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All checksums have been double-checked against existing RMD160 and
SHA512 hashes
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The canonical form [1] of an R package Makefile includes the
following:
- The first stanza includes R_PKGNAME, R_PKGVER, PKGREVISION (as
needed), and CATEGORIES.
- HOMEPAGE is not present but defined in math/R/Makefile.extension to
refer to the CRAN web page describing the package. Other relevant
web pages are often linked from there via the URL field.
This updates all current R packages to this form, which will make
regular updates _much_ easier, especially using pkgtools/R2pkg.
[1] http://mail-index.netbsd.org/tech-pkg/2019/08/02/msg021711.html
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Update to the canonical form of an R package and fix the LICENSE
field.
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Each R package should include ../../math/R/Makefile.extension, which also
defines MASTER_SITES. Consequently, it is redundant for the individual
packages to do the same. Package-specific definitions also prevent
redefining MASTER_SITES in a single common place.
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Upstream changes:
# 2014-09-21 - Version 2.3.1
- Fixed message "Warning in formatC(Signif) : class of 'x' was discarded"
- Fixed problem looking up objects in Sweave. R Code inside
Sweave files is now evaluated in .GlobalEnv, again, as
before version 2.3.0.
# 2014-09-06 - Version 2.3
- API BREAK: Make package conform to new CRAN policies.
- .HTML.file is no longer stored in the global environment:
use HTMLSetFile() and HTMLGetFile() instead of modifying it directly.
- .HTMLenv is no longer stored in the global environment:
it should never have been accessed directly in the first place.
- fix() is no longer replaced during HTMLStart()/HTMLStop() sessions.
- Remove obsolete handling of 'date' class from package survival.
- Remove obsolete support for old format of objects from the rpart package
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Problems found locating distfiles:
Package dfftpack: missing distfile dfftpack-20001209.tar.gz
Package eispack: missing distfile eispack-20001130.tar.gz
Package fftpack: missing distfile fftpack-20001130.tar.gz
Package linpack: missing distfile linpack-20010510.tar.gz
Package minpack: missing distfile minpack-20001130.tar.gz
Package odepack: missing distfile odepack-20001130.tar.gz
Package py-networkx: missing distfile networkx-1.10.tar.gz
Package py-sympy: missing distfile sympy-0.7.6.1.tar.gz
Package quadpack: missing distfile quadpack-20001130.tar.gz
Otherwise, existing SHA1 digests verified and found to be the same on
the machine holding the existing distfiles (morden). All existing
SHA1 digests retained for now as an audit trail.
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# 2008-05-23 - Version 1.59
- Corrected call of unexported function from
Sweave.R (utils package) in RweaveHTMLWritedoc.
- Corrected explicit call of S3Method print from
package xtable.
- Corrected explicit call of S3Method from package
nnet.
- Corrected explicit call of isInitialized from
nlme package.
- Corrected explicit call of volume from
cluster package.
- Corrected explicit calls of imp.moments
from boot package.
- Corrected explicit calls of splineOrder and
splineKnots from splines package.
- Corrected explicit call of date.ddmmmyy from
survival package.
- Fixed rpart HTML S3 method to include tree.depth
function defined internally, as rpart package is not
exporting it anymore.
- Fixed .HTML.file warning of no visible bindings
in almost every function of the package.
- Fixed bug in HTML.data.frame outputing invalid
code (missing opening <tr>) when row.names was
set to FALSE. As patch submited by Michael Irskens and
also reported by Rik Schoemaker.
- Fixed bug in HTML.matrix, opening of <tbody>
wasn't being carried. Pending the fixing of
excess of </tr>'s.
- Fixed miscelaneous bugs in CSS files.
# 2006-09-28 - Version 1.58
- Fixed bug in HTMLcore.R (unintended \ interpolation)
- Fixed bug in HTMLfi() call inside HTML.summary.lm,
which made R CMD check fail on Windows.
- Uniformization of capitalization of HTML tags
(to lowercase), in conformity with the
XHTML 1.0 standard.
- Updated HTML.data.frame to include row.names
option, as contributed by Tobias Verbeke on
2006-05-27.
# 2006-07-04 - Version 1.57
- Added the HTML2clip wrapper, suggested by Gabor
Gronthendieck.
- Miscelaneous fixes to documentation (contributed
by Tobias Verbeke)
- Cleaning up of man directory of spurious files as
suggested by Kurt Honik
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can handle packages having no PLIST files.
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Patch provided by Sergey Svishchev in private mail.
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Includes HTML function and methods to write in an HTML output.
Thus, making HTML reports is easy. Includes a function that allows
redirection on the fly, which appears to be very usefull for
teaching purpose, as the student can keep a copy of the produced
output to keep all that he/she did during the course
Package comes with a vignette describing how to write HTML reports
for statistical analysis. Finally, a driver for Sweave allows to parse
HTML flat files containing R code and to automatically write the
corresponding outputs (tables and graphs).
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