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-rw-r--r--biology/azara/DESCR1
-rw-r--r--biology/azara/Makefile38
-rw-r--r--biology/azara/PLIST26
-rw-r--r--biology/azara/distinfo10
-rw-r--r--biology/azara/patches/patch-aa31
-rw-r--r--biology/azara/patches/patch-ab197
-rw-r--r--biology/azara/patches/patch-ac12
-rw-r--r--biology/azara/patches/patch-ad19
-rw-r--r--biology/azara/patches/patch-ae20
9 files changed, 0 insertions, 354 deletions
diff --git a/biology/azara/DESCR b/biology/azara/DESCR
deleted file mode 100644
index 0b662887d1e..00000000000
--- a/biology/azara/DESCR
+++ /dev/null
@@ -1 +0,0 @@
-Azara is a suite of programs to process and view NMR data.
diff --git a/biology/azara/Makefile b/biology/azara/Makefile
deleted file mode 100644
index 9b324e0777a..00000000000
--- a/biology/azara/Makefile
+++ /dev/null
@@ -1,38 +0,0 @@
-# $NetBSD: Makefile,v 1.5 2007/01/26 22:05:14 joerg Exp $
-#
-
-DISTNAME= azara-2.7-src
-PKGNAME= azara-2.7
-PKGREVISION= 2
-CATEGORIES= biology
-MASTER_SITES= ftp://www.bio.cam.ac.uk/pub/azara/
-
-MAINTAINER= mchittur@cs.nmsu.edu
-HOMEPAGE= http://www.bio.cam.ac.uk/azara/
-COMMENT= Programs to process and view NMR data
-
-WRKSRC= ${WRKDIR}/azara-2.7
-
-MAKE_FILE= makefile
-
-do-install:
-.for PROG in azara \
- bin2asc \
- combine connect contours \
- deflate \
- extract \
- float2int \
- int2float \
- look_at look_byte look_for \
- mat2par \
- par2mat peak_find peak_fit plot1 plot2 process project \
- reflate \
- slides swap \
- unblock viewer
- ${CP} ${WRKSRC}/bin/${PROG} ${PREFIX}/bin
-.endfor
-
-.include "../../graphics/glu/buildlink3.mk"
-.include "../../graphics/glut/buildlink3.mk"
-.include "../../mk/motif.buildlink3.mk"
-.include "../../mk/bsd.pkg.mk"
diff --git a/biology/azara/PLIST b/biology/azara/PLIST
deleted file mode 100644
index 1573221802e..00000000000
--- a/biology/azara/PLIST
+++ /dev/null
@@ -1,26 +0,0 @@
-@comment $NetBSD: PLIST,v 1.1.1.1 2005/11/05 01:47:41 minskim Exp $
-bin/azara
-bin/bin2asc
-bin/combine
-bin/connect
-bin/contours
-bin/deflate
-bin/extract
-bin/float2int
-bin/int2float
-bin/look_at
-bin/look_byte
-bin/look_for
-bin/mat2par
-bin/par2mat
-bin/peak_find
-bin/peak_fit
-bin/plot1
-bin/plot2
-bin/process
-bin/project
-bin/reflate
-bin/slides
-bin/swap
-bin/unblock
-bin/viewer
diff --git a/biology/azara/distinfo b/biology/azara/distinfo
deleted file mode 100644
index d7b018e4491..00000000000
--- a/biology/azara/distinfo
+++ /dev/null
@@ -1,10 +0,0 @@
-$NetBSD: distinfo,v 1.3 2006/01/04 21:57:08 joerg Exp $
-
-SHA1 (azara-2.7-src.tar.gz) = 53caa85953f700cdc4ec9ef26d2bb7d9448b77b0
-RMD160 (azara-2.7-src.tar.gz) = 2426102dbb87984f88ec1266b72d2e307484af0c
-Size (azara-2.7-src.tar.gz) = 565272 bytes
-SHA1 (patch-aa) = 1066c1e1b070020bbdd18439b27e15d359dd5e69
-SHA1 (patch-ab) = 46e512fba5b00cb36cd2b2d50db4919875124309
-SHA1 (patch-ac) = 12b37403ce7107989d2e0e5c7e9b3b6868464f5c
-SHA1 (patch-ad) = 0da330b12768124586f786c7e980d540a4414d54
-SHA1 (patch-ae) = d87b2cdcc33a423eba3a17a95cc66d8c13390e81
diff --git a/biology/azara/patches/patch-aa b/biology/azara/patches/patch-aa
deleted file mode 100644
index f6389026444..00000000000
--- a/biology/azara/patches/patch-aa
+++ /dev/null
@@ -1,31 +0,0 @@
-$NetBSD: patch-aa,v 1.1.1.1 2005/11/05 01:47:41 minskim Exp $
-
---- ENVIRONMENT.orig 2002-11-01 07:10:11.000000000 -0700
-+++ ENVIRONMENT
-@@ -40,14 +40,14 @@ XPM_FLAG = -DUSE_XPM
- XPM_LIB = -lXpm
-
- # X11 libraries
--X11_LIB = -lX11 -lPW
-+#X11_LIB = -lX11 -lPW
- # non-SGI platforms do not need PW
--#X11_LIB = -lX11
-+X11_LIB = -lX11
- # below uses shared libraries
- #X11_LIB = -lX11_s -lPW
-
- # Motif libraries
--MOTIF_LIB = -lXm -lXt
-+MOTIF_LIB = -L${X11BASE}/lib -Wl,-R${X11BASE}/lib -L${PREFIX}/lib -Wl,-R${PREFIX}/lib -lXm -lXt
- # below uses shared libraries
- #MOTIF_LIB = -lXm_s -lXt_s
-
-@@ -58,7 +58,7 @@ MOTIF_LIB = -lXm -lXt
- #GL_LIB_DIR = $(X11_LIB_DIR) -I/usr/local/mesa/lib
-
- # GL libraries
--GL_LIB = -lglut -lGLU -lGL -lXmu -lX11 -lXext
-+GL_LIB = -L${X11BASE}/lib -Wl,-R${X11BASE}/lib -L${PREFIX}/lib -Wl,-R${PREFIX}/lib -lglut -lGLU -lGL -lXmu -lXi -lX11 -lXext
-
- # set up ENDIAN_FLAG as required
- # WRITE_ENDIAN_PAR if want endianess written to par file
diff --git a/biology/azara/patches/patch-ab b/biology/azara/patches/patch-ab
deleted file mode 100644
index 8a6bb31ce55..00000000000
--- a/biology/azara/patches/patch-ab
+++ /dev/null
@@ -1,197 +0,0 @@
-$NetBSD: patch-ab,v 1.1.1.1 2005/11/05 01:47:41 minskim Exp $
-
---- help/makefile.orig 2002-11-01 05:27:27.000000000 -0700
-+++ help/makefile
-@@ -37,97 +37,97 @@ globals:
- .c.o:; $(CC) -c $(CFLAGS) $<
-
- hlp:
-- txt2hlp azara
-- txt2hlp combine
-- txt2hlp components
-- txt2hlp connect
-- txt2hlp contours
-- txt2hlp deflate
-- txt2hlp extract
-- txt2hlp peak_find
-- txt2hlp peak_fit
-- txt2hlp plot1
-- txt2hlp plot2
-- txt2hlp process
-- txt2hlp project
-- txt2hlp slides
-- txt2hlp reflate
-- txt2hlp unblock
-- txt2hlp viewer
-- txt2hlp plot2/baseline
-- txt2hlp plot2/data
-- txt2hlp plot2/extract
-- txt2hlp plot2/levels
-- txt2hlp plot2/object
-- txt2hlp plot2/output
-- txt2hlp plot2/peak
-- txt2hlp plot2/peaks
-- txt2hlp plot2/phase
-- txt2hlp plot2/property
-- txt2hlp plot2/region
-- txt2hlp plot2/rowcol
-- txt2hlp plot2/save
-- txt2hlp plot2/tracking
-- txt2hlp plot1/button
-- txt2hlp plot1/data
-- txt2hlp plot1/object
-- txt2hlp plot1/output
-- txt2hlp plot1/property
-- txt2hlp plot1/region
-- txt2hlp plot1/slider
-- txt2hlp plot1/text
-+ ./txt2hlp azara
-+ ./txt2hlp combine
-+ ./txt2hlp components
-+ ./txt2hlp connect
-+ ./txt2hlp contours
-+ ./txt2hlp deflate
-+ ./txt2hlp extract
-+ ./txt2hlp peak_find
-+ ./txt2hlp peak_fit
-+ ./txt2hlp plot1
-+ ./txt2hlp plot2
-+ ./txt2hlp process
-+ ./txt2hlp project
-+ ./txt2hlp slides
-+ ./txt2hlp reflate
-+ ./txt2hlp unblock
-+ ./txt2hlp viewer
-+ ./txt2hlp plot2/baseline
-+ ./txt2hlp plot2/data
-+ ./txt2hlp plot2/extract
-+ ./txt2hlp plot2/levels
-+ ./txt2hlp plot2/object
-+ ./txt2hlp plot2/output
-+ ./txt2hlp plot2/peak
-+ ./txt2hlp plot2/peaks
-+ ./txt2hlp plot2/phase
-+ ./txt2hlp plot2/property
-+ ./txt2hlp plot2/region
-+ ./txt2hlp plot2/rowcol
-+ ./txt2hlp plot2/save
-+ ./txt2hlp plot2/tracking
-+ ./txt2hlp plot1/button
-+ ./txt2hlp plot1/data
-+ ./txt2hlp plot1/object
-+ ./txt2hlp plot1/output
-+ ./txt2hlp plot1/property
-+ ./txt2hlp plot1/region
-+ ./txt2hlp plot1/slider
-+ ./txt2hlp plot1/text
-
- html:
-- txt2html azara
-- txt2html combine
-- txt2html components
-- txt2html connect
-- txt2html contours
-- txt2html deflate
-- txt2html extract
-- txt2html peak_find
-- txt2html peak_fit
-- txt2html plot1
-- txt2html plot2
-- txt2html process
-- txt2html project
-- txt2html slides
-- txt2html reflate
-- txt2html unblock
-- txt2html viewer
-- txt2html plot2/baseline
-- txt2html plot2/data
-- txt2html plot2/extract
-- txt2html plot2/levels
-- txt2html plot2/object
-- txt2html plot2/output
-- txt2html plot2/peak
-- txt2html plot2/peaks
-- txt2html plot2/phase
-- txt2html plot2/property
-- txt2html plot2/region
-- txt2html plot2/rowcol
-- txt2html plot2/save
-- txt2html plot2/tracking
-- txt2html plot1/button
-- txt2html plot1/data
-- txt2html plot1/object
-- txt2html plot1/output
-- txt2html plot1/property
-- txt2html plot1/region
-- txt2html plot1/slider
-- txt2html plot1/text
-- txt2html CHANGES
-- txt2html INSTALL
-- txt2html README-2.7
-- txt2html CHANGES-1.0-1
-- txt2html CHANGES-1.0-2
-- txt2html CHANGES-1.0-3
-- txt2html CHANGES-2.0-0
-- txt2html CHANGES-2.5-0
-- txt2html CHANGES-2.6-0
-- txt2html CHANGES-2.7-0
-- txt2html LICENSE
-+ ./txt2html azara
-+ ./txt2html combine
-+ ./txt2html components
-+ ./txt2html connect
-+ ./txt2html contours
-+ ./txt2html deflate
-+ ./txt2html extract
-+ ./txt2html peak_find
-+ ./txt2html peak_fit
-+ ./txt2html plot1
-+ ./txt2html plot2
-+ ./txt2html process
-+ ./txt2html project
-+ ./txt2html slides
-+ ./txt2html reflate
-+ ./txt2html unblock
-+ ./txt2html viewer
-+ ./txt2html plot2/baseline
-+ ./txt2html plot2/data
-+ ./txt2html plot2/extract
-+ ./txt2html plot2/levels
-+ ./txt2html plot2/object
-+ ./txt2html plot2/output
-+ ./txt2html plot2/peak
-+ ./txt2html plot2/peaks
-+ ./txt2html plot2/phase
-+ ./txt2html plot2/property
-+ ./txt2html plot2/region
-+ ./txt2html plot2/rowcol
-+ ./txt2html plot2/save
-+ ./txt2html plot2/tracking
-+ ./txt2html plot1/button
-+ ./txt2html plot1/data
-+ ./txt2html plot1/object
-+ ./txt2html plot1/output
-+ ./txt2html plot1/property
-+ ./txt2html plot1/region
-+ ./txt2html plot1/slider
-+ ./txt2html plot1/text
-+ ./txt2html CHANGES
-+ ./txt2html INSTALL
-+ ./txt2html README-2.7
-+ ./txt2html CHANGES-1.0-1
-+ ./txt2html CHANGES-1.0-2
-+ ./txt2html CHANGES-1.0-3
-+ ./txt2html CHANGES-2.0-0
-+ ./txt2html CHANGES-2.5-0
-+ ./txt2html CHANGES-2.6-0
-+ ./txt2html CHANGES-2.7-0
-+ ./txt2html LICENSE
-
- clean:
- rm *.o
-@@ -135,4 +135,4 @@ clean:
- realclean:
- rm *.o
- rm txt2hlp
-- rm txt2html
-+ rM Txt2html
diff --git a/biology/azara/patches/patch-ac b/biology/azara/patches/patch-ac
deleted file mode 100644
index 9464d57d9b9..00000000000
--- a/biology/azara/patches/patch-ac
+++ /dev/null
@@ -1,12 +0,0 @@
-$NetBSD: patch-ac,v 1.1 2005/11/19 17:23:47 kristerw Exp $
-
---- global/macros.h.orig 2005-11-19 18:14:27.000000000 +0100
-+++ global/macros.h 2005-11-19 18:14:34.000000000 +0100
-@@ -2,7 +2,6 @@
- #define _incl_macros
-
- #include <stdio.h>
--#include <malloc.h>
- #include <math.h>
- #include <string.h>
- #include <stdlib.h>
diff --git a/biology/azara/patches/patch-ad b/biology/azara/patches/patch-ad
deleted file mode 100644
index d850dac04d7..00000000000
--- a/biology/azara/patches/patch-ad
+++ /dev/null
@@ -1,19 +0,0 @@
-$NetBSD: patch-ad,v 1.1 2006/01/04 21:57:08 joerg Exp $
-
---- help/txt2hlp.c.orig 2006-01-04 21:49:13.000000000 +0000
-+++ help/txt2hlp.c
-@@ -26,7 +26,7 @@ static void print_line(String line, FILE
- }
- }
-
--void main(int argc, char **argv)
-+int main(int argc, char **argv)
- {
- int i, count;
- char *prefix, *ptr, *full_prefix;
-@@ -129,4 +129,5 @@ void main(int argc, char **argv)
-
- fclose(fp_in);
- fclose(fp_out);
-+ return(0);
- }
diff --git a/biology/azara/patches/patch-ae b/biology/azara/patches/patch-ae
deleted file mode 100644
index 5e8b642a2ae..00000000000
--- a/biology/azara/patches/patch-ae
+++ /dev/null
@@ -1,20 +0,0 @@
-$NetBSD: patch-ae,v 1.1 2006/01/04 21:57:09 joerg Exp $
-
---- help/txt2html.c.orig 2006-01-04 21:51:17.000000000 +0000
-+++ help/txt2html.c
-@@ -190,7 +190,7 @@ static void print_line(String line, FILE
- fprintf(fp, "\n");
- }
-
--void main(int argc, char **argv)
-+int main(int argc, char **argv)
- {
- char *prefix, *name, *ptr;
- Line input_file, output_file, line, module, error_msg;
-@@ -248,4 +248,6 @@ void main(int argc, char **argv)
-
- fclose(fp_in);
- fclose(fp_out);
-+
-+ return(0);
- }
generated by cgit v1.2.3 (git 2.39.1) at 2024-07-28 00:33:30 +0000