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Diffstat (limited to 'biology/mummer/Makefile')
| -rw-r--r-- | biology/mummer/Makefile | 47 |
1 files changed, 47 insertions, 0 deletions
diff --git a/biology/mummer/Makefile b/biology/mummer/Makefile new file mode 100644 index 00000000000..af83ff789c7 --- /dev/null +++ b/biology/mummer/Makefile @@ -0,0 +1,47 @@ +# $NetBSD: Makefile,v 1.1.1.1 2003/09/27 22:24:56 jschauma Exp $ +# + +DISTNAME= MUMmer3.04 +PKGNAME= mummer-3.04 +WRKSRC= ${WRKDIR}/${DISTNAME} +CATEGORIES= biology +MASTER_SITES= ftp://ftp.tigr.org/pub/software/MUMmer/ + +MAINTAINER= hdp@cs.nmsu.edu +HOMEPAGE= http://www.tigr.org/software/mummer/ +COMMENT= System for aligning whole genome sequences + +USE_BUILDLINK2= YES +USE_GNU_TOOLS+= make + +MAKE_ENV+= SH="${SH}" + +do-install: +.for PROGRAM in annotate combineMUMs gaps mgaps mummer repeat-match \ + show-aligns show-coords show-tiling + ${INSTALL_PROGRAM} ${WRKSRC}/${PROGRAM} ${PREFIX}/bin +.endfor +.for PROGRAM in postnuc postpro prenuc prepro + ${INSTALL_PROGRAM} ${WRKSRC}/aux_bin/${PROGRAM} ${PREFIX}/bin +.endfor + ${INSTALL_DATA_DIR} ${PREFIX}/share/mummer +.for SCRIPT in run-mummer1 run-mummer3 nucmer promer exact-tandems \ + mummerplot nucmer2xfig + ${INSTALL_SCRIPT} ${WRKSRC}/${SCRIPT} ${PREFIX}/share/mummer +.endfor + ${INSTALL_DATA_DIR} ${PREFIX}/share/doc/html/mummer +.for HTML in covplot.gif dotplot.gif email.jpg gaps.gif index.html \ + manual_logo.gif mgaps.gif nuc_proex.gif nucex.gif osi.gif \ + pro_proex.gif + ${INSTALL_DATA} ${WRKSRC}/docs/htmlmanual/${HTML} \ + ${PREFIX}/share/doc/html/mummer +.endfor + ${INSTALL_DATA_DIR} ${PREFIX}/share/doc/mummer +.for DOC in maxmat3man.pdf maxmat3man.tex maxmat3src.pdf nucmer.README \ + optionman.sty promer.README run-mummer1.README run-mummer3.README \ + skaff.sty + ${INSTALL_DATA} ${WRKSRC}/docs/${DOC} ${PREFIX}/share/doc/mummer +.endfor + +.include "../../lang/perl5/buildlink2.mk" +.include "../../mk/bsd.pkg.mk" |