diff options
Diffstat (limited to 'biology/mummer/Makefile')
| -rw-r--r-- | biology/mummer/Makefile | 64 |
1 files changed, 11 insertions, 53 deletions
diff --git a/biology/mummer/Makefile b/biology/mummer/Makefile index fb7a8d110a2..97281c2c9c3 100644 --- a/biology/mummer/Makefile +++ b/biology/mummer/Makefile @@ -1,9 +1,8 @@ -# $NetBSD: Makefile,v 1.14 2006/12/06 16:52:20 joerg Exp $ +# $NetBSD: Makefile,v 1.15 2007/01/18 19:13:10 rillig Exp $ # -DISTNAME= MUMmer3.18 -PKGNAME= mummer-3.18 -PKGREVISION= 3 +DISTNAME= MUMmer3.19 +PKGNAME= mummer-3.19 CATEGORIES= biology MASTER_SITES= ${MASTER_SITE_SOURCEFORGE:=mummer/} @@ -18,61 +17,20 @@ USE_LANGUAGES= c c++ MAKE_ENV+= SH=${SH:Q} MAKE_ENV+= PERL=${PERL5:Q} MAKE_ENV+= CSH=${TOOLS_PATH.csh:Q} -INSTALLATION_DIRS= bin +INSTALLATION_DIRS= bin share/doc/mummer share/mummer do-install: -.for PROGRAM in annotate combineMUMs delta-filter gaps mgaps mummer \ +.for p in annotate combineMUMs delta-filter gaps mgaps mummer \ repeat-match show-aligns show-coords show-snps show-tiling - ${INSTALL_PROGRAM} ${WRKSRC}/${PROGRAM} ${PREFIX}/bin + ${INSTALL_PROGRAM} ${WRKSRC}/${p} ${PREFIX}/bin .endfor -.for PROGRAM in postnuc postpro prenuc prepro - ${INSTALL_PROGRAM} ${WRKSRC}/aux_bin/${PROGRAM} ${PREFIX}/bin +.for p in postnuc postpro prenuc prepro + ${INSTALL_PROGRAM} ${WRKSRC}/aux_bin/${p} ${PREFIX}/bin .endfor - ${INSTALL_DATA_DIR} ${PREFIX}/share/mummer -.for SCRIPT in run-mummer1 run-mummer3 nucmer promer exact-tandems \ +.for f in run-mummer1 run-mummer3 nucmer promer exact-tandems \ mapview mummerplot nucmer2xfig - ${INSTALL_SCRIPT} ${WRKSRC}/${SCRIPT} ${PREFIX}/share/mummer -.endfor - ${INSTALL_DATA_DIR} ${PREFIX}/share/doc/html/mummer -.for HTML in MUMmer.pdf MUMmer2.pdf MUMmer3.pdf XFiles.pdf \ - applications.html compare.html index.html logo.gif \ - mummer-help.gif mummer-users.gif - ${INSTALL_DATA} ${WRKSRC}/docs/web/${HTML} \ - ${PREFIX}/share/doc/html/mummer -.endfor - ${INSTALL_DATA_DIR} ${PREFIX}/share/doc/html/mummer/examples -.for HTML in dotplot.gif examples_logo.gif index.html mapplot.gif \ - mapview_fig.jpg mummer_ps.jpg - ${INSTALL_DATA} ${WRKSRC}/docs/web/examples/${HTML} \ - ${PREFIX}/share/doc/html/mummer/examples -.endfor - ${INSTALL_DATA_DIR} ${PREFIX}/share/doc/html/mummer/examples/data -.for DATA in B_anthracis_Mslice.fasta B_anthracis_contigs.fasta \ - D_melanogaster_2Rslice.cds D_melanogaster_2Rslice.fasta \ - D_melanogaster_2Rslice.utr D_pseudoobscura_contigs.fasta \ - H_pylori26695_Bslice.fasta H_pylori26695_Eslice.fasta \ - H_pyloriJ99_Bslice.fasta H_pyloriJ99_Eslice.fasta README \ - mapview_0.fig mapview_0.pdf mummer.fplot mummer.gp mummer.mums \ - mummer.ps mummer.rplot mummer1.align mummer1.errorsgaps \ - mummer1.gaps mummer1.out mummer3.align mummer3.errorsgaps \ - mummer3.gaps mummer3.out nucmer.cluster nucmer.coords \ - nucmer.delta nucmer.snps nucmer.tiling promer.aligns \ - promer.cluster promer.coords promer.delta - ${INSTALL_DATA} ${WRKSRC}/docs/web/examples/data/${DATA} \ - ${PREFIX}/share/doc/html/mummer/examples/data -.endfor - ${INSTALL_DATA_DIR} ${PREFIX}/share/doc/html/mummer/manual -.for HTML in covplot.gif dotplot.gif gaps.gif index.html \ - manual_logo.gif mgaps.gif multiplota.gif multiplotb.gif \ - nuc_proex.gif nucex.gif osi.gif pro_proex.gif - ${INSTALL_DATA} ${WRKSRC}/docs/web/manual/${HTML} \ - ${PREFIX}/share/doc/html/mummer/manual -.endfor - ${INSTALL_DATA_DIR} ${PREFIX}/share/doc/mummer -.for DOC in mapview.README maxmat3man.tex maxmat3src.pdf nucmer.README \ - optionman.sty promer.README run-mummer1.README run-mummer3.README \ - skaff.sty - ${INSTALL_DATA} ${WRKSRC}/docs/${DOC} ${PREFIX}/share/doc/mummer + ${INSTALL_SCRIPT} ${WRKSRC}/${f} ${PREFIX}/share/mummer .endfor + cd ${WRKSRC}/docs && pax -wr -s ',^Makefile$$,,' * ${PREFIX}/share/doc/mummer .include "../../mk/bsd.pkg.mk" |