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-HMMER is an implementation of profile HMM methods for sensitive database
-searches using multiple sequence alignments as queries. HMMER takes
-multiple sequence alignment as input and builds statistical model
-called "Hidden Markov Model" which can be used as a query into a
-sequence database to find and/or align additional homologues of the
+HMMER is an implementation of profile HMM methods for sensitive database
+searches using multiple sequence alignments as queries. HMMER takes
+multiple sequence alignment as input and builds statistical model
+called "Hidden Markov Model" which can be used as a query into a
+sequence database to find and/or align additional homologues of the
sequence family.