -1,4 +1,4 @@ -# $NetBSD: Makefile,v 1.2 2012/06/14 07:44:44 sbd Exp $ +# $NetBSD: Makefile,v 1.3 2012/09/11 20:32:11 asau Exp $ # DISTNAME= bodr-9 @@ -11,8 +11,6 @@ HOMEPAGE= http://blueobelisk.org/ COMMENT= Blue Obelisk Data Repository LICENSE= mit -PKG_DESTDIR_SUPPORT= user-destdir - GNU_CONFIGURE= yes USE_TOOLS+= pkg-config gmake perl USE_LANGUAGES= # none diff --git a/biology/chemical-mime-data/Makefile b/biology/chemical-mime-data/Makefile index 2b4c1f29ab7..3b320c02127 100644 --- a/biology/chemical-mime-data/Makefile +++ b/biology/chemical-mime-data/Makefile @@ -1,4 +1,4 @@ -# $NetBSD: Makefile,v 1.1.1.1 2011/10/05 22:10:56 ryoon Exp $ +# $NetBSD: Makefile,v 1.2 2012/09/11 20:32:11 asau Exp $ # DISTNAME= chemical-mime-data-0.1.94 @@ -10,8 +10,6 @@ HOMEPAGE= http://chemical-mime.sourceforge.net/ COMMENT= Chemical mime and file type support for desktops LICENSE= gnu-lgpl-v2.1 # or later -PKG_DESTDIR_SUPPORT= user-destdir - BUILD_DEPENDS+= ImageMagick-[0-9]*:../../graphics/ImageMagick BUILD_DEPENDS+= libxslt-[0-9]*:../../textproc/libxslt diff --git a/biology/chemtool/Makefile b/biology/chemtool/Makefile index 285d75789d9..f08b7fb9ff3 100644 --- a/biology/chemtool/Makefile +++ b/biology/chemtool/Makefile @@ -1,4 +1,4 @@ -# $NetBSD: Makefile,v 1.38 2012/09/07 19:16:13 adam Exp $ +# $NetBSD: Makefile,v 1.39 2012/09/11 20:32:11 asau Exp $ DISTNAME= chemtool-1.6.13 PKGREVISION= 3 @@ -10,7 +10,6 @@ HOMEPAGE= http://ruby.chemie.uni-freiburg.de/~martin/chemtool/ COMMENT= Program for drawing organic molecules PKG_INSTALLATION_TYPES= overwrite pkgviews -PKG_DESTDIR_SUPPORT= user-destdir USE_PKGLOCALEDIR= yes USE_TOOLS+= gmake pkg-config diff --git a/biology/clustalw/Makefile b/biology/clustalw/Makefile index 220ee238e19..4899a7c60ab 100644 --- a/biology/clustalw/Makefile +++ b/biology/clustalw/Makefile @@ -1,4 +1,4 @@ -# $NetBSD: Makefile,v 1.11 2008/03/03 01:10:05 jlam Exp $ +# $NetBSD: Makefile,v 1.12 2012/09/11 20:32:11 asau Exp $ DISTNAME= clustalw1.83.UNIX PKGNAME= clustalw-1.83 @@ -11,7 +11,6 @@ HOMEPAGE= http://bips.u-strasbg.fr/fr/Documentation/ClustalW/ COMMENT= General purpose multiple alignment program for DNA or proteins PKG_INSTALLATION_TYPES= overwrite pkgviews -PKG_DESTDIR_SUPPORT= user-destdir MAKE_FILE= makefile BUILD_TARGET= clustalw diff --git a/biology/coalesce/Makefile b/biology/coalesce/Makefile index a98c1015562..65a021570bf 100644 --- a/biology/coalesce/Makefile +++ b/biology/coalesce/Makefile @@ -1,4 +1,4 @@ -# $NetBSD: Makefile,v 1.8 2009/05/16 22:15:57 zafer Exp $ +# $NetBSD: Makefile,v 1.9 2012/09/11 20:32:11 asau Exp $ # DISTNAME= coalesce1.5b @@ -10,8 +10,6 @@ MAINTAINER= brook@nmsu.edu HOMEPAGE= http://evolution.genetics.washington.edu/lamarc/coalesce.html COMMENT= Estimates effective population size and mutation rate -PKG_DESTDIR_SUPPORT= user-destdir - WRKSRC= ${WRKDIR}/coalesce1.5beta BUILD_TARGET= coalesce diff --git a/biology/fastDNAml/Makefile b/biology/fastDNAml/Makefile index 4e80c773e7a..16c65cf965e 100644 --- a/biology/fastDNAml/Makefile +++ b/biology/fastDNAml/Makefile @@ -1,4 +1,4 @@ -# $NetBSD: Makefile,v 1.9 2008/03/03 01:10:05 jlam Exp $ +# $NetBSD: Makefile,v 1.10 2012/09/11 20:32:12 asau Exp $ DISTNAME= fastDNAml_1.2.2 PKGNAME= fastDNAml-1.2.2 @@ -9,8 +9,6 @@ MAINTAINER= babafou@babafou.eu.org HOMEPAGE= http://geta.life.uiuc.edu/~gary/programs/fastDNAml.html COMMENT= Program derived from Joseph Felsenstein's version 3.3 DNAML -PKG_DESTDIR_SUPPORT= user-destdir - WRKSRC= ${WRKDIR}/${DISTNAME}/source INSTALLATION_DIRS= bin diff --git a/biology/fluctuate/Makefile b/biology/fluctuate/Makefile index 4e608478835..e540a265b39 100644 --- a/biology/fluctuate/Makefile +++ b/biology/fluctuate/Makefile @@ -1,4 +1,4 @@ -# $NetBSD: Makefile,v 1.8 2008/03/03 01:10:05 jlam Exp $ +# $NetBSD: Makefile,v 1.9 2012/09/11 20:32:12 asau Exp $ # DISTNAME= fluctuate1.4.src.doc @@ -10,8 +10,6 @@ MAINTAINER= brook@nmsu.edu HOMEPAGE= http://evolution.genetics.washington.edu/lamarc/fluctuate.html COMMENT= Estimation of population growth rate -PKG_DESTDIR_SUPPORT= user-destdir - WRKSRC= ${WRKDIR}/fluctuate1.4 BUILD_TARGET= fluctuate diff --git a/biology/genesplicer/Makefile b/biology/genesplicer/Makefile index c59e199d035..53c1f335cea 100644 --- a/biology/genesplicer/Makefile +++ b/biology/genesplicer/Makefile @@ -1,4 +1,4 @@ -# $NetBSD: Makefile,v 1.11 2008/05/26 02:13:16 joerg Exp $ +# $NetBSD: Makefile,v 1.12 2012/09/11 20:32:12 asau Exp $ # DISTNAME= GeneSplicer @@ -10,8 +10,6 @@ MAINTAINER= hdp@cs.nmsu.edu HOMEPAGE= ftp://ftp.tigr.org/pub/software/GeneSplicer/ COMMENT= Computational Method for Splice Site Prediction -PKG_DESTDIR_SUPPORT= user-destdir - USE_LANGUAGES= c c++ USE_TOOLS+= pax diff --git a/biology/glimmer/Makefile b/biology/glimmer/Makefile index 4a532ff2c11..a3ac0a1f484 100644 --- a/biology/glimmer/Makefile +++ b/biology/glimmer/Makefile @@ -1,4 +1,4 @@ -# $NetBSD: Makefile,v 1.10 2008/03/03 01:10:06 jlam Exp $ +# $NetBSD: Makefile,v 1.11 2012/09/11 20:32:12 asau Exp $ # DISTNAME= glimmer213 @@ -10,8 +10,6 @@ MAINTAINER= hdp@cs.nmsu.edu HOMEPAGE= ftp://ftp.tigr.org/pub/software/Glimmer/ COMMENT= System for finding genes in microbial DNA -PKG_DESTDIR_SUPPORT= user-destdir - USE_LANGUAGES= c c++ WRKSRC= ${WRKDIR}/glimmer2.13 diff --git a/biology/gnome-chemistry-utils/Makefile b/biology/gnome-chemistry-utils/Makefile index 3494d1c36e3..a4f6190db99 100644 --- a/biology/gnome-chemistry-utils/Makefile +++ b/biology/gnome-chemistry-utils/Makefile @@ -1,4 +1,4 @@ -# $NetBSD: Makefile,v 1.11 2012/09/07 19:16:13 adam Exp $ +# $NetBSD: Makefile,v 1.12 2012/09/11 20:32:12 asau Exp $ # DISTNAME= gnome-chemistry-utils-0.12.13 @@ -12,8 +12,6 @@ HOMEPAGE= http://gchemutils.nongnu.org/ COMMENT= GChemPaint, a 2D chemical editor and other programs LICENSE= gnu-gpl-v2 AND gnu-fdl-v1.1 -PKG_DESTDIR_SUPPORT= user-destdir - GNU_CONFIGURE= yes USE_LIBTOOL= yes USE_TOOLS+= gmake intltool pkg-config msgfmt xgettext msgmerge perl diff --git a/biology/gp/Makefile b/biology/gp/Makefile index 7bac9653c3a..0f43601c1f3 100644 --- a/biology/gp/Makefile +++ b/biology/gp/Makefile @@ -1,4 +1,4 @@ -# $NetBSD: Makefile,v 1.7 2009/07/08 15:14:44 joerg Exp $ +# $NetBSD: Makefile,v 1.8 2012/09/11 20:32:12 asau Exp $ # DISTNAME= gp-0.26 @@ -10,8 +10,6 @@ MAINTAINER= hdp@cs.nmsu.edu HOMEPAGE= http://www.bioinformatics.org/genpak/ COMMENT= Manipulate DNA/RNA sequence in a Unix fashion -PKG_DESTDIR_SUPPORT= user-destdir - INSTALLATION_DIRS= bin ${PKGMANDIR}/man1 share/examples .include "../../mk/bsd.pkg.mk" diff --git a/biology/gromacs/Makefile b/biology/gromacs/Makefile index 34b8dee2369..277697a6cbe 100644 --- a/biology/gromacs/Makefile +++ b/biology/gromacs/Makefile @@ -1,4 +1,4 @@ -# $NetBSD: Makefile,v 1.9 2012/06/14 07:45:27 sbd Exp $ +# $NetBSD: Makefile,v 1.10 2012/09/11 20:32:12 asau Exp $ # DISTNAME= gromacs-4.5.5 @@ -11,8 +11,6 @@ HOMEPAGE= http://www.gromacs.org/ COMMENT= Molecular dynamics package LICENSE= gnu-gpl-v2 -PKG_DESTDIR_SUPPORT= user-destdir - # Official recommendation is not to use the gcc 4.1.x set of compilers. GNU_CONFIGURE= yes diff --git a/biology/hmmer/Makefile b/biology/hmmer/Makefile index a02dad9a997..59668966d32 100644 --- a/biology/hmmer/Makefile +++ b/biology/hmmer/Makefile @@ -1,4 +1,4 @@ -# $NetBSD: Makefile,v 1.12 2009/07/08 15:20:04 joerg Exp $ +# $NetBSD: Makefile,v 1.13 2012/09/11 20:32:12 asau Exp $ # DISTNAME= hmmer-2.3.2 @@ -10,7 +10,6 @@ HOMEPAGE= http://hmmer.janelia.org/ COMMENT= Implementation of profile HMM software for protein sequence analysis PKG_INSTALLATION_TYPES= overwrite pkgviews -PKG_DESTDIR_SUPPORT= user-destdir GNU_CONFIGURE= yes diff --git a/biology/lucy/Makefile b/biology/lucy/Makefile index 85302e61db7..c1bfc2a92cb 100644 --- a/biology/lucy/Makefile +++ b/biology/lucy/Makefile @@ -1,4 +1,4 @@ -# $NetBSD: Makefile,v 1.7 2010/09/19 07:13:37 obache Exp $ +# $NetBSD: Makefile,v 1.8 2012/09/11 20:32:13 asau Exp $ # DISTNAME= ${PKGNAME:S/-//} @@ -12,7 +12,6 @@ COMMENT= Sequence Cleanup Program #LICENSE= LICENSE file say "artistic", but bit differ. PKG_INSTALLATION_TYPES= overwrite pkgviews -PKG_DESTDIR_SUPPORT= user-destdir WRKSRC= ${WRKDIR}/${PKGNAME_NOREV}p diff --git a/biology/mopac/Makefile b/biology/mopac/Makefile index d2918ed2202..4281972e968 100644 --- a/biology/mopac/Makefile +++ b/biology/mopac/Makefile @@ -1,4 +1,4 @@ -# $NetBSD: Makefile,v 1.6 2010/07/30 10:36:23 asau Exp $ +# $NetBSD: Makefile,v 1.7 2012/09/11 20:32:13 asau Exp $ # DISTNAME= mopac7 @@ -17,8 +17,6 @@ MAINTAINER= pkgsrc-users@NetBSD.org HOMEPAGE= http://server.ccl.net/cca/software/LINUX/mopac7/index.shtml COMMENT= Molecular energy calculation program -PKG_DESTDIR_SUPPORT= user-destdir - WRKSRC= ${WRKDIR}/mopac7 BUILD_TARGET= MOPAC7 USE_TOOLS+= gmake pax diff --git a/biology/mummer/Makefile b/biology/mummer/Makefile index 04190ef8564..bb583251cf4 100644 --- a/biology/mummer/Makefile +++ b/biology/mummer/Makefile @@ -1,4 +1,4 @@ -# $NetBSD: Makefile,v 1.18 2008/10/11 22:01:13 schwarz Exp $ +# $NetBSD: Makefile,v 1.19 2012/09/11 20:32:13 asau Exp $ # DISTNAME= MUMmer3.20 @@ -10,8 +10,6 @@ MAINTAINER= hdp@cs.nmsu.edu HOMEPAGE= http://mummer.sourceforge.net/ COMMENT= System for aligning whole genome sequences -PKG_DESTDIR_SUPPORT= user-destdir - WRKSRC= ${WRKDIR}/${DISTNAME} USE_TOOLS+= csh:run gmake perl:run pax USE_LANGUAGES= c c++ diff --git a/biology/nut/Makefile b/biology/nut/Makefile index abb6f6ff54a..4c55f4957e5 100644 --- a/biology/nut/Makefile +++ b/biology/nut/Makefile @@ -1,4 +1,4 @@ -# $NetBSD: Makefile,v 1.27 2010/09/19 07:52:19 obache Exp $ +# $NetBSD: Makefile,v 1.28 2012/09/11 20:32:13 asau Exp $ DISTNAME= nut-15.8 CATEGORIES= biology @@ -9,8 +9,6 @@ HOMEPAGE= http://nut.sourceforge.net/ COMMENT= Record what you eat and analyze your meals LICENSE= gnu-gpl-v2 -PKG_DESTDIR_SUPPORT= user-destdir - BUILD_TARGET= nut USE_TOOLS+= gmake diff --git a/biology/openbabel/Makefile b/biology/openbabel/Makefile index a642827e1d9..56eb9d96041 100644 --- a/biology/openbabel/Makefile +++ b/biology/openbabel/Makefile @@ -1,4 +1,4 @@ -# $NetBSD: Makefile,v 1.7 2012/09/07 19:16:13 adam Exp $ +# $NetBSD: Makefile,v 1.8 2012/09/11 20:32:13 asau Exp $ # DISTNAME= openbabel-2.3.0 @@ -11,8 +11,6 @@ HOMEPAGE= http://openbabel.org/ COMMENT= Chemistry file translation program LICENSE= gnu-gpl-v2 -PKG_DESTDIR_SUPPORT= user-destdir - USE_LANGUAGES= c c++ USE_CMAKE= yes diff --git a/biology/pdbalign/Makefile b/biology/pdbalign/Makefile index a8cfeeafa55..c15e02d83fd 100644 --- a/biology/pdbalign/Makefile +++ b/biology/pdbalign/Makefile @@ -1,4 +1,4 @@ -# $NetBSD: Makefile,v 1.5 2008/03/03 01:10:06 jlam Exp $ +# $NetBSD: Makefile,v 1.6 2012/09/11 20:32:13 asau Exp $ # DISTNAME= pdbalign @@ -10,8 +10,6 @@ MAINTAINER= hdp@cs.nmsu.edu HOMEPAGE= #empty COMMENT= Prediction of Protein Secondary Structure and Active Sites -PKG_DESTDIR_SUPPORT= user-destdir - WRKSRC= ${WRKDIR} INSTALLATION_DIRS= bin diff --git a/biology/phylip/Makefile b/biology/phylip/Makefile index 690cac2c8ed..cdfbaa7ed46 100644 --- a/biology/phylip/Makefile +++ b/biology/phylip/Makefile @@ -1,4 +1,4 @@ -# $NetBSD: Makefile,v 1.23 2010/07/10 11:26:32 obache Exp $ +# $NetBSD: Makefile,v 1.24 2012/09/11 20:32:13 asau Exp $ DISTNAME= phylip-3.69 CATEGORIES= biology @@ -13,8 +13,6 @@ RESTRICTED= Distribution permitted only if no fee is charged. NO_SRC_ON_CDROM= ${RESTRICTED} NO_BIN_ON_CDROM= ${RESTRICTED} -PKG_DESTDIR_SUPPORT= user-destdir - WRKSRC= ${WRKDIR}/${DISTNAME}/src INSTALLATION_DIRS= bin share/fonts/phylip share/doc/phylip diff --git a/biology/primer3/Makefile b/biology/primer3/Makefile index f2a323dc54d..c08a9f2811a 100644 --- a/biology/primer3/Makefile +++ b/biology/primer3/Makefile @@ -1,4 +1,4 @@ -# $NetBSD: Makefile,v 1.1.1.1 2011/10/31 21:25:57 brook Exp $ +# $NetBSD: Makefile,v 1.2 2012/09/11 20:32:13 asau Exp $ # VERS= 2.2.3 @@ -12,8 +12,6 @@ HOMEPAGE= http://primer3.sourceforge.net/ COMMENT= Design PCR primers LICENSE= gnu-gpl-v2 -PKG_DESTDIR_SUPPORT= user-destdir - USE_LANGUAGES= c c++ USE_TOOLS+= gmake BUILD_DIRS= src diff --git a/biology/profit/Makefile b/biology/profit/Makefile index 8d47c3df322..2fd53021de8 100644 --- a/biology/profit/Makefile +++ b/biology/profit/Makefile @@ -1,4 +1,4 @@ -# $NetBSD: Makefile,v 1.11 2008/05/26 02:13:16 joerg Exp $ +# $NetBSD: Makefile,v 1.12 2012/09/11 20:32:13 asau Exp $ # DISTNAME= ProFitV2.2 @@ -10,8 +10,6 @@ MAINTAINER= hdp@cs.nmsu.edu HOMEPAGE= http://acrmwww.biochem.ucl.ac.uk/programs/profit/index.html COMMENT= Performs least squares fits of two protein structures -PKG_DESTDIR_SUPPORT= user-destdir - USE_TOOLS+= pax BUILD_TARGET= profit diff --git a/biology/puzzle/Makefile b/biology/puzzle/Makefile index 217d11b83b3..1eae97a7d4a 100644 --- a/biology/puzzle/Makefile +++ b/biology/puzzle/Makefile @@ -1,4 +1,4 @@ -# $NetBSD: Makefile,v 1.12 2010/09/19 08:38:14 obache Exp $ +# $NetBSD: Makefile,v 1.13 2012/09/11 20:32:14 asau Exp $ DISTNAME= tree-puzzle-5.2 PKGNAME= ${DISTNAME:S/^tree-//} @@ -10,8 +10,6 @@ HOMEPAGE= http://www.tree-puzzle.de/ COMMENT= Maximum likelihood analysis of molecular sequence data LICENSE= gnu-gpl-v2 -PKG_DESTDIR_SUPPORT= user-destdir - GNU_CONFIGURE= yes INSTALLATION_DIRS= share/doc/puzzle \ diff --git a/biology/py-mol/Makefile b/biology/py-mol/Makefile index 2d7b3b3bbaa..bea64c8b79b 100644 --- a/biology/py-mol/Makefile +++ b/biology/py-mol/Makefile @@ -1,4 +1,4 @@ -# $NetBSD: Makefile,v 1.11 2012/04/08 19:08:45 wiz Exp $ +# $NetBSD: Makefile,v 1.12 2012/09/11 20:32:14 asau Exp $ DISTNAME= pymol-v1.4.1 PKGNAME= ${PYPKGPREFIX}-${DISTNAME:S/pymol-v/mol-/} @@ -17,8 +17,6 @@ USE_TOOLS+= csh:run DEPENDS+= ${PYPKGPREFIX}-numpy-[0-9]*:../../math/py-numpy DEPENDS+= ${PYPKGPREFIX}-Pmw-[0-9]*:../../x11/py-Pmw -PKG_DESTDIR_SUPPORT= user-destdir - WRKSRC= ${WRKDIR}/pymol CONFLICTS= pymol-[0-9]* diff --git a/biology/rasmol/Makefile b/biology/rasmol/Makefile index 39563383016..e9e4c7262ce 100644 --- a/biology/rasmol/Makefile +++ b/biology/rasmol/Makefile @@ -1,4 +1,4 @@ -# $NetBSD: Makefile,v 1.31 2010/12/30 08:33:47 obache Exp $ +# $NetBSD: Makefile,v 1.32 2012/09/11 20:32:14 asau Exp $ DISTNAME= RasMol_2.7.3 PKGNAME= rasmol-2.7.3 @@ -10,8 +10,6 @@ MAINTAINER= pkgsrc-users@NetBSD.org HOMEPAGE= http://www.bernstein-plus-sons.com/software/rasmol/ COMMENT= Molecular Graphics Visualisation Tool -PKG_DESTDIR_SUPPORT= user-destdir - WRKSRC= ${WRKDIR}/${DISTNAME}/src USE_IMAKE= YES USE_TOOLS+= gunzip mkdirhier diff --git a/biology/sewer/Makefile b/biology/sewer/Makefile index cbbad299fed..a965c22dd4b 100644 --- a/biology/sewer/Makefile +++ b/biology/sewer/Makefile @@ -1,4 +1,4 @@ -# $NetBSD: Makefile,v 1.8 2009/08/25 11:56:34 wiz Exp $ +# $NetBSD: Makefile,v 1.9 2012/09/11 20:32:14 asau Exp $ DISTNAME= sewer PKGNAME= sewer-2.6 @@ -12,7 +12,6 @@ HOMEPAGE= http://iubio.bio.indiana.edu/webapps/SeWeR/ COMMENT= SEquence Analysis using WEb Resources PKG_INSTALLATION_TYPES= overwrite pkgviews -PKG_DESTDIR_SUPPORT= user-destdir USE_TOOLS+= pax diff --git a/biology/stride/Makefile b/biology/stride/Makefile index 23c6bcafaae..224baf87017 100644 --- a/biology/stride/Makefile +++ b/biology/stride/Makefile @@ -1,4 +1,4 @@ -# $NetBSD: Makefile,v 1.7 2008/03/03 01:10:06 jlam Exp $ +# $NetBSD: Makefile,v 1.8 2012/09/11 20:32:14 asau Exp $ # DISTNAME= stride @@ -10,8 +10,6 @@ MAINTAINER= hdp@cs.nmsu.edu HOMEPAGE= http://wolf.bi.umist.ac.uk/unix/stride.html COMMENT= Protein secondary structure assignment from atomic coordinates -PKG_DESTDIR_SUPPORT= user-destdir - WRKSRC= ${WRKDIR} INSTALLATION_DIRS= bin diff --git a/biology/xylem/Makefile b/biology/xylem/Makefile index 8f1fd27670f..223bb00ab88 100644 --- a/biology/xylem/Makefile +++ b/biology/xylem/Makefile @@ -1,4 +1,4 @@ -# $NetBSD: Makefile,v 1.9 2009/07/16 15:17:22 joerg Exp $ +# $NetBSD: Makefile,v 1.10 2012/09/11 20:32:14 asau Exp $ # DISTNAME= xylem.1.8.7 @@ -11,7 +11,6 @@ MAINTAINER= hdp@cs.nmsu.edu HOMEPAGE= http://home.cc.umanitoba.ca/~psgendb/XYLEM.html COMMENT= Tools for manipulation of genetic databases -PKG_DESTDIR_SUPPORT= user-destdir MAKE_JOBS_SAFE= no WRKSRC= ${WRKDIR}/xylem diff --git a/parallel/clusterit/Makefile b/parallel/clusterit/Makefile index 6661039a197..a5b8f51a613 100644 --- a/parallel/clusterit/Makefile +++ b/parallel/clusterit/Makefile @@ -1,4 +1,4 @@ -# $NetBSD: Makefile,v 1.19 2008/06/07 11:15:59 obache Exp $ +# $NetBSD: Makefile,v 1.20 2012/09/11 20:36:17 asau Exp $ DISTNAME= clusterit-2.5 PKGREVISION= 1 @@ -9,8 +9,6 @@ MAINTAINER= root@garbled.net HOMEPAGE= http://clusterit.sourceforge.net/ COMMENT= Clustering package for unix -PKG_DESTDIR_SUPPORT= user-destdir - GNU_CONFIGURE= YES BUILDLINK_DEPMETHOD.libXt?= build diff --git a/parallel/ganglia-monitor-core/Makefile b/parallel/ganglia-monitor-core/Makefile index e70b6e56d2c..255165e44eb 100644 --- a/parallel/ganglia-monitor-core/Makefile +++ b/parallel/ganglia-monitor-core/Makefile @@ -1,4 +1,4 @@ -# $NetBSD: Makefile,v 1.39 2012/09/07 19:17:23 adam Exp $ +# $NetBSD: Makefile,v 1.40 2012/09/11 20:36:17 asau Exp $ # DISTNAME= ganglia-3.1.2 @@ -11,8 +11,6 @@ MAINTAINER= pkgsrc-users@NetBSD.org HOMEPAGE= http://ganglia.sourceforge.net/ COMMENT= Ganglia cluster monitor, monitoring daemon -PKG_DESTDIR_SUPPORT= user-destdir - GNU_CONFIGURE= yes SET_LIBDIR= yes diff --git a/parallel/gridscheduler/Makefile b/parallel/gridscheduler/Makefile index 0f60f577c94..d7bcd5fab1d 100644 --- a/parallel/gridscheduler/Makefile +++ b/parallel/gridscheduler/Makefile @@ -1,4 +1,4 @@ -# $NetBSD: Makefile,v 1.3 2012/08/21 23:49:25 marino Exp $ +# $NetBSD: Makefile,v 1.4 2012/09/11 20:36:17 asau Exp $ PKGNAME= gridscheduler-2011.11 DISTNAME= GE2011.11 @@ -12,8 +12,6 @@ COMMENT= Open Grid Scheduler/Grid Engine resource management system BUILD_DEPENDS+= {standalone-tcsh,tcsh}-[0-9]*:../../shells/tcsh -PKG_DESTDIR_SUPPORT= user-destdir - # Not 64-bit clean; crashes during build. NOT_FOR_PLATFORM= ${LP64PLATFORMS} diff --git a/parallel/hwloc/Makefile b/parallel/hwloc/Makefile index 30a5fc3cbc6..2eb60eb680a 100644 --- a/parallel/hwloc/Makefile +++ b/parallel/hwloc/Makefile @@ -1,4 +1,4 @@ -# $NetBSD: Makefile,v 1.4 2012/09/07 19:17:24 adam Exp $ +# $NetBSD: Makefile,v 1.5 2012/09/11 20:36:17 asau Exp $ DISTNAME= hwloc-1.4 PKGREVISION= 2 @@ -10,8 +10,6 @@ HOMEPAGE= http://www.open-mpi.org/projects/hwloc/ COMMENT= Portable Hardware Locality LICENSE= modified-bsd -PKG_DESTDIR_SUPPORT= user-destdir - GNU_CONFIGURE= yes USE_LIBTOOL= yes USE_TOOLS= pkg-config diff --git a/parallel/linda/Makefile b/parallel/linda/Makefile index 423f5bad198..085159ac1db 100644 --- a/parallel/linda/Makefile +++ b/parallel/linda/Makefile @@ -1,4 +1,4 @@ -# $NetBSD: Makefile,v 1.22 2012/03/03 00:13:49 wiz Exp $ +# $NetBSD: Makefile,v 1.23 2012/09/11 20:36:17 asau Exp $ # DISTNAME= linda-0.1.1 @@ -10,8 +10,6 @@ MAINTAINER= pkgsrc-users@NetBSD.org HOMEPAGE= http://sourceforge.net/projects/linda/ COMMENT= Parallel distributed database environment -PKG_DESTDIR_SUPPORT= user-destdir - USE_TOOLS+= pkg-config GNU_CONFIGURE= yes USE_LIBTOOL= yes diff --git a/parallel/mpi-ch/Makefile b/parallel/mpi-ch/Makefile index 124879c003c..4c585219abc 100644 --- a/parallel/mpi-ch/Makefile +++ b/parallel/mpi-ch/Makefile @@ -1,4 +1,4 @@ -# $NetBSD: Makefile,v 1.68 2012/01/11 09:43:25 asau Exp $ +# $NetBSD: Makefile,v 1.69 2012/09/11 20:36:17 asau Exp $ DISTNAME= mpich2-1.4.1p1 CATEGORIES= parallel @@ -11,8 +11,6 @@ COMMENT= Open source MPI and MPI-2 implementation from Univ. of Chicago CONFLICTS+= mpich-[0-9]* # installs bin/mpicc & other wrappers CONFLICTS+= openmpi-[0-9]* # installs bin/mpicc & other wrappers -PKG_DESTDIR_SUPPORT= user-destdir - MAKE_JOBS_SAFE= no DEPENDS+= bash-[0-9]*:../../shells/bash diff --git a/parallel/openmpi/Makefile b/parallel/openmpi/Makefile index a1b64e851ed..04fe69cedbd 100644 --- a/parallel/openmpi/Makefile +++ b/parallel/openmpi/Makefile @@ -1,4 +1,4 @@ -# $NetBSD: Makefile,v 1.15 2012/06/12 23:36:30 asau Exp $ +# $NetBSD: Makefile,v 1.16 2012/09/11 20:36:17 asau Exp $ DISTNAME= openmpi-1.6 CATEGORIES= parallel @@ -12,8 +12,6 @@ COMMENT= Open source MPI-2 implementation CONFLICTS+= mpich-[0-9]* # installs bin/mpicc & other wrappers CONFLICTS+= mpich2-[0-9]* # installs bin/mpicc & other wrappers -PKG_DESTDIR_SUPPORT= user-destdir - GNU_CONFIGURE= yes USE_LANGUAGES= c c++ fortran77 USE_LIBTOOL= yes diff --git a/parallel/openpa/Makefile b/parallel/openpa/Makefile index 89e416192a4..36a493fd20e 100644 --- a/parallel/openpa/Makefile +++ b/parallel/openpa/Makefile @@ -1,4 +1,4 @@ -# $NetBSD: Makefile,v 1.2 2009/12/11 03:58:37 asau Exp $ +# $NetBSD: Makefile,v 1.3 2012/09/11 20:36:18 asau Exp $ DISTNAME= openpa-1.0.2 CATEGORIES= parallel @@ -8,8 +8,6 @@ MAINTAINER= asau@inbox.ru HOMEPAGE= http://trac.mcs.anl.gov/projects/openpa/ COMMENT= Atomic primitives for high performance software -PKG_DESTDIR_SUPPORT= user-destdir - GNU_CONFIGURE= yes TEST_TARGET= check diff --git a/parallel/p5-Parallel-Pvm/Makefile b/parallel/p5-Parallel-Pvm/Makefile index 2db4eb17d65..0bdb3d5b45c 100644 --- a/parallel/p5-Parallel-Pvm/Makefile +++ b/parallel/p5-Parallel-Pvm/Makefile @@ -1,4 +1,4 @@ -# $NetBSD: Makefile,v 1.19 2011/08/14 14:17:42 obache Exp $ +# $NetBSD: Makefile,v 1.20 2012/09/11 20:36:18 asau Exp $ # DISTNAME= Parallel-Pvm-1.4.0 @@ -13,8 +13,6 @@ HOMEPAGE= http://www.csm.ornl.gov/pvm/pvm_home.html #HOMEPAGE= http://search.cpan.org/dist/Parallel-Pvm/ COMMENT= Perl module for PVM (Parallel Virtual Machine) -PKG_DESTDIR_SUPPORT= user-destdir - PVM_ROOT?= ${LOCALBASE}/pvm3 CONFIGURE_ENV+= PVM_ROOT=${PVM_ROOT:Q} PVM_ARCH=${PVM_ARCH:Q} MAKE_ENV+= PVM_ROOT=${PVM_ROOT:Q} PVM_ARCH=${PVM_ARCH:Q} diff --git a/parallel/paexec/Makefile b/parallel/paexec/Makefile index bb7e7039580..bcb2ddcc9e1 100644 --- a/parallel/paexec/Makefile +++ b/parallel/paexec/Makefile @@ -1,4 +1,4 @@ -# $NetBSD: Makefile,v 1.8 2012/09/09 23:30:26 cheusov Exp $ +# $NetBSD: Makefile,v 1.9 2012/09/11 20:36:18 asau Exp $ # DISTNAME= paexec-0.17.0 @@ -14,8 +14,6 @@ LICENSE= mit BUILD_DEPENDS+= mk-configure>=0.20.0:../../devel/mk-configure DEPENDS+= runawk>=1.4.3:../../lang/runawk -PKG_DESTDIR_SUPPORT= user-destdir - REPLACE_INTERPRETER+= runawk REPLACE.runawk.old= /usr/bin/env runawk REPLACE.runawk.new= ${PREFIX}/bin/runawk diff --git a/parallel/parallel/Makefile b/parallel/parallel/Makefile index 670c38db937..ea67bd19cfb 100644 --- a/parallel/parallel/Makefile +++ b/parallel/parallel/Makefile @@ -1,4 +1,4 @@ -# $NetBSD: Makefile,v 1.3 2011/11/29 18:26:09 hans Exp $ +# $NetBSD: Makefile,v 1.4 2012/09/11 20:36:18 asau Exp $ # DISTNAME= parallel-20110522 @@ -11,8 +11,6 @@ HOMEPAGE= http://savannah.gnu.org/projects/parallel/ COMMENT= Build and execute shell commands in parallel LICENSE= gnu-gpl-v3 -PKG_DESTDIR_SUPPORT= user-destdir - USE_TOOLS+= perl:run pod2man pod2html REPLACE_PERL+= src/parallel src/niceload src/sem src/sem.pod src/sql diff --git a/parallel/pvm3/Makefile b/parallel/pvm3/Makefile index 6d8ec9379cf..3839ae0efcc 100644 --- a/parallel/pvm3/Makefile +++ b/parallel/pvm3/Makefile @@ -1,4 +1,4 @@ -# $NetBSD: Makefile,v 1.62 2012/02/06 06:19:18 sbd Exp $ +# $NetBSD: Makefile,v 1.63 2012/09/11 20:36:18 asau Exp $ DISTNAME= pvm3.4.6 PKGNAME= pvm-3.4.6 @@ -11,8 +11,6 @@ MAINTAINER= pkgsrc-users@NetBSD.org HOMEPAGE= http://www.csm.ornl.gov/pvm/pvm_home.html COMMENT= Parallel Virtual Machine libraries and environment -PKG_DESTDIR_SUPPORT= user-destdir - .include "../../mk/bsd.prefs.mk" BUILD_DEFS+= PVM_SSH diff --git a/parallel/sge/Makefile b/parallel/sge/Makefile index 23a7bc24707..274213a22b4 100644 --- a/parallel/sge/Makefile +++ b/parallel/sge/Makefile @@ -1,4 +1,4 @@ -# $NetBSD: Makefile,v 1.48 2012/08/21 23:49:25 marino Exp $ +# $NetBSD: Makefile,v 1.49 2012/09/11 20:36:18 asau Exp $ # DISTNAME= sge-8.0.0d @@ -12,8 +12,6 @@ HOMEPAGE= https://arc.liv.ac.uk/trac/SGE COMMENT= Son of Grid Engine distributed resource management system LICENSE= sun-iss AND 2-clause-bsd AND gnu-gpl-v2 AND gnu-lgpl-v2 -PKG_DESTDIR_SUPPORT= user-destdir - GNU_CONFIGURE= YES USE_TOOLS+= gmake csh perl:run diff --git a/parallel/slurm/Makefile b/parallel/slurm/Makefile index 61404fb7fd6..4aca27247e5 100644 --- a/parallel/slurm/Makefile +++ b/parallel/slurm/Makefile @@ -1,4 +1,4 @@ -# $NetBSD: Makefile,v 1.4 2012/07/03 22:00:41 asau Exp $ +# $NetBSD: Makefile,v 1.5 2012/09/11 20:36:18 asau Exp $ DISTNAME= slurm-2.4.1 CATEGORIES= parallel @@ -11,8 +11,6 @@ MAINTAINER= asau@inbox.ru HOMEPAGE= http://www.schedmd.com/ COMMENT= Simple Linux Utility for Resource Management -PKG_DESTDIR_SUPPORT= user-destdir - USE_LANGUAGES= c c++ GNU_CONFIGURE= yes diff --git a/parallel/threadingbuildingblocks/Makefile b/parallel/threadingbuildingblocks/Makefile index 1719185de00..d39f4d1d7f4 100644 --- a/parallel/threadingbuildingblocks/Makefile +++ b/parallel/threadingbuildingblocks/Makefile @@ -1,4 +1,4 @@ -# $NetBSD: Makefile,v 1.2 2011/09/05 20:19:52 cheusov Exp $ +# $NetBSD: Makefile,v 1.3 2012/09/11 20:36:18 asau Exp $ DISTNAME= tbb30_20110325oss_src PKGNAME= threadingbuildingblocks-3.0.6 # for "3.0 update 6" @@ -10,8 +10,6 @@ MAINTAINER= asau@inbox.ru HOMEPAGE= http://www.threadingbuildingblocks.org/ COMMENT= Threading Buildling Blocks -PKG_DESTDIR_SUPPORT= user-destdir - WRKSRC= $(WRKDIR)/$(DISTNAME:_src=) #tbb30_20101215oss USE_LANGUAGES= c c++ |