diff options
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/profit/DESCR | 6 | ||||
| -rw-r--r-- | biology/profit/Makefile | 28 | ||||
| -rw-r--r-- | biology/profit/PLIST | 51 | ||||
| -rw-r--r-- | biology/profit/distinfo | 5 | ||||
| -rw-r--r-- | biology/profit/patches/patch-aa | 29 |
5 files changed, 119 insertions, 0 deletions
diff --git a/biology/profit/DESCR b/biology/profit/DESCR new file mode 100644 index 00000000000..6614adffd68 --- /dev/null +++ b/biology/profit/DESCR @@ -0,0 +1,6 @@ +ProFit (pronounced Pro-Fit, not profit!) is designed to be the ultimate +program for performing least squares fits of two protein structures. It +performs a very simple and basic function, but allows as much flexibility as +possible in performing this procedure. Thus one can specify subsets of atoms +to be considered, specify zones to be fitted by number, sequence, or by +sequence alignment. diff --git a/biology/profit/Makefile b/biology/profit/Makefile new file mode 100644 index 00000000000..08ac873321a --- /dev/null +++ b/biology/profit/Makefile @@ -0,0 +1,28 @@ +# $NetBSD: Makefile,v 1.1.1.1 2003/09/27 23:18:26 jschauma Exp $ +# + +DISTNAME= profit +PKGNAME= profit-2.2 +WRKSRC= ${WRKDIR}/ProFitV2.2/src +CATEGORIES= biology +MASTER_SITES= http://www.rubic.rdg.ac.uk/~andrew/bioinf.org/software/profit/235216/ + +MAINTAINER= hdp@cs.nmsu.edu +HOMEPAGE= http://www.rubic.rdg.ac.uk/~andrew/bioinf.org/software/profit/index.html +COMMENT= Performs least squares fits of two protein structures + +ALL_TARGET= ${DISTNAME} +USE_BUILDLINK2= YES + +do-install: + ${INSTALL_PROGRAM} ${WRKSRC}/profit ${PREFIX}/bin + ${INSTALL_DATA_DIR} ${PREFIX}/share/doc/profit +.for sufx in dvi ps tex + ${INSTALL_DATA} ${WRKSRC}/../doc/ProFit.${sufx} \ + ${PREFIX}/share/doc/profit +.endfor + ${INSTALL_DATA_DIR} ${PREFIX}/share/doc/html/profit + cd ${WRKSRC}/../doc/ProFit/ && \ + ${PAX} -rw . ${PREFIX}/share/doc/html/profit/ + +.include "../../mk/bsd.pkg.mk" diff --git a/biology/profit/PLIST b/biology/profit/PLIST new file mode 100644 index 00000000000..e0e1b1507a2 --- /dev/null +++ b/biology/profit/PLIST @@ -0,0 +1,51 @@ +@comment $NetBSD: PLIST,v 1.1.1.1 2003/09/27 23:18:27 jschauma Exp $ +bin/profit +share/doc/html/profit/IMG_PARAMS.db +share/doc/html/profit/ProFit.css +share/doc/html/profit/ProFit.html +share/doc/html/profit/images.aux +share/doc/html/profit/images.log +share/doc/html/profit/images.pl +share/doc/html/profit/images.tex +share/doc/html/profit/img1.gif +share/doc/html/profit/img2.gif +share/doc/html/profit/img3.gif +share/doc/html/profit/img4.gif +share/doc/html/profit/index.html +share/doc/html/profit/internals.pl +share/doc/html/profit/l2h32434/img1.gif +share/doc/html/profit/l2h32434/img2.gif +share/doc/html/profit/l2h32434/img3.gif +share/doc/html/profit/l2h32434/img4.gif +share/doc/html/profit/labels.pl +share/doc/html/profit/node1.html +share/doc/html/profit/node10.html +share/doc/html/profit/node11.html +share/doc/html/profit/node12.html +share/doc/html/profit/node13.html +share/doc/html/profit/node14.html +share/doc/html/profit/node15.html +share/doc/html/profit/node16.html +share/doc/html/profit/node17.html +share/doc/html/profit/node18.html +share/doc/html/profit/node19.html +share/doc/html/profit/node2.html +share/doc/html/profit/node20.html +share/doc/html/profit/node21.html +share/doc/html/profit/node22.html +share/doc/html/profit/node23.html +share/doc/html/profit/node24.html +share/doc/html/profit/node25.html +share/doc/html/profit/node3.html +share/doc/html/profit/node4.html +share/doc/html/profit/node5.html +share/doc/html/profit/node6.html +share/doc/html/profit/node7.html +share/doc/html/profit/node8.html +share/doc/html/profit/node9.html +share/doc/profit/ProFit.dvi +share/doc/profit/ProFit.ps +share/doc/profit/ProFit.tex +@dirrm share/doc/profit +@dirrm share/doc/html/profit/l2h32434 +@dirrm share/doc/html/profit diff --git a/biology/profit/distinfo b/biology/profit/distinfo new file mode 100644 index 00000000000..7ae7455e987 --- /dev/null +++ b/biology/profit/distinfo @@ -0,0 +1,5 @@ +$NetBSD: distinfo,v 1.1.1.1 2003/09/27 23:18:27 jschauma Exp $ + +SHA1 (profit.tar.gz) = ddf74ebea7e855f5f3319fe0ca64d8a1672a7562 +Size (profit.tar.gz) = 242960 bytes +SHA1 (patch-aa) = 3c2f745109183b38ac56799e3576997f931c93b3 diff --git a/biology/profit/patches/patch-aa b/biology/profit/patches/patch-aa new file mode 100644 index 00000000000..ed4347a0954 --- /dev/null +++ b/biology/profit/patches/patch-aa @@ -0,0 +1,29 @@ +$NetBSD: patch-aa,v 1.1.1.1 2003/09/27 23:18:27 jschauma Exp $ + +--- Makefile.orig 2002-08-06 07:56:26.000000000 -0400 ++++ Makefile 2003-09-27 19:11:59.000000000 -0400 +@@ -7,7 +7,7 @@ + # + # To allow decompression of gzipped PDB files on the fly, change the + # COPT line to +-COPT = -DGUNZIP_SUPPORT -g ++COPT = -DGUNZIP_SUPPORT + # COPT = + # + LINK1 = +@@ -29,11 +29,13 @@ + bioplib/LegalAtomSpec.o bioplib/GetPDBChainLabels.o bioplib/DupePDB.o \ + bioplib/TranslatePDB.o bioplib/AtomNameMatch.o bioplib/chindex.o + ++all: profit ++ + profit : $(OFILES) $(LFILES) +- $(CC) -g -o profit $(OFILES) $(LFILES) $(XMAS) -lm $(LINK2) $(XMASLIB) ++ $(CC) -o profit $(OFILES) ${LDFLAGS} $(LFILES) $(XMAS) -lm $(LINK2) $(XMASLIB) + + .c.o : $(IFILES) +- $(CC) $(COPT) -o $@ -c $< ++ $(CC) $(COPT) ${CFLAGS} -o $@ -c $< + + clean : + /bin/rm $(OFILES) $(LFILES) |