diff options
Diffstat (limited to 'biology/bwa/patches/patch-Makefile')
| -rw-r--r-- | biology/bwa/patches/patch-Makefile | 24 |
1 files changed, 24 insertions, 0 deletions
diff --git a/biology/bwa/patches/patch-Makefile b/biology/bwa/patches/patch-Makefile new file mode 100644 index 00000000000..beec4b03f6e --- /dev/null +++ b/biology/bwa/patches/patch-Makefile @@ -0,0 +1,24 @@ +$NetBSD: patch-Makefile,v 1.1 2015/12/12 16:56:04 wiedi Exp $ + +Don't overwrite pkgsrc CC and CFLAGS + +--- Makefile.orig 2014-05-19 13:11:41.000000000 +0000 ++++ Makefile +@@ -1,6 +1,6 @@ +-CC= gcc ++#CC= gcc + #CC= clang --analyze +-CFLAGS= -g -Wall -Wno-unused-function -O2 ++#CFLAGS= -g -Wall -Wno-unused-function -O2 + WRAP_MALLOC=-DUSE_MALLOC_WRAPPERS + AR= ar + DFLAGS= -DHAVE_PTHREAD $(WRAP_MALLOC) +@@ -11,7 +11,7 @@ AOBJS= QSufSort.o bwt_gen.o bwase.o bwa + bwtsw2_chain.o fastmap.o bwtsw2_pair.o + PROG= bwa + INCLUDES= +-LIBS= -lm -lz -lpthread ++LIBS= -lm -lz -lpthread $(LDFLAGS) + SUBDIRS= . + + .SUFFIXES:.c .o .cc |