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Diffstat (limited to 'biology/kallisto/Makefile')
| -rw-r--r-- | biology/kallisto/Makefile | 38 |
1 files changed, 38 insertions, 0 deletions
diff --git a/biology/kallisto/Makefile b/biology/kallisto/Makefile new file mode 100644 index 00000000000..86fc101cb41 --- /dev/null +++ b/biology/kallisto/Makefile @@ -0,0 +1,38 @@ +# $NetBSD: Makefile,v 1.1 2018/12/21 19:00:56 bacon Exp $ + +DISTNAME= kallisto-${PV} +CATEGORIES= biology +MASTER_SITES= ${MASTER_SITE_GITHUB:=pachterlab/} +GITHUB_TAG= v${PV} + +MAINTAINER= bacon@NetBSD.org +HOMEPAGE= https://pachterlab.github.io/kallisto/ +COMMENT= Quantify abundances of transcripts from RNA-Seq data +LICENSE= 2-clause-bsd + +USE_LANGUAGES= c c++ +USE_TOOLS+= pax +USE_CMAKE= yes + +SUBST_CLASSES+= test +SUBST_STAGE.test= post-build +SUBST_FILES.test= kallisto-test +SUBST_SED.test= -e 's|/usr/local/share/kallisto|${DATADIR}|g' + +PV= 0.45.0 +DATADIR= ${PREFIX}/share/kallisto + +INSTALLATION_DIRS= bin ${DATADIR} + +post-extract: + ${CP} ${FILESDIR}/kallisto-test ${WRKSRC} + +post-install: + ${INSTALL_SCRIPT} ${WRKSRC}/kallisto-test ${DESTDIR}${PREFIX}/bin + cd ${WRKSRC} && pax -rw test ${DESTDIR}${DATADIR} + +.include "../../biology/htslib/buildlink3.mk" +.include "../../devel/hdf5/buildlink3.mk" +.include "../../archivers/szip/buildlink3.mk" +.include "../../devel/zlib/buildlink3.mk" +.include "../../mk/bsd.pkg.mk" |