diff options
| -rw-r--r-- | math/py-pytables/Makefile | 12 | ||||
| -rw-r--r-- | math/py-pytables/PLIST | 26 | ||||
| -rw-r--r-- | math/py-pytables/distinfo | 12 | ||||
| -rw-r--r-- | math/py-pytables/patches/patch-c-blosc_blosc_blosc.c | 16 | ||||
| -rw-r--r-- | math/py-pytables/patches/patch-setup.py | 31 |
5 files changed, 51 insertions, 46 deletions
diff --git a/math/py-pytables/Makefile b/math/py-pytables/Makefile index 2941b962b73..0b2d3f320b7 100644 --- a/math/py-pytables/Makefile +++ b/math/py-pytables/Makefile @@ -1,15 +1,19 @@ -# $NetBSD: Makefile,v 1.32 2016/07/15 07:24:06 wiz Exp $ +# $NetBSD: Makefile,v 1.33 2016/08/16 02:42:48 maya Exp $ -DISTNAME= tables-3.1.1 +DISTNAME= tables-3.2.3 PKGNAME= ${PYPKGPREFIX}-py${DISTNAME} CATEGORIES= math python -MASTER_SITES= ${MASTER_SITE_SOURCEFORGE:=pytables/} +MASTER_SITES= ${MASTER_SITE_GITHUB:=PyTables/} +GITHUB_PROJECT= PyTables +GITHUB_TAG= v.${PKGVERSION_NOREV} MAINTAINER= pkgsrc-users@NetBSD.org HOMEPAGE= http://www.pytables.org/ COMMENT= Database package for large amounts of data LICENSE= modified-bsd +WRKSRC= ${WRKDIR}/${GITHUB_PROJECT}-${GITHUB_TAG} + PYSETUPBUILDARGS+= --hdf5=${BUILDLINK_PREFIX.hdf5} PYSETUPINSTALLARGS= ${PYSETUPBUILDARGS} PLIST_SUBST+= PYVERSSUFFIX=${PYVERSSUFFIX:Q} @@ -34,6 +38,6 @@ do-test: .include "../../devel/zlib/buildlink3.mk" .include "../../archivers/bzip2/buildlink3.mk" .include "../../math/py-numpy/buildlink3.mk" -BUILDLINK_API_DEPENDS.pycython+= ${PYPKGPREFIX}-cython>=0.13 +BUILDLINK_API_DEPENDS.pycython+= ${PYPKGPREFIX}-cython>=0.21 .include "../../devel/py-cython/buildlink3.mk" .include "../../mk/bsd.pkg.mk" diff --git a/math/py-pytables/PLIST b/math/py-pytables/PLIST index 28246b2d027..7ce13580a80 100644 --- a/math/py-pytables/PLIST +++ b/math/py-pytables/PLIST @@ -1,8 +1,15 @@ -@comment $NetBSD: PLIST,v 1.11 2014/01/21 16:32:42 wiz Exp $ -bin/pt2to3${PYVERSSUFFIX} -bin/ptdump${PYVERSSUFFIX} -bin/ptrepack${PYVERSSUFFIX} -${PYSITELIB}/${EGG_FILE} +@comment $NetBSD: PLIST,v 1.12 2016/08/16 02:42:48 maya Exp $ +bin/pt2to32.7 +bin/ptdump2.7 +bin/ptrepack2.7 +bin/pttree +${PYSITELIB}/${EGG_FILE}/PKG-INFO +${PYSITELIB}/${EGG_FILE}/SOURCES.txt +${PYSITELIB}/${EGG_FILE}/dependency_links.txt +${PYSITELIB}/${EGG_FILE}/entry_points.txt +${PYSITELIB}/${EGG_FILE}/not-zip-safe +${PYSITELIB}/${EGG_FILE}/requires.txt +${PYSITELIB}/${EGG_FILE}/top_level.txt ${PYSITELIB}/tables/__init__.py ${PYSITELIB}/tables/__init__.pyc ${PYSITELIB}/tables/__init__.pyo @@ -132,6 +139,9 @@ ${PYSITELIB}/tables/scripts/ptdump.pyo ${PYSITELIB}/tables/scripts/ptrepack.py ${PYSITELIB}/tables/scripts/ptrepack.pyc ${PYSITELIB}/tables/scripts/ptrepack.pyo +${PYSITELIB}/tables/scripts/pttree.py +${PYSITELIB}/tables/scripts/pttree.pyc +${PYSITELIB}/tables/scripts/pttree.pyo ${PYSITELIB}/tables/table.py ${PYSITELIB}/tables/table.pyc ${PYSITELIB}/tables/table.pyo @@ -150,6 +160,7 @@ ${PYSITELIB}/tables/tests/__init__.pyo ${PYSITELIB}/tables/tests/array_mdatom.h5 ${PYSITELIB}/tables/tests/attr-u16.h5 ${PYSITELIB}/tables/tests/blosc_bigendian.h5 +${PYSITELIB}/tables/tests/bug-idx.h5 ${PYSITELIB}/tables/tests/check_leaks.py ${PYSITELIB}/tables/tests/check_leaks.pyc ${PYSITELIB}/tables/tests/check_leaks.pyo @@ -167,6 +178,8 @@ ${PYSITELIB}/tables/tests/float.h5 ${PYSITELIB}/tables/tests/idx-std-1.x.h5 ${PYSITELIB}/tables/tests/indexes_2_0.h5 ${PYSITELIB}/tables/tests/indexes_2_1.h5 +${PYSITELIB}/tables/tests/issue_368.h5 +${PYSITELIB}/tables/tests/issue_560.h5 ${PYSITELIB}/tables/tests/matlab_file.mat ${PYSITELIB}/tables/tests/nested-type-with-gaps.h5 ${PYSITELIB}/tables/tests/non-chunked-table.h5 @@ -194,6 +207,9 @@ ${PYSITELIB}/tables/tests/test_array.pyo ${PYSITELIB}/tables/tests/test_attributes.py ${PYSITELIB}/tables/tests/test_attributes.pyc ${PYSITELIB}/tables/tests/test_attributes.pyo +${PYSITELIB}/tables/tests/test_aux.py +${PYSITELIB}/tables/tests/test_aux.pyc +${PYSITELIB}/tables/tests/test_aux.pyo ${PYSITELIB}/tables/tests/test_backcompat.py ${PYSITELIB}/tables/tests/test_backcompat.pyc ${PYSITELIB}/tables/tests/test_backcompat.pyo diff --git a/math/py-pytables/distinfo b/math/py-pytables/distinfo index 0e46318350f..9bbf1ea8453 100644 --- a/math/py-pytables/distinfo +++ b/math/py-pytables/distinfo @@ -1,7 +1,7 @@ -$NetBSD: distinfo,v 1.13 2015/11/03 23:33:42 agc Exp $ +$NetBSD: distinfo,v 1.14 2016/08/16 02:42:48 maya Exp $ -SHA1 (tables-3.1.1.tar.gz) = c1ff909112b69b38b744cf81381496173c85c8af -RMD160 (tables-3.1.1.tar.gz) = f4c4c68c931fe8d3c5817f2619e699bab6fc7f07 -SHA512 (tables-3.1.1.tar.gz) = b5b2052dd81c4748c5e26c1f61f9f92891f48335b0a553f7602ab11c9029dd673d27b91e24cac0da21a81df0c26dbcd9a438214fa58af1ae831c5f04dfa212a6 -Size (tables-3.1.1.tar.gz) = 6715786 bytes -SHA1 (patch-setup.py) = a343bbf94ab7bcc46c81c5db7ca5a9afa85e306a +SHA1 (tables-3.2.3.tar.gz) = d7a2965821f436aabcf97e2851fe857c40e71cca +RMD160 (tables-3.2.3.tar.gz) = b0eaa61390a65d4e23f0499ca64409c20fd23bae +SHA512 (tables-3.2.3.tar.gz) = 565ae648a81daa6e9eb7d8dfbecef4f0b195122dd2c60a99f89f903f7366515997c302e649441f68b20c13b0f7ccff1e97971cc16b4bd56b579a069d92247e9a +Size (tables-3.2.3.tar.gz) = 3821258 bytes +SHA1 (patch-c-blosc_blosc_blosc.c) = 53751c1242e9d2e3057bb1eef0f075f2fdd97c3f diff --git a/math/py-pytables/patches/patch-c-blosc_blosc_blosc.c b/math/py-pytables/patches/patch-c-blosc_blosc_blosc.c new file mode 100644 index 00000000000..3e5d241d28b --- /dev/null +++ b/math/py-pytables/patches/patch-c-blosc_blosc_blosc.c @@ -0,0 +1,16 @@ +$NetBSD: patch-c-blosc_blosc_blosc.c,v 1.1 2016/08/16 02:42:48 maya Exp $ + +Workaround NetBSD-7.99.35 missing C11 includes and having C11 support +PR standards/51416 + +--- c-blosc/blosc/blosc.c.orig 2016-07-03 11:46:48.000000000 +0000 ++++ c-blosc/blosc/blosc.c +@@ -59,7 +59,7 @@ + #endif + + /* If C11 is supported, use it's built-in aligned allocation. */ +-#if __STDC_VERSION__ >= 201112L ++#if 0 + #include <stdalign.h> + #endif + diff --git a/math/py-pytables/patches/patch-setup.py b/math/py-pytables/patches/patch-setup.py deleted file mode 100644 index 12c61e175f7..00000000000 --- a/math/py-pytables/patches/patch-setup.py +++ /dev/null @@ -1,31 +0,0 @@ -$NetBSD: patch-setup.py,v 1.1 2014/09/20 17:56:36 wiz Exp $ - -Fix build with cython-0.20++. - ---- setup.py.orig 2014-03-25 20:49:03.000000000 +0000 -+++ setup.py -@@ -122,21 +122,21 @@ if not has_setuptools: - - # Check if Cython is installed or not (requisite) - try: -+ from Cython import __version__ as CythonVersion - from Cython.Distutils import build_ext -- from Cython.Compiler.Main import Version - cmdclass['build_ext'] = build_ext - except ImportError: - exit_with_error( - "You need %(pkgname)s %(pkgver)s or greater to compile PyTables!" - % {'pkgname': 'Cython', 'pkgver': min_cython_version}) - --if Version.version < min_cython_version: -+if CythonVersion < min_cython_version: - exit_with_error( - "At least Cython %s is needed so as to generate extensions!" - % (min_cython_version)) - else: - print("* Found %(pkgname)s %(pkgver)s package installed." -- % {'pkgname': 'Cython', 'pkgver': Version.version}) -+ % {'pkgname': 'Cython', 'pkgver': CythonVersion}) - - VERSION = open('VERSION').read().strip() - |