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0.19.3
Bugs Fixed
Revert unintentional change to default multichannel behavior introduced in v0.19.0 for skimage.restoration.cycle_spin (now defaults to single channel again)
Fix corner case with an optimal angle of 0 degrees in hough_line_peaks
Fixed the gallery example involving registration with log-polar transformations
Update test suite for compatibility with the most recent tifffile release.
warp/rotate: fixed a bug with clipping when cval is not in the input range
Fix computation of histogram bins for multichannel integer-valued images
General Maintenance
Update skimage.future.manual_polygon_segmentation to work with Matplotlib 3.5.
Update skimage.io.imread to avoid warnings when using imageio>=2.16.2.
Now compatible with Pillow >= 9.1 (palette may contain <256 entries)
Added support for NumPy 1.23
Pull Requests Included
Backport PR #6306 on branch v0.19.x (Fix for error in 'Using Polar and Log-Polar Transformations for Registration') (#6312)
Backport PR #6271 on branch v0.19.x (hough_line_peaks fix for corner case with optimal angle=0) (#6313)
Backport PR #6261 on branch v0.19.x (Ignore sparse matrix deprecation warning) (#6316)
backport PR 6328: Fix issue with newer versions of matplotlib in manual segmentation (#6334)
Backport PR #6343 on branch v0.19.x (avoid warnings about change to v3 API from imageio) (#6344)
Backport PR #6355 on branch v0.19.x (remove use of deprecated kwargs from test_tifffile_kwarg_passthrough) (#6357)
Backport PR #6352 on branch v0.19.x (Fix channel_axis default for cycle_spin) (#6358)
Backport PR #6348 on branch v0.19.x (Fix smoothed image computation when mask is None in canny) (#6359)
Backport PR #6361 on branch v0.19.x (Document support for Path objects in io functions) (#6363)
Backport PR #6400 on branch v0.19.x (Add support for NumPy 1.23) (#6403)
Backport PR #6335 on branch v0.19.x (warp/rotate: fixed a bug with clipping when cval is not in the input range) (#6411)
Backport PR #6413 on branch v0.19.x (Fix computation of histogram bins for multichannel integer-valued images) (#6414)
0.19.2
Pull Requests Included
fix mistake in tests.yml made during backport (gh-6129)
Backport PR #6145 on branch v0.19.x (Fix channel_axis handling in pyramid_gaussian and pyramid_laplace) (gh-6155)
Backport PR #6130 on branch v0.19.x (bump deprecated Azure windows environment) (gh-6131)
Backport PR #6148 on branch v0.19.x (deprecate n_iter_max (should be max_num_iter)) (gh-6156)
Backport PR #6152 on branch v0.19.x (specify python version used by mybinder.org for gallery demos) (gh-6157)
Backport PR #6139 on branch v0.19.x (fix phase_cross_correlation typo) (gh-6158)
Backport PR #6133 on branch v0.19.x (Update user warning message for viewer module.) (gh-6159)
Backport PR #6169 on branch v0.19.x (Fix unintended change to output dtype of match_histograms) (gh-6172)
Backport PR #6184 on branch v0.19.x (Fix SIFT wrong octave indices + typo) (gh-6186)
Backport PR #6191 on branch v0.19.x (Fix issue6190 - inconsistent default parameters in pyramids.py) (gh-6193)
Backport PR #6207 on branch v0.19.x (Always set params to nan when ProjectiveTransform.estimate fails) (gh-6210)
Backport PR #5262 on branch v0.19.x (Add textbook-like tutorial on measuring fluorescence at nuclear envelope.) (gh-6213)
Backport PR #6087 on branch v0.19.x (Add two datasets for use in upcoming scientific tutorials.) (gh-6215)
Backport PR #6214 on branch v0.19.x (EuclideanTransform.estimate should return False when NaNs are present) (gh-6221)
Backport PR #6219 on branch v0.19.x (Allow the output_shape argument to be any iterable for resize and resize_local_mean) (gh-6222)
Backport PR #6223 on branch v0.19.x (Update filename in testing instructions.) (gh-6225)
Backport PR #6231 on branch v0.19.x (Update imports/refs from deprecated scipy.ndimage.filters namespace) (gh-6233)
Backport PR #6229 on branch v0.19.x (Remove redundant testing on Appveyor) (gh-6234)
Backport PR #6183 on branch v0.19.x (Fix decorators warnings stacklevel) (gh-6238)
Backport PR #6239 on branch v0.19.x (DOC: fix SciPy intersphinx) (gh-6241)
Backport PR #6232 on branch v0.19.x (Include Cython sources via package_data) (gh-6244)
Backport PR #6227 on branch v0.19.x (Fix calculation of Z normal in marching cubes) (gh-6245)
Backport PR #6242 on branch v0.19.x (Fix bug in SLIC superpixels with enforce_connectivity=True and start_label > 0) (gh-6246)
Backport PR #6211 on branch v0.19.x (PiecewiseAffineTransform.estimate return should reflect underlying transforms) gh-6247
update MacOS libomp installation in wheel building script (gh-6249)
0.19.3
Bugs Fixed
Revert unintentional change to default multichannel behavior introduced in v0.19.0 for skimage.restoration.cycle_spin (now defaults to single channel again)
Fix corner case with an optimal angle of 0 degrees in hough_line_peaks
Fixed the gallery example involving registration with log-polar transformations
Update test suite for compatibility with the most recent tifffile release.
warp/rotate: fixed a bug with clipping when cval is not in the input range
Fix computation of histogram bins for multichannel integer-valued images
General Maintenance
Update skimage.future.manual_polygon_segmentation to work with Matplotlib 3.5.
Update skimage.io.imread to avoid warnings when using imageio>=2.16.2.
Now compatible with Pillow >= 9.1 (palette may contain <256 entries)
Added support for NumPy 1.23
Pull Requests Included
Backport PR #6306 on branch v0.19.x (Fix for error in 'Using Polar and Log-Polar Transformations for Registration') (#6312)
Backport PR #6271 on branch v0.19.x (hough_line_peaks fix for corner case with optimal angle=0) (#6313)
Backport PR #6261 on branch v0.19.x (Ignore sparse matrix deprecation warning) (#6316)
backport PR 6328: Fix issue with newer versions of matplotlib in manual segmentation (#6334)
Backport PR #6343 on branch v0.19.x (avoid warnings about change to v3 API from imageio) (#6344)
Backport PR #6355 on branch v0.19.x (remove use of deprecated kwargs from test_tifffile_kwarg_passthrough) (#6357)
Backport PR #6352 on branch v0.19.x (Fix channel_axis default for cycle_spin) (#6358)
Backport PR #6348 on branch v0.19.x (Fix smoothed image computation when mask is None in canny) (#6359)
Backport PR #6361 on branch v0.19.x (Document support for Path objects in io functions) (#6363)
Backport PR #6400 on branch v0.19.x (Add support for NumPy 1.23) (#6403)
Backport PR #6335 on branch v0.19.x (warp/rotate: fixed a bug with clipping when cval is not in the input range) (#6411)
Backport PR #6413 on branch v0.19.x (Fix computation of histogram bins for multichannel integer-valued images) (#6414)
0.19.2
Pull Requests Included
fix mistake in tests.yml made during backport (gh-6129)
Backport PR #6145 on branch v0.19.x (Fix channel_axis handling in pyramid_gaussian and pyramid_laplace) (gh-6155)
Backport PR #6130 on branch v0.19.x (bump deprecated Azure windows environment) (gh-6131)
Backport PR #6148 on branch v0.19.x (deprecate n_iter_max (should be max_num_iter)) (gh-6156)
Backport PR #6152 on branch v0.19.x (specify python version used by mybinder.org for gallery demos) (gh-6157)
Backport PR #6139 on branch v0.19.x (fix phase_cross_correlation typo) (gh-6158)
Backport PR #6133 on branch v0.19.x (Update user warning message for viewer module.) (gh-6159)
Backport PR #6169 on branch v0.19.x (Fix unintended change to output dtype of match_histograms) (gh-6172)
Backport PR #6184 on branch v0.19.x (Fix SIFT wrong octave indices + typo) (gh-6186)
Backport PR #6191 on branch v0.19.x (Fix issue6190 - inconsistent default parameters in pyramids.py) (gh-6193)
Backport PR #6207 on branch v0.19.x (Always set params to nan when ProjectiveTransform.estimate fails) (gh-6210)
Backport PR #5262 on branch v0.19.x (Add textbook-like tutorial on measuring fluorescence at nuclear envelope.) (gh-6213)
Backport PR #6087 on branch v0.19.x (Add two datasets for use in upcoming scientific tutorials.) (gh-6215)
Backport PR #6214 on branch v0.19.x (EuclideanTransform.estimate should return False when NaNs are present) (gh-6221)
Backport PR #6219 on branch v0.19.x (Allow the output_shape argument to be any iterable for resize and resize_local_mean) (gh-6222)
Backport PR #6223 on branch v0.19.x (Update filename in testing instructions.) (gh-6225)
Backport PR #6231 on branch v0.19.x (Update imports/refs from deprecated scipy.ndimage.filters namespace) (gh-6233)
Backport PR #6229 on branch v0.19.x (Remove redundant testing on Appveyor) (gh-6234)
Backport PR #6183 on branch v0.19.x (Fix decorators warnings stacklevel) (gh-6238)
Backport PR #6239 on branch v0.19.x (DOC: fix SciPy intersphinx) (gh-6241)
Backport PR #6232 on branch v0.19.x (Include Cython sources via package_data) (gh-6244)
Backport PR #6227 on branch v0.19.x (Fix calculation of Z normal in marching cubes) (gh-6245)
Backport PR #6242 on branch v0.19.x (Fix bug in SLIC superpixels with enforce_connectivity=True and start_label > 0) (gh-6246)
Backport PR #6211 on branch v0.19.x (PiecewiseAffineTransform.estimate return should reflect underlying transforms) gh-6247
update MacOS libomp installation in wheel building script (gh-6249)
0.19.3
Bugs Fixed
Revert unintentional change to default multichannel behavior introduced in v0.19.0 for skimage.restoration.cycle_spin (now defaults to single channel again)
Fix corner case with an optimal angle of 0 degrees in hough_line_peaks
Fixed the gallery example involving registration with log-polar transformations
Update test suite for compatibility with the most recent tifffile release.
warp/rotate: fixed a bug with clipping when cval is not in the input range
Fix computation of histogram bins for multichannel integer-valued images
General Maintenance
Update skimage.future.manual_polygon_segmentation to work with Matplotlib 3.5.
Update skimage.io.imread to avoid warnings when using imageio>=2.16.2.
Now compatible with Pillow >= 9.1 (palette may contain <256 entries)
Added support for NumPy 1.23
Pull Requests Included
Backport PR #6306 on branch v0.19.x (Fix for error in 'Using Polar and Log-Polar Transformations for Registration') (#6312)
Backport PR #6271 on branch v0.19.x (hough_line_peaks fix for corner case with optimal angle=0) (#6313)
Backport PR #6261 on branch v0.19.x (Ignore sparse matrix deprecation warning) (#6316)
backport PR 6328: Fix issue with newer versions of matplotlib in manual segmentation (#6334)
Backport PR #6343 on branch v0.19.x (avoid warnings about change to v3 API from imageio) (#6344)
Backport PR #6355 on branch v0.19.x (remove use of deprecated kwargs from test_tifffile_kwarg_passthrough) (#6357)
Backport PR #6352 on branch v0.19.x (Fix channel_axis default for cycle_spin) (#6358)
Backport PR #6348 on branch v0.19.x (Fix smoothed image computation when mask is None in canny) (#6359)
Backport PR #6361 on branch v0.19.x (Document support for Path objects in io functions) (#6363)
Backport PR #6400 on branch v0.19.x (Add support for NumPy 1.23) (#6403)
Backport PR #6335 on branch v0.19.x (warp/rotate: fixed a bug with clipping when cval is not in the input range) (#6411)
Backport PR #6413 on branch v0.19.x (Fix computation of histogram bins for multichannel integer-valued images) (#6414)
0.19.2
Pull Requests Included
fix mistake in tests.yml made during backport (gh-6129)
Backport PR #6145 on branch v0.19.x (Fix channel_axis handling in pyramid_gaussian and pyramid_laplace) (gh-6155)
Backport PR #6130 on branch v0.19.x (bump deprecated Azure windows environment) (gh-6131)
Backport PR #6148 on branch v0.19.x (deprecate n_iter_max (should be max_num_iter)) (gh-6156)
Backport PR #6152 on branch v0.19.x (specify python version used by mybinder.org for gallery demos) (gh-6157)
Backport PR #6139 on branch v0.19.x (fix phase_cross_correlation typo) (gh-6158)
Backport PR #6133 on branch v0.19.x (Update user warning message for viewer module.) (gh-6159)
Backport PR #6169 on branch v0.19.x (Fix unintended change to output dtype of match_histograms) (gh-6172)
Backport PR #6184 on branch v0.19.x (Fix SIFT wrong octave indices + typo) (gh-6186)
Backport PR #6191 on branch v0.19.x (Fix issue6190 - inconsistent default parameters in pyramids.py) (gh-6193)
Backport PR #6207 on branch v0.19.x (Always set params to nan when ProjectiveTransform.estimate fails) (gh-6210)
Backport PR #5262 on branch v0.19.x (Add textbook-like tutorial on measuring fluorescence at nuclear envelope.) (gh-6213)
Backport PR #6087 on branch v0.19.x (Add two datasets for use in upcoming scientific tutorials.) (gh-6215)
Backport PR #6214 on branch v0.19.x (EuclideanTransform.estimate should return False when NaNs are present) (gh-6221)
Backport PR #6219 on branch v0.19.x (Allow the output_shape argument to be any iterable for resize and resize_local_mean) (gh-6222)
Backport PR #6223 on branch v0.19.x (Update filename in testing instructions.) (gh-6225)
Backport PR #6231 on branch v0.19.x (Update imports/refs from deprecated scipy.ndimage.filters namespace) (gh-6233)
Backport PR #6229 on branch v0.19.x (Remove redundant testing on Appveyor) (gh-6234)
Backport PR #6183 on branch v0.19.x (Fix decorators warnings stacklevel) (gh-6238)
Backport PR #6239 on branch v0.19.x (DOC: fix SciPy intersphinx) (gh-6241)
Backport PR #6232 on branch v0.19.x (Include Cython sources via package_data) (gh-6244)
Backport PR #6227 on branch v0.19.x (Fix calculation of Z normal in marching cubes) (gh-6245)
Backport PR #6242 on branch v0.19.x (Fix bug in SLIC superpixels with enforce_connectivity=True and start_label > 0) (gh-6246)
Backport PR #6211 on branch v0.19.x (PiecewiseAffineTransform.estimate return should reflect underlying transforms) gh-6247
update MacOS libomp installation in wheel building script (gh-6249)
0.19.3
Bugs Fixed
Revert unintentional change to default multichannel behavior introduced in v0.19.0 for skimage.restoration.cycle_spin (now defaults to single channel again)
Fix corner case with an optimal angle of 0 degrees in hough_line_peaks
Fixed the gallery example involving registration with log-polar transformations
Update test suite for compatibility with the most recent tifffile release.
warp/rotate: fixed a bug with clipping when cval is not in the input range
Fix computation of histogram bins for multichannel integer-valued images
General Maintenance
Update skimage.future.manual_polygon_segmentation to work with Matplotlib 3.5.
Update skimage.io.imread to avoid warnings when using imageio>=2.16.2.
Now compatible with Pillow >= 9.1 (palette may contain <256 entries)
Added support for NumPy 1.23
Pull Requests Included
Backport PR #6306 on branch v0.19.x (Fix for error in 'Using Polar and Log-Polar Transformations for Registration') (#6312)
Backport PR #6271 on branch v0.19.x (hough_line_peaks fix for corner case with optimal angle=0) (#6313)
Backport PR #6261 on branch v0.19.x (Ignore sparse matrix deprecation warning) (#6316)
backport PR 6328: Fix issue with newer versions of matplotlib in manual segmentation (#6334)
Backport PR #6343 on branch v0.19.x (avoid warnings about change to v3 API from imageio) (#6344)
Backport PR #6355 on branch v0.19.x (remove use of deprecated kwargs from test_tifffile_kwarg_passthrough) (#6357)
Backport PR #6352 on branch v0.19.x (Fix channel_axis default for cycle_spin) (#6358)
Backport PR #6348 on branch v0.19.x (Fix smoothed image computation when mask is None in canny) (#6359)
Backport PR #6361 on branch v0.19.x (Document support for Path objects in io functions) (#6363)
Backport PR #6400 on branch v0.19.x (Add support for NumPy 1.23) (#6403)
Backport PR #6335 on branch v0.19.x (warp/rotate: fixed a bug with clipping when cval is not in the input range) (#6411)
Backport PR #6413 on branch v0.19.x (Fix computation of histogram bins for multichannel integer-valued images) (#6414)
0.19.2
Pull Requests Included
fix mistake in tests.yml made during backport (gh-6129)
Backport PR #6145 on branch v0.19.x (Fix channel_axis handling in pyramid_gaussian and pyramid_laplace) (gh-6155)
Backport PR #6130 on branch v0.19.x (bump deprecated Azure windows environment) (gh-6131)
Backport PR #6148 on branch v0.19.x (deprecate n_iter_max (should be max_num_iter)) (gh-6156)
Backport PR #6152 on branch v0.19.x (specify python version used by mybinder.org for gallery demos) (gh-6157)
Backport PR #6139 on branch v0.19.x (fix phase_cross_correlation typo) (gh-6158)
Backport PR #6133 on branch v0.19.x (Update user warning message for viewer module.) (gh-6159)
Backport PR #6169 on branch v0.19.x (Fix unintended change to output dtype of match_histograms) (gh-6172)
Backport PR #6184 on branch v0.19.x (Fix SIFT wrong octave indices + typo) (gh-6186)
Backport PR #6191 on branch v0.19.x (Fix issue6190 - inconsistent default parameters in pyramids.py) (gh-6193)
Backport PR #6207 on branch v0.19.x (Always set params to nan when ProjectiveTransform.estimate fails) (gh-6210)
Backport PR #5262 on branch v0.19.x (Add textbook-like tutorial on measuring fluorescence at nuclear envelope.) (gh-6213)
Backport PR #6087 on branch v0.19.x (Add two datasets for use in upcoming scientific tutorials.) (gh-6215)
Backport PR #6214 on branch v0.19.x (EuclideanTransform.estimate should return False when NaNs are present) (gh-6221)
Backport PR #6219 on branch v0.19.x (Allow the output_shape argument to be any iterable for resize and resize_local_mean) (gh-6222)
Backport PR #6223 on branch v0.19.x (Update filename in testing instructions.) (gh-6225)
Backport PR #6231 on branch v0.19.x (Update imports/refs from deprecated scipy.ndimage.filters namespace) (gh-6233)
Backport PR #6229 on branch v0.19.x (Remove redundant testing on Appveyor) (gh-6234)
Backport PR #6183 on branch v0.19.x (Fix decorators warnings stacklevel) (gh-6238)
Backport PR #6239 on branch v0.19.x (DOC: fix SciPy intersphinx) (gh-6241)
Backport PR #6232 on branch v0.19.x (Include Cython sources via package_data) (gh-6244)
Backport PR #6227 on branch v0.19.x (Fix calculation of Z normal in marching cubes) (gh-6245)
Backport PR #6242 on branch v0.19.x (Fix bug in SLIC superpixels with enforce_connectivity=True and start_label > 0) (gh-6246)
Backport PR #6211 on branch v0.19.x (PiecewiseAffineTransform.estimate return should reflect underlying transforms) gh-6247
update MacOS libomp installation in wheel building script (gh-6249)
0.19.3
Bugs Fixed
Revert unintentional change to default multichannel behavior introduced in v0.19.0 for skimage.restoration.cycle_spin (now defaults to single channel again)
Fix corner case with an optimal angle of 0 degrees in hough_line_peaks
Fixed the gallery example involving registration with log-polar transformations
Update test suite for compatibility with the most recent tifffile release.
warp/rotate: fixed a bug with clipping when cval is not in the input range
Fix computation of histogram bins for multichannel integer-valued images
General Maintenance
Update skimage.future.manual_polygon_segmentation to work with Matplotlib 3.5.
Update skimage.io.imread to avoid warnings when using imageio>=2.16.2.
Now compatible with Pillow >= 9.1 (palette may contain <256 entries)
Added support for NumPy 1.23
Pull Requests Included
Backport PR #6306 on branch v0.19.x (Fix for error in 'Using Polar and Log-Polar Transformations for Registration') (#6312)
Backport PR #6271 on branch v0.19.x (hough_line_peaks fix for corner case with optimal angle=0) (#6313)
Backport PR #6261 on branch v0.19.x (Ignore sparse matrix deprecation warning) (#6316)
backport PR 6328: Fix issue with newer versions of matplotlib in manual segmentation (#6334)
Backport PR #6343 on branch v0.19.x (avoid warnings about change to v3 API from imageio) (#6344)
Backport PR #6355 on branch v0.19.x (remove use of deprecated kwargs from test_tifffile_kwarg_passthrough) (#6357)
Backport PR #6352 on branch v0.19.x (Fix channel_axis default for cycle_spin) (#6358)
Backport PR #6348 on branch v0.19.x (Fix smoothed image computation when mask is None in canny) (#6359)
Backport PR #6361 on branch v0.19.x (Document support for Path objects in io functions) (#6363)
Backport PR #6400 on branch v0.19.x (Add support for NumPy 1.23) (#6403)
Backport PR #6335 on branch v0.19.x (warp/rotate: fixed a bug with clipping when cval is not in the input range) (#6411)
Backport PR #6413 on branch v0.19.x (Fix computation of histogram bins for multichannel integer-valued images) (#6414)
0.19.2
Pull Requests Included
fix mistake in tests.yml made during backport (gh-6129)
Backport PR #6145 on branch v0.19.x (Fix channel_axis handling in pyramid_gaussian and pyramid_laplace) (gh-6155)
Backport PR #6130 on branch v0.19.x (bump deprecated Azure windows environment) (gh-6131)
Backport PR #6148 on branch v0.19.x (deprecate n_iter_max (should be max_num_iter)) (gh-6156)
Backport PR #6152 on branch v0.19.x (specify python version used by mybinder.org for gallery demos) (gh-6157)
Backport PR #6139 on branch v0.19.x (fix phase_cross_correlation typo) (gh-6158)
Backport PR #6133 on branch v0.19.x (Update user warning message for viewer module.) (gh-6159)
Backport PR #6169 on branch v0.19.x (Fix unintended change to output dtype of match_histograms) (gh-6172)
Backport PR #6184 on branch v0.19.x (Fix SIFT wrong octave indices + typo) (gh-6186)
Backport PR #6191 on branch v0.19.x (Fix issue6190 - inconsistent default parameters in pyramids.py) (gh-6193)
Backport PR #6207 on branch v0.19.x (Always set params to nan when ProjectiveTransform.estimate fails) (gh-6210)
Backport PR #5262 on branch v0.19.x (Add textbook-like tutorial on measuring fluorescence at nuclear envelope.) (gh-6213)
Backport PR #6087 on branch v0.19.x (Add two datasets for use in upcoming scientific tutorials.) (gh-6215)
Backport PR #6214 on branch v0.19.x (EuclideanTransform.estimate should return False when NaNs are present) (gh-6221)
Backport PR #6219 on branch v0.19.x (Allow the output_shape argument to be any iterable for resize and resize_local_mean) (gh-6222)
Backport PR #6223 on branch v0.19.x (Update filename in testing instructions.) (gh-6225)
Backport PR #6231 on branch v0.19.x (Update imports/refs from deprecated scipy.ndimage.filters namespace) (gh-6233)
Backport PR #6229 on branch v0.19.x (Remove redundant testing on Appveyor) (gh-6234)
Backport PR #6183 on branch v0.19.x (Fix decorators warnings stacklevel) (gh-6238)
Backport PR #6239 on branch v0.19.x (DOC: fix SciPy intersphinx) (gh-6241)
Backport PR #6232 on branch v0.19.x (Include Cython sources via package_data) (gh-6244)
Backport PR #6227 on branch v0.19.x (Fix calculation of Z normal in marching cubes) (gh-6245)
Backport PR #6242 on branch v0.19.x (Fix bug in SLIC superpixels with enforce_connectivity=True and start_label > 0) (gh-6246)
Backport PR #6211 on branch v0.19.x (PiecewiseAffineTransform.estimate return should reflect underlying transforms) gh-6247
update MacOS libomp installation in wheel building script (gh-6249)
0.19.3
Bugs Fixed
Revert unintentional change to default multichannel behavior introduced in v0.19.0 for skimage.restoration.cycle_spin (now defaults to single channel again)
Fix corner case with an optimal angle of 0 degrees in hough_line_peaks
Fixed the gallery example involving registration with log-polar transformations
Update test suite for compatibility with the most recent tifffile release.
warp/rotate: fixed a bug with clipping when cval is not in the input range
Fix computation of histogram bins for multichannel integer-valued images
General Maintenance
Update skimage.future.manual_polygon_segmentation to work with Matplotlib 3.5.
Update skimage.io.imread to avoid warnings when using imageio>=2.16.2.
Now compatible with Pillow >= 9.1 (palette may contain <256 entries)
Added support for NumPy 1.23
Pull Requests Included
Backport PR #6306 on branch v0.19.x (Fix for error in 'Using Polar and Log-Polar Transformations for Registration') (#6312)
Backport PR #6271 on branch v0.19.x (hough_line_peaks fix for corner case with optimal angle=0) (#6313)
Backport PR #6261 on branch v0.19.x (Ignore sparse matrix deprecation warning) (#6316)
backport PR 6328: Fix issue with newer versions of matplotlib in manual segmentation (#6334)
Backport PR #6343 on branch v0.19.x (avoid warnings about change to v3 API from imageio) (#6344)
Backport PR #6355 on branch v0.19.x (remove use of deprecated kwargs from test_tifffile_kwarg_passthrough) (#6357)
Backport PR #6352 on branch v0.19.x (Fix channel_axis default for cycle_spin) (#6358)
Backport PR #6348 on branch v0.19.x (Fix smoothed image computation when mask is None in canny) (#6359)
Backport PR #6361 on branch v0.19.x (Document support for Path objects in io functions) (#6363)
Backport PR #6400 on branch v0.19.x (Add support for NumPy 1.23) (#6403)
Backport PR #6335 on branch v0.19.x (warp/rotate: fixed a bug with clipping when cval is not in the input range) (#6411)
Backport PR #6413 on branch v0.19.x (Fix computation of histogram bins for multichannel integer-valued images) (#6414)
0.19.2
Pull Requests Included
fix mistake in tests.yml made during backport (gh-6129)
Backport PR #6145 on branch v0.19.x (Fix channel_axis handling in pyramid_gaussian and pyramid_laplace) (gh-6155)
Backport PR #6130 on branch v0.19.x (bump deprecated Azure windows environment) (gh-6131)
Backport PR #6148 on branch v0.19.x (deprecate n_iter_max (should be max_num_iter)) (gh-6156)
Backport PR #6152 on branch v0.19.x (specify python version used by mybinder.org for gallery demos) (gh-6157)
Backport PR #6139 on branch v0.19.x (fix phase_cross_correlation typo) (gh-6158)
Backport PR #6133 on branch v0.19.x (Update user warning message for viewer module.) (gh-6159)
Backport PR #6169 on branch v0.19.x (Fix unintended change to output dtype of match_histograms) (gh-6172)
Backport PR #6184 on branch v0.19.x (Fix SIFT wrong octave indices + typo) (gh-6186)
Backport PR #6191 on branch v0.19.x (Fix issue6190 - inconsistent default parameters in pyramids.py) (gh-6193)
Backport PR #6207 on branch v0.19.x (Always set params to nan when ProjectiveTransform.estimate fails) (gh-6210)
Backport PR #5262 on branch v0.19.x (Add textbook-like tutorial on measuring fluorescence at nuclear envelope.) (gh-6213)
Backport PR #6087 on branch v0.19.x (Add two datasets for use in upcoming scientific tutorials.) (gh-6215)
Backport PR #6214 on branch v0.19.x (EuclideanTransform.estimate should return False when NaNs are present) (gh-6221)
Backport PR #6219 on branch v0.19.x (Allow the output_shape argument to be any iterable for resize and resize_local_mean) (gh-6222)
Backport PR #6223 on branch v0.19.x (Update filename in testing instructions.) (gh-6225)
Backport PR #6231 on branch v0.19.x (Update imports/refs from deprecated scipy.ndimage.filters namespace) (gh-6233)
Backport PR #6229 on branch v0.19.x (Remove redundant testing on Appveyor) (gh-6234)
Backport PR #6183 on branch v0.19.x (Fix decorators warnings stacklevel) (gh-6238)
Backport PR #6239 on branch v0.19.x (DOC: fix SciPy intersphinx) (gh-6241)
Backport PR #6232 on branch v0.19.x (Include Cython sources via package_data) (gh-6244)
Backport PR #6227 on branch v0.19.x (Fix calculation of Z normal in marching cubes) (gh-6245)
Backport PR #6242 on branch v0.19.x (Fix bug in SLIC superpixels with enforce_connectivity=True and start_label > 0) (gh-6246)
Backport PR #6211 on branch v0.19.x (PiecewiseAffineTransform.estimate return should reflect underlying transforms) gh-6247
update MacOS libomp installation in wheel building script (gh-6249)
0.19.3
Bugs Fixed
Revert unintentional change to default multichannel behavior introduced in v0.19.0 for skimage.restoration.cycle_spin (now defaults to single channel again)
Fix corner case with an optimal angle of 0 degrees in hough_line_peaks
Fixed the gallery example involving registration with log-polar transformations
Update test suite for compatibility with the most recent tifffile release.
warp/rotate: fixed a bug with clipping when cval is not in the input range
Fix computation of histogram bins for multichannel integer-valued images
General Maintenance
Update skimage.future.manual_polygon_segmentation to work with Matplotlib 3.5.
Update skimage.io.imread to avoid warnings when using imageio>=2.16.2.
Now compatible with Pillow >= 9.1 (palette may contain <256 entries)
Added support for NumPy 1.23
Pull Requests Included
Backport PR #6306 on branch v0.19.x (Fix for error in 'Using Polar and Log-Polar Transformations for Registration') (#6312)
Backport PR #6271 on branch v0.19.x (hough_line_peaks fix for corner case with optimal angle=0) (#6313)
Backport PR #6261 on branch v0.19.x (Ignore sparse matrix deprecation warning) (#6316)
backport PR 6328: Fix issue with newer versions of matplotlib in manual segmentation (#6334)
Backport PR #6343 on branch v0.19.x (avoid warnings about change to v3 API from imageio) (#6344)
Backport PR #6355 on branch v0.19.x (remove use of deprecated kwargs from test_tifffile_kwarg_passthrough) (#6357)
Backport PR #6352 on branch v0.19.x (Fix channel_axis default for cycle_spin) (#6358)
Backport PR #6348 on branch v0.19.x (Fix smoothed image computation when mask is None in canny) (#6359)
Backport PR #6361 on branch v0.19.x (Document support for Path objects in io functions) (#6363)
Backport PR #6400 on branch v0.19.x (Add support for NumPy 1.23) (#6403)
Backport PR #6335 on branch v0.19.x (warp/rotate: fixed a bug with clipping when cval is not in the input range) (#6411)
Backport PR #6413 on branch v0.19.x (Fix computation of histogram bins for multichannel integer-valued images) (#6414)
0.19.2
Pull Requests Included
fix mistake in tests.yml made during backport (gh-6129)
Backport PR #6145 on branch v0.19.x (Fix channel_axis handling in pyramid_gaussian and pyramid_laplace) (gh-6155)
Backport PR #6130 on branch v0.19.x (bump deprecated Azure windows environment) (gh-6131)
Backport PR #6148 on branch v0.19.x (deprecate n_iter_max (should be max_num_iter)) (gh-6156)
Backport PR #6152 on branch v0.19.x (specify python version used by mybinder.org for gallery demos) (gh-6157)
Backport PR #6139 on branch v0.19.x (fix phase_cross_correlation typo) (gh-6158)
Backport PR #6133 on branch v0.19.x (Update user warning message for viewer module.) (gh-6159)
Backport PR #6169 on branch v0.19.x (Fix unintended change to output dtype of match_histograms) (gh-6172)
Backport PR #6184 on branch v0.19.x (Fix SIFT wrong octave indices + typo) (gh-6186)
Backport PR #6191 on branch v0.19.x (Fix issue6190 - inconsistent default parameters in pyramids.py) (gh-6193)
Backport PR #6207 on branch v0.19.x (Always set params to nan when ProjectiveTransform.estimate fails) (gh-6210)
Backport PR #5262 on branch v0.19.x (Add textbook-like tutorial on measuring fluorescence at nuclear envelope.) (gh-6213)
Backport PR #6087 on branch v0.19.x (Add two datasets for use in upcoming scientific tutorials.) (gh-6215)
Backport PR #6214 on branch v0.19.x (EuclideanTransform.estimate should return False when NaNs are present) (gh-6221)
Backport PR #6219 on branch v0.19.x (Allow the output_shape argument to be any iterable for resize and resize_local_mean) (gh-6222)
Backport PR #6223 on branch v0.19.x (Update filename in testing instructions.) (gh-6225)
Backport PR #6231 on branch v0.19.x (Update imports/refs from deprecated scipy.ndimage.filters namespace) (gh-6233)
Backport PR #6229 on branch v0.19.x (Remove redundant testing on Appveyor) (gh-6234)
Backport PR #6183 on branch v0.19.x (Fix decorators warnings stacklevel) (gh-6238)
Backport PR #6239 on branch v0.19.x (DOC: fix SciPy intersphinx) (gh-6241)
Backport PR #6232 on branch v0.19.x (Include Cython sources via package_data) (gh-6244)
Backport PR #6227 on branch v0.19.x (Fix calculation of Z normal in marching cubes) (gh-6245)
Backport PR #6242 on branch v0.19.x (Fix bug in SLIC superpixels with enforce_connectivity=True and start_label > 0) (gh-6246)
Backport PR #6211 on branch v0.19.x (PiecewiseAffineTransform.estimate return should reflect underlying transforms) gh-6247
update MacOS libomp installation in wheel building script (gh-6249)
0.19.3
Bugs Fixed
Revert unintentional change to default multichannel behavior introduced in v0.19.0 for skimage.restoration.cycle_spin (now defaults to single channel again)
Fix corner case with an optimal angle of 0 degrees in hough_line_peaks
Fixed the gallery example involving registration with log-polar transformations
Update test suite for compatibility with the most recent tifffile release.
warp/rotate: fixed a bug with clipping when cval is not in the input range
Fix computation of histogram bins for multichannel integer-valued images
General Maintenance
Update skimage.future.manual_polygon_segmentation to work with Matplotlib 3.5.
Update skimage.io.imread to avoid warnings when using imageio>=2.16.2.
Now compatible with Pillow >= 9.1 (palette may contain <256 entries)
Added support for NumPy 1.23
Pull Requests Included
Backport PR #6306 on branch v0.19.x (Fix for error in 'Using Polar and Log-Polar Transformations for Registration') (#6312)
Backport PR #6271 on branch v0.19.x (hough_line_peaks fix for corner case with optimal angle=0) (#6313)
Backport PR #6261 on branch v0.19.x (Ignore sparse matrix deprecation warning) (#6316)
backport PR 6328: Fix issue with newer versions of matplotlib in manual segmentation (#6334)
Backport PR #6343 on branch v0.19.x (avoid warnings about change to v3 API from imageio) (#6344)
Backport PR #6355 on branch v0.19.x (remove use of deprecated kwargs from test_tifffile_kwarg_passthrough) (#6357)
Backport PR #6352 on branch v0.19.x (Fix channel_axis default for cycle_spin) (#6358)
Backport PR #6348 on branch v0.19.x (Fix smoothed image computation when mask is None in canny) (#6359)
Backport PR #6361 on branch v0.19.x (Document support for Path objects in io functions) (#6363)
Backport PR #6400 on branch v0.19.x (Add support for NumPy 1.23) (#6403)
Backport PR #6335 on branch v0.19.x (warp/rotate: fixed a bug with clipping when cval is not in the input range) (#6411)
Backport PR #6413 on branch v0.19.x (Fix computation of histogram bins for multichannel integer-valued images) (#6414)
0.19.2
Pull Requests Included
fix mistake in tests.yml made during backport (gh-6129)
Backport PR #6145 on branch v0.19.x (Fix channel_axis handling in pyramid_gaussian and pyramid_laplace) (gh-6155)
Backport PR #6130 on branch v0.19.x (bump deprecated Azure windows environment) (gh-6131)
Backport PR #6148 on branch v0.19.x (deprecate n_iter_max (should be max_num_iter)) (gh-6156)
Backport PR #6152 on branch v0.19.x (specify python version used by mybinder.org for gallery demos) (gh-6157)
Backport PR #6139 on branch v0.19.x (fix phase_cross_correlation typo) (gh-6158)
Backport PR #6133 on branch v0.19.x (Update user warning message for viewer module.) (gh-6159)
Backport PR #6169 on branch v0.19.x (Fix unintended change to output dtype of match_histograms) (gh-6172)
Backport PR #6184 on branch v0.19.x (Fix SIFT wrong octave indices + typo) (gh-6186)
Backport PR #6191 on branch v0.19.x (Fix issue6190 - inconsistent default parameters in pyramids.py) (gh-6193)
Backport PR #6207 on branch v0.19.x (Always set params to nan when ProjectiveTransform.estimate fails) (gh-6210)
Backport PR #5262 on branch v0.19.x (Add textbook-like tutorial on measuring fluorescence at nuclear envelope.) (gh-6213)
Backport PR #6087 on branch v0.19.x (Add two datasets for use in upcoming scientific tutorials.) (gh-6215)
Backport PR #6214 on branch v0.19.x (EuclideanTransform.estimate should return False when NaNs are present) (gh-6221)
Backport PR #6219 on branch v0.19.x (Allow the output_shape argument to be any iterable for resize and resize_local_mean) (gh-6222)
Backport PR #6223 on branch v0.19.x (Update filename in testing instructions.) (gh-6225)
Backport PR #6231 on branch v0.19.x (Update imports/refs from deprecated scipy.ndimage.filters namespace) (gh-6233)
Backport PR #6229 on branch v0.19.x (Remove redundant testing on Appveyor) (gh-6234)
Backport PR #6183 on branch v0.19.x (Fix decorators warnings stacklevel) (gh-6238)
Backport PR #6239 on branch v0.19.x (DOC: fix SciPy intersphinx) (gh-6241)
Backport PR #6232 on branch v0.19.x (Include Cython sources via package_data) (gh-6244)
Backport PR #6227 on branch v0.19.x (Fix calculation of Z normal in marching cubes) (gh-6245)
Backport PR #6242 on branch v0.19.x (Fix bug in SLIC superpixels with enforce_connectivity=True and start_label > 0) (gh-6246)
Backport PR #6211 on branch v0.19.x (PiecewiseAffineTransform.estimate return should reflect underlying transforms) gh-6247
update MacOS libomp installation in wheel building script (gh-6249)
0.19.3
Bugs Fixed
Revert unintentional change to default multichannel behavior introduced in v0.19.0 for skimage.restoration.cycle_spin (now defaults to single channel again)
Fix corner case with an optimal angle of 0 degrees in hough_line_peaks
Fixed the gallery example involving registration with log-polar transformations
Update test suite for compatibility with the most recent tifffile release.
warp/rotate: fixed a bug with clipping when cval is not in the input range
Fix computation of histogram bins for multichannel integer-valued images
General Maintenance
Update skimage.future.manual_polygon_segmentation to work with Matplotlib 3.5.
Update skimage.io.imread to avoid warnings when using imageio>=2.16.2.
Now compatible with Pillow >= 9.1 (palette may contain <256 entries)
Added support for NumPy 1.23
Pull Requests Included
Backport PR #6306 on branch v0.19.x (Fix for error in 'Using Polar and Log-Polar Transformations for Registration') (#6312)
Backport PR #6271 on branch v0.19.x (hough_line_peaks fix for corner case with optimal angle=0) (#6313)
Backport PR #6261 on branch v0.19.x (Ignore sparse matrix deprecation warning) (#6316)
backport PR 6328: Fix issue with newer versions of matplotlib in manual segmentation (#6334)
Backport PR #6343 on branch v0.19.x (avoid warnings about change to v3 API from imageio) (#6344)
Backport PR #6355 on branch v0.19.x (remove use of deprecated kwargs from test_tifffile_kwarg_passthrough) (#6357)
Backport PR #6352 on branch v0.19.x (Fix channel_axis default for cycle_spin) (#6358)
Backport PR #6348 on branch v0.19.x (Fix smoothed image computation when mask is None in canny) (#6359)
Backport PR #6361 on branch v0.19.x (Document support for Path objects in io functions) (#6363)
Backport PR #6400 on branch v0.19.x (Add support for NumPy 1.23) (#6403)
Backport PR #6335 on branch v0.19.x (warp/rotate: fixed a bug with clipping when cval is not in the input range) (#6411)
Backport PR #6413 on branch v0.19.x (Fix computation of histogram bins for multichannel integer-valued images) (#6414)
0.19.2
Pull Requests Included
fix mistake in tests.yml made during backport (gh-6129)
Backport PR #6145 on branch v0.19.x (Fix channel_axis handling in pyramid_gaussian and pyramid_laplace) (gh-6155)
Backport PR #6130 on branch v0.19.x (bump deprecated Azure windows environment) (gh-6131)
Backport PR #6148 on branch v0.19.x (deprecate n_iter_max (should be max_num_iter)) (gh-6156)
Backport PR #6152 on branch v0.19.x (specify python version used by mybinder.org for gallery demos) (gh-6157)
Backport PR #6139 on branch v0.19.x (fix phase_cross_correlation typo) (gh-6158)
Backport PR #6133 on branch v0.19.x (Update user warning message for viewer module.) (gh-6159)
Backport PR #6169 on branch v0.19.x (Fix unintended change to output dtype of match_histograms) (gh-6172)
Backport PR #6184 on branch v0.19.x (Fix SIFT wrong octave indices + typo) (gh-6186)
Backport PR #6191 on branch v0.19.x (Fix issue6190 - inconsistent default parameters in pyramids.py) (gh-6193)
Backport PR #6207 on branch v0.19.x (Always set params to nan when ProjectiveTransform.estimate fails) (gh-6210)
Backport PR #5262 on branch v0.19.x (Add textbook-like tutorial on measuring fluorescence at nuclear envelope.) (gh-6213)
Backport PR #6087 on branch v0.19.x (Add two datasets for use in upcoming scientific tutorials.) (gh-6215)
Backport PR #6214 on branch v0.19.x (EuclideanTransform.estimate should return False when NaNs are present) (gh-6221)
Backport PR #6219 on branch v0.19.x (Allow the output_shape argument to be any iterable for resize and resize_local_mean) (gh-6222)
Backport PR #6223 on branch v0.19.x (Update filename in testing instructions.) (gh-6225)
Backport PR #6231 on branch v0.19.x (Update imports/refs from deprecated scipy.ndimage.filters namespace) (gh-6233)
Backport PR #6229 on branch v0.19.x (Remove redundant testing on Appveyor) (gh-6234)
Backport PR #6183 on branch v0.19.x (Fix decorators warnings stacklevel) (gh-6238)
Backport PR #6239 on branch v0.19.x (DOC: fix SciPy intersphinx) (gh-6241)
Backport PR #6232 on branch v0.19.x (Include Cython sources via package_data) (gh-6244)
Backport PR #6227 on branch v0.19.x (Fix calculation of Z normal in marching cubes) (gh-6245)
Backport PR #6242 on branch v0.19.x (Fix bug in SLIC superpixels with enforce_connectivity=True and start_label > 0) (gh-6246)
Backport PR #6211 on branch v0.19.x (PiecewiseAffineTransform.estimate return should reflect underlying transforms) gh-6247
update MacOS libomp installation in wheel building script (gh-6249)
0.19.3
Bugs Fixed
Revert unintentional change to default multichannel behavior introduced in v0.19.0 for skimage.restoration.cycle_spin (now defaults to single channel again)
Fix corner case with an optimal angle of 0 degrees in hough_line_peaks
Fixed the gallery example involving registration with log-polar transformations
Update test suite for compatibility with the most recent tifffile release.
warp/rotate: fixed a bug with clipping when cval is not in the input range
Fix computation of histogram bins for multichannel integer-valued images
General Maintenance
Update skimage.future.manual_polygon_segmentation to work with Matplotlib 3.5.
Update skimage.io.imread to avoid warnings when using imageio>=2.16.2.
Now compatible with Pillow >= 9.1 (palette may contain <256 entries)
Added support for NumPy 1.23
Pull Requests Included
Backport PR #6306 on branch v0.19.x (Fix for error in 'Using Polar and Log-Polar Transformations for Registration') (#6312)
Backport PR #6271 on branch v0.19.x (hough_line_peaks fix for corner case with optimal angle=0) (#6313)
Backport PR #6261 on branch v0.19.x (Ignore sparse matrix deprecation warning) (#6316)
backport PR 6328: Fix issue with newer versions of matplotlib in manual segmentation (#6334)
Backport PR #6343 on branch v0.19.x (avoid warnings about change to v3 API from imageio) (#6344)
Backport PR #6355 on branch v0.19.x (remove use of deprecated kwargs from test_tifffile_kwarg_passthrough) (#6357)
Backport PR #6352 on branch v0.19.x (Fix channel_axis default for cycle_spin) (#6358)
Backport PR #6348 on branch v0.19.x (Fix smoothed image computation when mask is None in canny) (#6359)
Backport PR #6361 on branch v0.19.x (Document support for Path objects in io functions) (#6363)
Backport PR #6400 on branch v0.19.x (Add support for NumPy 1.23) (#6403)
Backport PR #6335 on branch v0.19.x (warp/rotate: fixed a bug with clipping when cval is not in the input range) (#6411)
Backport PR #6413 on branch v0.19.x (Fix computation of histogram bins for multichannel integer-valued images) (#6414)
0.19.2
Pull Requests Included
fix mistake in tests.yml made during backport (gh-6129)
Backport PR #6145 on branch v0.19.x (Fix channel_axis handling in pyramid_gaussian and pyramid_laplace) (gh-6155)
Backport PR #6130 on branch v0.19.x (bump deprecated Azure windows environment) (gh-6131)
Backport PR #6148 on branch v0.19.x (deprecate n_iter_max (should be max_num_iter)) (gh-6156)
Backport PR #6152 on branch v0.19.x (specify python version used by mybinder.org for gallery demos) (gh-6157)
Backport PR #6139 on branch v0.19.x (fix phase_cross_correlation typo) (gh-6158)
Backport PR #6133 on branch v0.19.x (Update user warning message for viewer module.) (gh-6159)
Backport PR #6169 on branch v0.19.x (Fix unintended change to output dtype of match_histograms) (gh-6172)
Backport PR #6184 on branch v0.19.x (Fix SIFT wrong octave indices + typo) (gh-6186)
Backport PR #6191 on branch v0.19.x (Fix issue6190 - inconsistent default parameters in pyramids.py) (gh-6193)
Backport PR #6207 on branch v0.19.x (Always set params to nan when ProjectiveTransform.estimate fails) (gh-6210)
Backport PR #5262 on branch v0.19.x (Add textbook-like tutorial on measuring fluorescence at nuclear envelope.) (gh-6213)
Backport PR #6087 on branch v0.19.x (Add two datasets for use in upcoming scientific tutorials.) (gh-6215)
Backport PR #6214 on branch v0.19.x (EuclideanTransform.estimate should return False when NaNs are present) (gh-6221)
Backport PR #6219 on branch v0.19.x (Allow the output_shape argument to be any iterable for resize and resize_local_mean) (gh-6222)
Backport PR #6223 on branch v0.19.x (Update filename in testing instructions.) (gh-6225)
Backport PR #6231 on branch v0.19.x (Update imports/refs from deprecated scipy.ndimage.filters namespace) (gh-6233)
Backport PR #6229 on branch v0.19.x (Remove redundant testing on Appveyor) (gh-6234)
Backport PR #6183 on branch v0.19.x (Fix decorators warnings stacklevel) (gh-6238)
Backport PR #6239 on branch v0.19.x (DOC: fix SciPy intersphinx) (gh-6241)
Backport PR #6232 on branch v0.19.x (Include Cython sources via package_data) (gh-6244)
Backport PR #6227 on branch v0.19.x (Fix calculation of Z normal in marching cubes) (gh-6245)
Backport PR #6242 on branch v0.19.x (Fix bug in SLIC superpixels with enforce_connectivity=True and start_label > 0) (gh-6246)
Backport PR #6211 on branch v0.19.x (PiecewiseAffineTransform.estimate return should reflect underlying transforms) gh-6247
update MacOS libomp installation in wheel building script (gh-6249)
0.19.3
Bugs Fixed
Revert unintentional change to default multichannel behavior introduced in v0.19.0 for skimage.restoration.cycle_spin (now defaults to single channel again)
Fix corner case with an optimal angle of 0 degrees in hough_line_peaks
Fixed the gallery example involving registration with log-polar transformations
Update test suite for compatibility with the most recent tifffile release.
warp/rotate: fixed a bug with clipping when cval is not in the input range
Fix computation of histogram bins for multichannel integer-valued images
General Maintenance
Update skimage.future.manual_polygon_segmentation to work with Matplotlib 3.5.
Update skimage.io.imread to avoid warnings when using imageio>=2.16.2.
Now compatible with Pillow >= 9.1 (palette may contain <256 entries)
Added support for NumPy 1.23
Pull Requests Included
Backport PR #6306 on branch v0.19.x (Fix for error in 'Using Polar and Log-Polar Transformations for Registration') (#6312)
Backport PR #6271 on branch v0.19.x (hough_line_peaks fix for corner case with optimal angle=0) (#6313)
Backport PR #6261 on branch v0.19.x (Ignore sparse matrix deprecation warning) (#6316)
backport PR 6328: Fix issue with newer versions of matplotlib in manual segmentation (#6334)
Backport PR #6343 on branch v0.19.x (avoid warnings about change to v3 API from imageio) (#6344)
Backport PR #6355 on branch v0.19.x (remove use of deprecated kwargs from test_tifffile_kwarg_passthrough) (#6357)
Backport PR #6352 on branch v0.19.x (Fix channel_axis default for cycle_spin) (#6358)
Backport PR #6348 on branch v0.19.x (Fix smoothed image computation when mask is None in canny) (#6359)
Backport PR #6361 on branch v0.19.x (Document support for Path objects in io functions) (#6363)
Backport PR #6400 on branch v0.19.x (Add support for NumPy 1.23) (#6403)
Backport PR #6335 on branch v0.19.x (warp/rotate: fixed a bug with clipping when cval is not in the input range) (#6411)
Backport PR #6413 on branch v0.19.x (Fix computation of histogram bins for multichannel integer-valued images) (#6414)
0.19.2
Pull Requests Included
fix mistake in tests.yml made during backport (gh-6129)
Backport PR #6145 on branch v0.19.x (Fix channel_axis handling in pyramid_gaussian and pyramid_laplace) (gh-6155)
Backport PR #6130 on branch v0.19.x (bump deprecated Azure windows environment) (gh-6131)
Backport PR #6148 on branch v0.19.x (deprecate n_iter_max (should be max_num_iter)) (gh-6156)
Backport PR #6152 on branch v0.19.x (specify python version used by mybinder.org for gallery demos) (gh-6157)
Backport PR #6139 on branch v0.19.x (fix phase_cross_correlation typo) (gh-6158)
Backport PR #6133 on branch v0.19.x (Update user warning message for viewer module.) (gh-6159)
Backport PR #6169 on branch v0.19.x (Fix unintended change to output dtype of match_histograms) (gh-6172)
Backport PR #6184 on branch v0.19.x (Fix SIFT wrong octave indices + typo) (gh-6186)
Backport PR #6191 on branch v0.19.x (Fix issue6190 - inconsistent default parameters in pyramids.py) (gh-6193)
Backport PR #6207 on branch v0.19.x (Always set params to nan when ProjectiveTransform.estimate fails) (gh-6210)
Backport PR #5262 on branch v0.19.x (Add textbook-like tutorial on measuring fluorescence at nuclear envelope.) (gh-6213)
Backport PR #6087 on branch v0.19.x (Add two datasets for use in upcoming scientific tutorials.) (gh-6215)
Backport PR #6214 on branch v0.19.x (EuclideanTransform.estimate should return False when NaNs are present) (gh-6221)
Backport PR #6219 on branch v0.19.x (Allow the output_shape argument to be any iterable for resize and resize_local_mean) (gh-6222)
Backport PR #6223 on branch v0.19.x (Update filename in testing instructions.) (gh-6225)
Backport PR #6231 on branch v0.19.x (Update imports/refs from deprecated scipy.ndimage.filters namespace) (gh-6233)
Backport PR #6229 on branch v0.19.x (Remove redundant testing on Appveyor) (gh-6234)
Backport PR #6183 on branch v0.19.x (Fix decorators warnings stacklevel) (gh-6238)
Backport PR #6239 on branch v0.19.x (DOC: fix SciPy intersphinx) (gh-6241)
Backport PR #6232 on branch v0.19.x (Include Cython sources via package_data) (gh-6244)
Backport PR #6227 on branch v0.19.x (Fix calculation of Z normal in marching cubes) (gh-6245)
Backport PR #6242 on branch v0.19.x (Fix bug in SLIC superpixels with enforce_connectivity=True and start_label > 0) (gh-6246)
Backport PR #6211 on branch v0.19.x (PiecewiseAffineTransform.estimate return should reflect underlying transforms) gh-6247
update MacOS libomp installation in wheel building script (gh-6249)
0.19.3
Bugs Fixed
Revert unintentional change to default multichannel behavior introduced in v0.19.0 for skimage.restoration.cycle_spin (now defaults to single channel again)
Fix corner case with an optimal angle of 0 degrees in hough_line_peaks
Fixed the gallery example involving registration with log-polar transformations
Update test suite for compatibility with the most recent tifffile release.
warp/rotate: fixed a bug with clipping when cval is not in the input range
Fix computation of histogram bins for multichannel integer-valued images
General Maintenance
Update skimage.future.manual_polygon_segmentation to work with Matplotlib 3.5.
Update skimage.io.imread to avoid warnings when using imageio>=2.16.2.
Now compatible with Pillow >= 9.1 (palette may contain <256 entries)
Added support for NumPy 1.23
Pull Requests Included
Backport PR #6306 on branch v0.19.x (Fix for error in 'Using Polar and Log-Polar Transformations for Registration') (#6312)
Backport PR #6271 on branch v0.19.x (hough_line_peaks fix for corner case with optimal angle=0) (#6313)
Backport PR #6261 on branch v0.19.x (Ignore sparse matrix deprecation warning) (#6316)
backport PR 6328: Fix issue with newer versions of matplotlib in manual segmentation (#6334)
Backport PR #6343 on branch v0.19.x (avoid warnings about change to v3 API from imageio) (#6344)
Backport PR #6355 on branch v0.19.x (remove use of deprecated kwargs from test_tifffile_kwarg_passthrough) (#6357)
Backport PR #6352 on branch v0.19.x (Fix channel_axis default for cycle_spin) (#6358)
Backport PR #6348 on branch v0.19.x (Fix smoothed image computation when mask is None in canny) (#6359)
Backport PR #6361 on branch v0.19.x (Document support for Path objects in io functions) (#6363)
Backport PR #6400 on branch v0.19.x (Add support for NumPy 1.23) (#6403)
Backport PR #6335 on branch v0.19.x (warp/rotate: fixed a bug with clipping when cval is not in the input range) (#6411)
Backport PR #6413 on branch v0.19.x (Fix computation of histogram bins for multichannel integer-valued images) (#6414)
0.19.2
Pull Requests Included
fix mistake in tests.yml made during backport (gh-6129)
Backport PR #6145 on branch v0.19.x (Fix channel_axis handling in pyramid_gaussian and pyramid_laplace) (gh-6155)
Backport PR #6130 on branch v0.19.x (bump deprecated Azure windows environment) (gh-6131)
Backport PR #6148 on branch v0.19.x (deprecate n_iter_max (should be max_num_iter)) (gh-6156)
Backport PR #6152 on branch v0.19.x (specify python version used by mybinder.org for gallery demos) (gh-6157)
Backport PR #6139 on branch v0.19.x (fix phase_cross_correlation typo) (gh-6158)
Backport PR #6133 on branch v0.19.x (Update user warning message for viewer module.) (gh-6159)
Backport PR #6169 on branch v0.19.x (Fix unintended change to output dtype of match_histograms) (gh-6172)
Backport PR #6184 on branch v0.19.x (Fix SIFT wrong octave indices + typo) (gh-6186)
Backport PR #6191 on branch v0.19.x (Fix issue6190 - inconsistent default parameters in pyramids.py) (gh-6193)
Backport PR #6207 on branch v0.19.x (Always set params to nan when ProjectiveTransform.estimate fails) (gh-6210)
Backport PR #5262 on branch v0.19.x (Add textbook-like tutorial on measuring fluorescence at nuclear envelope.) (gh-6213)
Backport PR #6087 on branch v0.19.x (Add two datasets for use in upcoming scientific tutorials.) (gh-6215)
Backport PR #6214 on branch v0.19.x (EuclideanTransform.estimate should return False when NaNs are present) (gh-6221)
Backport PR #6219 on branch v0.19.x (Allow the output_shape argument to be any iterable for resize and resize_local_mean) (gh-6222)
Backport PR #6223 on branch v0.19.x (Update filename in testing instructions.) (gh-6225)
Backport PR #6231 on branch v0.19.x (Update imports/refs from deprecated scipy.ndimage.filters namespace) (gh-6233)
Backport PR #6229 on branch v0.19.x (Remove redundant testing on Appveyor) (gh-6234)
Backport PR #6183 on branch v0.19.x (Fix decorators warnings stacklevel) (gh-6238)
Backport PR #6239 on branch v0.19.x (DOC: fix SciPy intersphinx) (gh-6241)
Backport PR #6232 on branch v0.19.x (Include Cython sources via package_data) (gh-6244)
Backport PR #6227 on branch v0.19.x (Fix calculation of Z normal in marching cubes) (gh-6245)
Backport PR #6242 on branch v0.19.x (Fix bug in SLIC superpixels with enforce_connectivity=True and start_label > 0) (gh-6246)
Backport PR #6211 on branch v0.19.x (PiecewiseAffineTransform.estimate return should reflect underlying transforms) gh-6247
update MacOS libomp installation in wheel building script (gh-6249)
0.19.3
Bugs Fixed
Revert unintentional change to default multichannel behavior introduced in v0.19.0 for skimage.restoration.cycle_spin (now defaults to single channel again)
Fix corner case with an optimal angle of 0 degrees in hough_line_peaks
Fixed the gallery example involving registration with log-polar transformations
Update test suite for compatibility with the most recent tifffile release.
warp/rotate: fixed a bug with clipping when cval is not in the input range
Fix computation of histogram bins for multichannel integer-valued images
General Maintenance
Update skimage.future.manual_polygon_segmentation to work with Matplotlib 3.5.
Update skimage.io.imread to avoid warnings when using imageio>=2.16.2.
Now compatible with Pillow >= 9.1 (palette may contain <256 entries)
Added support for NumPy 1.23
Pull Requests Included
Backport PR #6306 on branch v0.19.x (Fix for error in 'Using Polar and Log-Polar Transformations for Registration') (#6312)
Backport PR #6271 on branch v0.19.x (hough_line_peaks fix for corner case with optimal angle=0) (#6313)
Backport PR #6261 on branch v0.19.x (Ignore sparse matrix deprecation warning) (#6316)
backport PR 6328: Fix issue with newer versions of matplotlib in manual segmentation (#6334)
Backport PR #6343 on branch v0.19.x (avoid warnings about change to v3 API from imageio) (#6344)
Backport PR #6355 on branch v0.19.x (remove use of deprecated kwargs from test_tifffile_kwarg_passthrough) (#6357)
Backport PR #6352 on branch v0.19.x (Fix channel_axis default for cycle_spin) (#6358)
Backport PR #6348 on branch v0.19.x (Fix smoothed image computation when mask is None in canny) (#6359)
Backport PR #6361 on branch v0.19.x (Document support for Path objects in io functions) (#6363)
Backport PR #6400 on branch v0.19.x (Add support for NumPy 1.23) (#6403)
Backport PR #6335 on branch v0.19.x (warp/rotate: fixed a bug with clipping when cval is not in the input range) (#6411)
Backport PR #6413 on branch v0.19.x (Fix computation of histogram bins for multichannel integer-valued images) (#6414)
0.19.2
Pull Requests Included
fix mistake in tests.yml made during backport (gh-6129)
Backport PR #6145 on branch v0.19.x (Fix channel_axis handling in pyramid_gaussian and pyramid_laplace) (gh-6155)
Backport PR #6130 on branch v0.19.x (bump deprecated Azure windows environment) (gh-6131)
Backport PR #6148 on branch v0.19.x (deprecate n_iter_max (should be max_num_iter)) (gh-6156)
Backport PR #6152 on branch v0.19.x (specify python version used by mybinder.org for gallery demos) (gh-6157)
Backport PR #6139 on branch v0.19.x (fix phase_cross_correlation typo) (gh-6158)
Backport PR #6133 on branch v0.19.x (Update user warning message for viewer module.) (gh-6159)
Backport PR #6169 on branch v0.19.x (Fix unintended change to output dtype of match_histograms) (gh-6172)
Backport PR #6184 on branch v0.19.x (Fix SIFT wrong octave indices + typo) (gh-6186)
Backport PR #6191 on branch v0.19.x (Fix issue6190 - inconsistent default parameters in pyramids.py) (gh-6193)
Backport PR #6207 on branch v0.19.x (Always set params to nan when ProjectiveTransform.estimate fails) (gh-6210)
Backport PR #5262 on branch v0.19.x (Add textbook-like tutorial on measuring fluorescence at nuclear envelope.) (gh-6213)
Backport PR #6087 on branch v0.19.x (Add two datasets for use in upcoming scientific tutorials.) (gh-6215)
Backport PR #6214 on branch v0.19.x (EuclideanTransform.estimate should return False when NaNs are present) (gh-6221)
Backport PR #6219 on branch v0.19.x (Allow the output_shape argument to be any iterable for resize and resize_local_mean) (gh-6222)
Backport PR #6223 on branch v0.19.x (Update filename in testing instructions.) (gh-6225)
Backport PR #6231 on branch v0.19.x (Update imports/refs from deprecated scipy.ndimage.filters namespace) (gh-6233)
Backport PR #6229 on branch v0.19.x (Remove redundant testing on Appveyor) (gh-6234)
Backport PR #6183 on branch v0.19.x (Fix decorators warnings stacklevel) (gh-6238)
Backport PR #6239 on branch v0.19.x (DOC: fix SciPy intersphinx) (gh-6241)
Backport PR #6232 on branch v0.19.x (Include Cython sources via package_data) (gh-6244)
Backport PR #6227 on branch v0.19.x (Fix calculation of Z normal in marching cubes) (gh-6245)
Backport PR #6242 on branch v0.19.x (Fix bug in SLIC superpixels with enforce_connectivity=True and start_label > 0) (gh-6246)
Backport PR #6211 on branch v0.19.x (PiecewiseAffineTransform.estimate return should reflect underlying transforms) gh-6247
update MacOS libomp installation in wheel building script (gh-6249)
0.19.3
Bugs Fixed
Revert unintentional change to default multichannel behavior introduced in v0.19.0 for skimage.restoration.cycle_spin (now defaults to single channel again)
Fix corner case with an optimal angle of 0 degrees in hough_line_peaks
Fixed the gallery example involving registration with log-polar transformations
Update test suite for compatibility with the most recent tifffile release.
warp/rotate: fixed a bug with clipping when cval is not in the input range
Fix computation of histogram bins for multichannel integer-valued images
General Maintenance
Update skimage.future.manual_polygon_segmentation to work with Matplotlib 3.5.
Update skimage.io.imread to avoid warnings when using imageio>=2.16.2.
Now compatible with Pillow >= 9.1 (palette may contain <256 entries)
Added support for NumPy 1.23
Pull Requests Included
Backport PR #6306 on branch v0.19.x (Fix for error in 'Using Polar and Log-Polar Transformations for Registration') (#6312)
Backport PR #6271 on branch v0.19.x (hough_line_peaks fix for corner case with optimal angle=0) (#6313)
Backport PR #6261 on branch v0.19.x (Ignore sparse matrix deprecation warning) (#6316)
backport PR 6328: Fix issue with newer versions of matplotlib in manual segmentation (#6334)
Backport PR #6343 on branch v0.19.x (avoid warnings about change to v3 API from imageio) (#6344)
Backport PR #6355 on branch v0.19.x (remove use of deprecated kwargs from test_tifffile_kwarg_passthrough) (#6357)
Backport PR #6352 on branch v0.19.x (Fix channel_axis default for cycle_spin) (#6358)
Backport PR #6348 on branch v0.19.x (Fix smoothed image computation when mask is None in canny) (#6359)
Backport PR #6361 on branch v0.19.x (Document support for Path objects in io functions) (#6363)
Backport PR #6400 on branch v0.19.x (Add support for NumPy 1.23) (#6403)
Backport PR #6335 on branch v0.19.x (warp/rotate: fixed a bug with clipping when cval is not in the input range) (#6411)
Backport PR #6413 on branch v0.19.x (Fix computation of histogram bins for multichannel integer-valued images) (#6414)
0.19.2
Pull Requests Included
fix mistake in tests.yml made during backport (gh-6129)
Backport PR #6145 on branch v0.19.x (Fix channel_axis handling in pyramid_gaussian and pyramid_laplace) (gh-6155)
Backport PR #6130 on branch v0.19.x (bump deprecated Azure windows environment) (gh-6131)
Backport PR #6148 on branch v0.19.x (deprecate n_iter_max (should be max_num_iter)) (gh-6156)
Backport PR #6152 on branch v0.19.x (specify python version used by mybinder.org for gallery demos) (gh-6157)
Backport PR #6139 on branch v0.19.x (fix phase_cross_correlation typo) (gh-6158)
Backport PR #6133 on branch v0.19.x (Update user warning message for viewer module.) (gh-6159)
Backport PR #6169 on branch v0.19.x (Fix unintended change to output dtype of match_histograms) (gh-6172)
Backport PR #6184 on branch v0.19.x (Fix SIFT wrong octave indices + typo) (gh-6186)
Backport PR #6191 on branch v0.19.x (Fix issue6190 - inconsistent default parameters in pyramids.py) (gh-6193)
Backport PR #6207 on branch v0.19.x (Always set params to nan when ProjectiveTransform.estimate fails) (gh-6210)
Backport PR #5262 on branch v0.19.x (Add textbook-like tutorial on measuring fluorescence at nuclear envelope.) (gh-6213)
Backport PR #6087 on branch v0.19.x (Add two datasets for use in upcoming scientific tutorials.) (gh-6215)
Backport PR #6214 on branch v0.19.x (EuclideanTransform.estimate should return False when NaNs are present) (gh-6221)
Backport PR #6219 on branch v0.19.x (Allow the output_shape argument to be any iterable for resize and resize_local_mean) (gh-6222)
Backport PR #6223 on branch v0.19.x (Update filename in testing instructions.) (gh-6225)
Backport PR #6231 on branch v0.19.x (Update imports/refs from deprecated scipy.ndimage.filters namespace) (gh-6233)
Backport PR #6229 on branch v0.19.x (Remove redundant testing on Appveyor) (gh-6234)
Backport PR #6183 on branch v0.19.x (Fix decorators warnings stacklevel) (gh-6238)
Backport PR #6239 on branch v0.19.x (DOC: fix SciPy intersphinx) (gh-6241)
Backport PR #6232 on branch v0.19.x (Include Cython sources via package_data) (gh-6244)
Backport PR #6227 on branch v0.19.x (Fix calculation of Z normal in marching cubes) (gh-6245)
Backport PR #6242 on branch v0.19.x (Fix bug in SLIC superpixels with enforce_connectivity=True and start_label > 0) (gh-6246)
Backport PR #6211 on branch v0.19.x (PiecewiseAffineTransform.estimate return should reflect underlying transforms) gh-6247
update MacOS libomp installation in wheel building script (gh-6249)
0.19.3
Bugs Fixed
Revert unintentional change to default multichannel behavior introduced in v0.19.0 for skimage.restoration.cycle_spin (now defaults to single channel again)
Fix corner case with an optimal angle of 0 degrees in hough_line_peaks
Fixed the gallery example involving registration with log-polar transformations
Update test suite for compatibility with the most recent tifffile release.
warp/rotate: fixed a bug with clipping when cval is not in the input range
Fix computation of histogram bins for multichannel integer-valued images
General Maintenance
Update skimage.future.manual_polygon_segmentation to work with Matplotlib 3.5.
Update skimage.io.imread to avoid warnings when using imageio>=2.16.2.
Now compatible with Pillow >= 9.1 (palette may contain <256 entries)
Added support for NumPy 1.23
Pull Requests Included
Backport PR #6306 on branch v0.19.x (Fix for error in 'Using Polar and Log-Polar Transformations for Registration') (#6312)
Backport PR #6271 on branch v0.19.x (hough_line_peaks fix for corner case with optimal angle=0) (#6313)
Backport PR #6261 on branch v0.19.x (Ignore sparse matrix deprecation warning) (#6316)
backport PR 6328: Fix issue with newer versions of matplotlib in manual segmentation (#6334)
Backport PR #6343 on branch v0.19.x (avoid warnings about change to v3 API from imageio) (#6344)
Backport PR #6355 on branch v0.19.x (remove use of deprecated kwargs from test_tifffile_kwarg_passthrough) (#6357)
Backport PR #6352 on branch v0.19.x (Fix channel_axis default for cycle_spin) (#6358)
Backport PR #6348 on branch v0.19.x (Fix smoothed image computation when mask is None in canny) (#6359)
Backport PR #6361 on branch v0.19.x (Document support for Path objects in io functions) (#6363)
Backport PR #6400 on branch v0.19.x (Add support for NumPy 1.23) (#6403)
Backport PR #6335 on branch v0.19.x (warp/rotate: fixed a bug with clipping when cval is not in the input range) (#6411)
Backport PR #6413 on branch v0.19.x (Fix computation of histogram bins for multichannel integer-valued images) (#6414)
0.19.2
Pull Requests Included
fix mistake in tests.yml made during backport (gh-6129)
Backport PR #6145 on branch v0.19.x (Fix channel_axis handling in pyramid_gaussian and pyramid_laplace) (gh-6155)
Backport PR #6130 on branch v0.19.x (bump deprecated Azure windows environment) (gh-6131)
Backport PR #6148 on branch v0.19.x (deprecate n_iter_max (should be max_num_iter)) (gh-6156)
Backport PR #6152 on branch v0.19.x (specify python version used by mybinder.org for gallery demos) (gh-6157)
Backport PR #6139 on branch v0.19.x (fix phase_cross_correlation typo) (gh-6158)
Backport PR #6133 on branch v0.19.x (Update user warning message for viewer module.) (gh-6159)
Backport PR #6169 on branch v0.19.x (Fix unintended change to output dtype of match_histograms) (gh-6172)
Backport PR #6184 on branch v0.19.x (Fix SIFT wrong octave indices + typo) (gh-6186)
Backport PR #6191 on branch v0.19.x (Fix issue6190 - inconsistent default parameters in pyramids.py) (gh-6193)
Backport PR #6207 on branch v0.19.x (Always set params to nan when ProjectiveTransform.estimate fails) (gh-6210)
Backport PR #5262 on branch v0.19.x (Add textbook-like tutorial on measuring fluorescence at nuclear envelope.) (gh-6213)
Backport PR #6087 on branch v0.19.x (Add two datasets for use in upcoming scientific tutorials.) (gh-6215)
Backport PR #6214 on branch v0.19.x (EuclideanTransform.estimate should return False when NaNs are present) (gh-6221)
Backport PR #6219 on branch v0.19.x (Allow the output_shape argument to be any iterable for resize and resize_local_mean) (gh-6222)
Backport PR #6223 on branch v0.19.x (Update filename in testing instructions.) (gh-6225)
Backport PR #6231 on branch v0.19.x (Update imports/refs from deprecated scipy.ndimage.filters namespace) (gh-6233)
Backport PR #6229 on branch v0.19.x (Remove redundant testing on Appveyor) (gh-6234)
Backport PR #6183 on branch v0.19.x (Fix decorators warnings stacklevel) (gh-6238)
Backport PR #6239 on branch v0.19.x (DOC: fix SciPy intersphinx) (gh-6241)
Backport PR #6232 on branch v0.19.x (Include Cython sources via package_data) (gh-6244)
Backport PR #6227 on branch v0.19.x (Fix calculation of Z normal in marching cubes) (gh-6245)
Backport PR #6242 on branch v0.19.x (Fix bug in SLIC superpixels with enforce_connectivity=True and start_label > 0) (gh-6246)
Backport PR #6211 on branch v0.19.x (PiecewiseAffineTransform.estimate return should reflect underlying transforms) gh-6247
update MacOS libomp installation in wheel building script (gh-6249)
0.19.3
Bugs Fixed
Revert unintentional change to default multichannel behavior introduced in v0.19.0 for skimage.restoration.cycle_spin (now defaults to single channel again)
Fix corner case with an optimal angle of 0 degrees in hough_line_peaks
Fixed the gallery example involving registration with log-polar transformations
Update test suite for compatibility with the most recent tifffile release.
warp/rotate: fixed a bug with clipping when cval is not in the input range
Fix computation of histogram bins for multichannel integer-valued images
General Maintenance
Update skimage.future.manual_polygon_segmentation to work with Matplotlib 3.5.
Update skimage.io.imread to avoid warnings when using imageio>=2.16.2.
Now compatible with Pillow >= 9.1 (palette may contain <256 entries)
Added support for NumPy 1.23
Pull Requests Included
Backport PR #6306 on branch v0.19.x (Fix for error in 'Using Polar and Log-Polar Transformations for Registration') (#6312)
Backport PR #6271 on branch v0.19.x (hough_line_peaks fix for corner case with optimal angle=0) (#6313)
Backport PR #6261 on branch v0.19.x (Ignore sparse matrix deprecation warning) (#6316)
backport PR 6328: Fix issue with newer versions of matplotlib in manual segmentation (#6334)
Backport PR #6343 on branch v0.19.x (avoid warnings about change to v3 API from imageio) (#6344)
Backport PR #6355 on branch v0.19.x (remove use of deprecated kwargs from test_tifffile_kwarg_passthrough) (#6357)
Backport PR #6352 on branch v0.19.x (Fix channel_axis default for cycle_spin) (#6358)
Backport PR #6348 on branch v0.19.x (Fix smoothed image computation when mask is None in canny) (#6359)
Backport PR #6361 on branch v0.19.x (Document support for Path objects in io functions) (#6363)
Backport PR #6400 on branch v0.19.x (Add support for NumPy 1.23) (#6403)
Backport PR #6335 on branch v0.19.x (warp/rotate: fixed a bug with clipping when cval is not in the input range) (#6411)
Backport PR #6413 on branch v0.19.x (Fix computation of histogram bins for multichannel integer-valued images) (#6414)
0.19.2
Pull Requests Included
fix mistake in tests.yml made during backport (gh-6129)
Backport PR #6145 on branch v0.19.x (Fix channel_axis handling in pyramid_gaussian and pyramid_laplace) (gh-6155)
Backport PR #6130 on branch v0.19.x (bump deprecated Azure windows environment) (gh-6131)
Backport PR #6148 on branch v0.19.x (deprecate n_iter_max (should be max_num_iter)) (gh-6156)
Backport PR #6152 on branch v0.19.x (specify python version used by mybinder.org for gallery demos) (gh-6157)
Backport PR #6139 on branch v0.19.x (fix phase_cross_correlation typo) (gh-6158)
Backport PR #6133 on branch v0.19.x (Update user warning message for viewer module.) (gh-6159)
Backport PR #6169 on branch v0.19.x (Fix unintended change to output dtype of match_histograms) (gh-6172)
Backport PR #6184 on branch v0.19.x (Fix SIFT wrong octave indices + typo) (gh-6186)
Backport PR #6191 on branch v0.19.x (Fix issue6190 - inconsistent default parameters in pyramids.py) (gh-6193)
Backport PR #6207 on branch v0.19.x (Always set params to nan when ProjectiveTransform.estimate fails) (gh-6210)
Backport PR #5262 on branch v0.19.x (Add textbook-like tutorial on measuring fluorescence at nuclear envelope.) (gh-6213)
Backport PR #6087 on branch v0.19.x (Add two datasets for use in upcoming scientific tutorials.) (gh-6215)
Backport PR #6214 on branch v0.19.x (EuclideanTransform.estimate should return False when NaNs are present) (gh-6221)
Backport PR #6219 on branch v0.19.x (Allow the output_shape argument to be any iterable for resize and resize_local_mean) (gh-6222)
Backport PR #6223 on branch v0.19.x (Update filename in testing instructions.) (gh-6225)
Backport PR #6231 on branch v0.19.x (Update imports/refs from deprecated scipy.ndimage.filters namespace) (gh-6233)
Backport PR #6229 on branch v0.19.x (Remove redundant testing on Appveyor) (gh-6234)
Backport PR #6183 on branch v0.19.x (Fix decorators warnings stacklevel) (gh-6238)
Backport PR #6239 on branch v0.19.x (DOC: fix SciPy intersphinx) (gh-6241)
Backport PR #6232 on branch v0.19.x (Include Cython sources via package_data) (gh-6244)
Backport PR #6227 on branch v0.19.x (Fix calculation of Z normal in marching cubes) (gh-6245)
Backport PR #6242 on branch v0.19.x (Fix bug in SLIC superpixels with enforce_connectivity=True and start_label > 0) (gh-6246)
Backport PR #6211 on branch v0.19.x (PiecewiseAffineTransform.estimate return should reflect underlying transforms) gh-6247
update MacOS libomp installation in wheel building script (gh-6249)
0.19.3
Bugs Fixed
Revert unintentional change to default multichannel behavior introduced in v0.19.0 for skimage.restoration.cycle_spin (now defaults to single channel again)
Fix corner case with an optimal angle of 0 degrees in hough_line_peaks
Fixed the gallery example involving registration with log-polar transformations
Update test suite for compatibility with the most recent tifffile release.
warp/rotate: fixed a bug with clipping when cval is not in the input range
Fix computation of histogram bins for multichannel integer-valued images
General Maintenance
Update skimage.future.manual_polygon_segmentation to work with Matplotlib 3.5.
Update skimage.io.imread to avoid warnings when using imageio>=2.16.2.
Now compatible with Pillow >= 9.1 (palette may contain <256 entries)
Added support for NumPy 1.23
Pull Requests Included
Backport PR #6306 on branch v0.19.x (Fix for error in 'Using Polar and Log-Polar Transformations for Registration') (#6312)
Backport PR #6271 on branch v0.19.x (hough_line_peaks fix for corner case with optimal angle=0) (#6313)
Backport PR #6261 on branch v0.19.x (Ignore sparse matrix deprecation warning) (#6316)
backport PR 6328: Fix issue with newer versions of matplotlib in manual segmentation (#6334)
Backport PR #6343 on branch v0.19.x (avoid warnings about change to v3 API from imageio) (#6344)
Backport PR #6355 on branch v0.19.x (remove use of deprecated kwargs from test_tifffile_kwarg_passthrough) (#6357)
Backport PR #6352 on branch v0.19.x (Fix channel_axis default for cycle_spin) (#6358)
Backport PR #6348 on branch v0.19.x (Fix smoothed image computation when mask is None in canny) (#6359)
Backport PR #6361 on branch v0.19.x (Document support for Path objects in io functions) (#6363)
Backport PR #6400 on branch v0.19.x (Add support for NumPy 1.23) (#6403)
Backport PR #6335 on branch v0.19.x (warp/rotate: fixed a bug with clipping when cval is not in the input range) (#6411)
Backport PR #6413 on branch v0.19.x (Fix computation of histogram bins for multichannel integer-valued images) (#6414)
0.19.2
Pull Requests Included
fix mistake in tests.yml made during backport (gh-6129)
Backport PR #6145 on branch v0.19.x (Fix channel_axis handling in pyramid_gaussian and pyramid_laplace) (gh-6155)
Backport PR #6130 on branch v0.19.x (bump deprecated Azure windows environment) (gh-6131)
Backport PR #6148 on branch v0.19.x (deprecate n_iter_max (should be max_num_iter)) (gh-6156)
Backport PR #6152 on branch v0.19.x (specify python version used by mybinder.org for gallery demos) (gh-6157)
Backport PR #6139 on branch v0.19.x (fix phase_cross_correlation typo) (gh-6158)
Backport PR #6133 on branch v0.19.x (Update user warning message for viewer module.) (gh-6159)
Backport PR #6169 on branch v0.19.x (Fix unintended change to output dtype of match_histograms) (gh-6172)
Backport PR #6184 on branch v0.19.x (Fix SIFT wrong octave indices + typo) (gh-6186)
Backport PR #6191 on branch v0.19.x (Fix issue6190 - inconsistent default parameters in pyramids.py) (gh-6193)
Backport PR #6207 on branch v0.19.x (Always set params to nan when ProjectiveTransform.estimate fails) (gh-6210)
Backport PR #5262 on branch v0.19.x (Add textbook-like tutorial on measuring fluorescence at nuclear envelope.) (gh-6213)
Backport PR #6087 on branch v0.19.x (Add two datasets for use in upcoming scientific tutorials.) (gh-6215)
Backport PR #6214 on branch v0.19.x (EuclideanTransform.estimate should return False when NaNs are present) (gh-6221)
Backport PR #6219 on branch v0.19.x (Allow the output_shape argument to be any iterable for resize and resize_local_mean) (gh-6222)
Backport PR #6223 on branch v0.19.x (Update filename in testing instructions.) (gh-6225)
Backport PR #6231 on branch v0.19.x (Update imports/refs from deprecated scipy.ndimage.filters namespace) (gh-6233)
Backport PR #6229 on branch v0.19.x (Remove redundant testing on Appveyor) (gh-6234)
Backport PR #6183 on branch v0.19.x (Fix decorators warnings stacklevel) (gh-6238)
Backport PR #6239 on branch v0.19.x (DOC: fix SciPy intersphinx) (gh-6241)
Backport PR #6232 on branch v0.19.x (Include Cython sources via package_data) (gh-6244)
Backport PR #6227 on branch v0.19.x (Fix calculation of Z normal in marching cubes) (gh-6245)
Backport PR #6242 on branch v0.19.x (Fix bug in SLIC superpixels with enforce_connectivity=True and start_label > 0) (gh-6246)
Backport PR #6211 on branch v0.19.x (PiecewiseAffineTransform.estimate return should reflect underlying transforms) gh-6247
update MacOS libomp installation in wheel building script (gh-6249)
0.19.3
Bugs Fixed
Revert unintentional change to default multichannel behavior introduced in v0.19.0 for skimage.restoration.cycle_spin (now defaults to single channel again)
Fix corner case with an optimal angle of 0 degrees in hough_line_peaks
Fixed the gallery example involving registration with log-polar transformations
Update test suite for compatibility with the most recent tifffile release.
warp/rotate: fixed a bug with clipping when cval is not in the input range
Fix computation of histogram bins for multichannel integer-valued images
General Maintenance
Update skimage.future.manual_polygon_segmentation to work with Matplotlib 3.5.
Update skimage.io.imread to avoid warnings when using imageio>=2.16.2.
Now compatible with Pillow >= 9.1 (palette may contain <256 entries)
Added support for NumPy 1.23
Pull Requests Included
Backport PR #6306 on branch v0.19.x (Fix for error in 'Using Polar and Log-Polar Transformations for Registration') (#6312)
Backport PR #6271 on branch v0.19.x (hough_line_peaks fix for corner case with optimal angle=0) (#6313)
Backport PR #6261 on branch v0.19.x (Ignore sparse matrix deprecation warning) (#6316)
backport PR 6328: Fix issue with newer versions of matplotlib in manual segmentation (#6334)
Backport PR #6343 on branch v0.19.x (avoid warnings about change to v3 API from imageio) (#6344)
Backport PR #6355 on branch v0.19.x (remove use of deprecated kwargs from test_tifffile_kwarg_passthrough) (#6357)
Backport PR #6352 on branch v0.19.x (Fix channel_axis default for cycle_spin) (#6358)
Backport PR #6348 on branch v0.19.x (Fix smoothed image computation when mask is None in canny) (#6359)
Backport PR #6361 on branch v0.19.x (Document support for Path objects in io functions) (#6363)
Backport PR #6400 on branch v0.19.x (Add support for NumPy 1.23) (#6403)
Backport PR #6335 on branch v0.19.x (warp/rotate: fixed a bug with clipping when cval is not in the input range) (#6411)
Backport PR #6413 on branch v0.19.x (Fix computation of histogram bins for multichannel integer-valued images) (#6414)
0.19.2
Pull Requests Included
fix mistake in tests.yml made during backport (gh-6129)
Backport PR #6145 on branch v0.19.x (Fix channel_axis handling in pyramid_gaussian and pyramid_laplace) (gh-6155)
Backport PR #6130 on branch v0.19.x (bump deprecated Azure windows environment) (gh-6131)
Backport PR #6148 on branch v0.19.x (deprecate n_iter_max (should be max_num_iter)) (gh-6156)
Backport PR #6152 on branch v0.19.x (specify python version used by mybinder.org for gallery demos) (gh-6157)
Backport PR #6139 on branch v0.19.x (fix phase_cross_correlation typo) (gh-6158)
Backport PR #6133 on branch v0.19.x (Update user warning message for viewer module.) (gh-6159)
Backport PR #6169 on branch v0.19.x (Fix unintended change to output dtype of match_histograms) (gh-6172)
Backport PR #6184 on branch v0.19.x (Fix SIFT wrong octave indices + typo) (gh-6186)
Backport PR #6191 on branch v0.19.x (Fix issue6190 - inconsistent default parameters in pyramids.py) (gh-6193)
Backport PR #6207 on branch v0.19.x (Always set params to nan when ProjectiveTransform.estimate fails) (gh-6210)
Backport PR #5262 on branch v0.19.x (Add textbook-like tutorial on measuring fluorescence at nuclear envelope.) (gh-6213)
Backport PR #6087 on branch v0.19.x (Add two datasets for use in upcoming scientific tutorials.) (gh-6215)
Backport PR #6214 on branch v0.19.x (EuclideanTransform.estimate should return False when NaNs are present) (gh-6221)
Backport PR #6219 on branch v0.19.x (Allow the output_shape argument to be any iterable for resize and resize_local_mean) (gh-6222)
Backport PR #6223 on branch v0.19.x (Update filename in testing instructions.) (gh-6225)
Backport PR #6231 on branch v0.19.x (Update imports/refs from deprecated scipy.ndimage.filters namespace) (gh-6233)
Backport PR #6229 on branch v0.19.x (Remove redundant testing on Appveyor) (gh-6234)
Backport PR #6183 on branch v0.19.x (Fix decorators warnings stacklevel) (gh-6238)
Backport PR #6239 on branch v0.19.x (DOC: fix SciPy intersphinx) (gh-6241)
Backport PR #6232 on branch v0.19.x (Include Cython sources via package_data) (gh-6244)
Backport PR #6227 on branch v0.19.x (Fix calculation of Z normal in marching cubes) (gh-6245)
Backport PR #6242 on branch v0.19.x (Fix bug in SLIC superpixels with enforce_connectivity=True and start_label > 0) (gh-6246)
Backport PR #6211 on branch v0.19.x (PiecewiseAffineTransform.estimate return should reflect underlying transforms) gh-6247
update MacOS libomp installation in wheel building script (gh-6249)
0.19.3
Bugs Fixed
Revert unintentional change to default multichannel behavior introduced in v0.19.0 for skimage.restoration.cycle_spin (now defaults to single channel again)
Fix corner case with an optimal angle of 0 degrees in hough_line_peaks
Fixed the gallery example involving registration with log-polar transformations
Update test suite for compatibility with the most recent tifffile release.
warp/rotate: fixed a bug with clipping when cval is not in the input range
Fix computation of histogram bins for multichannel integer-valued images
General Maintenance
Update skimage.future.manual_polygon_segmentation to work with Matplotlib 3.5.
Update skimage.io.imread to avoid warnings when using imageio>=2.16.2.
Now compatible with Pillow >= 9.1 (palette may contain <256 entries)
Added support for NumPy 1.23
Pull Requests Included
Backport PR #6306 on branch v0.19.x (Fix for error in 'Using Polar and Log-Polar Transformations for Registration') (#6312)
Backport PR #6271 on branch v0.19.x (hough_line_peaks fix for corner case with optimal angle=0) (#6313)
Backport PR #6261 on branch v0.19.x (Ignore sparse matrix deprecation warning) (#6316)
backport PR 6328: Fix issue with newer versions of matplotlib in manual segmentation (#6334)
Backport PR #6343 on branch v0.19.x (avoid warnings about change to v3 API from imageio) (#6344)
Backport PR #6355 on branch v0.19.x (remove use of deprecated kwargs from test_tifffile_kwarg_passthrough) (#6357)
Backport PR #6352 on branch v0.19.x (Fix channel_axis default for cycle_spin) (#6358)
Backport PR #6348 on branch v0.19.x (Fix smoothed image computation when mask is None in canny) (#6359)
Backport PR #6361 on branch v0.19.x (Document support for Path objects in io functions) (#6363)
Backport PR #6400 on branch v0.19.x (Add support for NumPy 1.23) (#6403)
Backport PR #6335 on branch v0.19.x (warp/rotate: fixed a bug with clipping when cval is not in the input range) (#6411)
Backport PR #6413 on branch v0.19.x (Fix computation of histogram bins for multichannel integer-valued images) (#6414)
0.19.2
Pull Requests Included
fix mistake in tests.yml made during backport (gh-6129)
Backport PR #6145 on branch v0.19.x (Fix channel_axis handling in pyramid_gaussian and pyramid_laplace) (gh-6155)
Backport PR #6130 on branch v0.19.x (bump deprecated Azure windows environment) (gh-6131)
Backport PR #6148 on branch v0.19.x (deprecate n_iter_max (should be max_num_iter)) (gh-6156)
Backport PR #6152 on branch v0.19.x (specify python version used by mybinder.org for gallery demos) (gh-6157)
Backport PR #6139 on branch v0.19.x (fix phase_cross_correlation typo) (gh-6158)
Backport PR #6133 on branch v0.19.x (Update user warning message for viewer module.) (gh-6159)
Backport PR #6169 on branch v0.19.x (Fix unintended change to output dtype of match_histograms) (gh-6172)
Backport PR #6184 on branch v0.19.x (Fix SIFT wrong octave indices + typo) (gh-6186)
Backport PR #6191 on branch v0.19.x (Fix issue6190 - inconsistent default parameters in pyramids.py) (gh-6193)
Backport PR #6207 on branch v0.19.x (Always set params to nan when ProjectiveTransform.estimate fails) (gh-6210)
Backport PR #5262 on branch v0.19.x (Add textbook-like tutorial on measuring fluorescence at nuclear envelope.) (gh-6213)
Backport PR #6087 on branch v0.19.x (Add two datasets for use in upcoming scientific tutorials.) (gh-6215)
Backport PR #6214 on branch v0.19.x (EuclideanTransform.estimate should return False when NaNs are present) (gh-6221)
Backport PR #6219 on branch v0.19.x (Allow the output_shape argument to be any iterable for resize and resize_local_mean) (gh-6222)
Backport PR #6223 on branch v0.19.x (Update filename in testing instructions.) (gh-6225)
Backport PR #6231 on branch v0.19.x (Update imports/refs from deprecated scipy.ndimage.filters namespace) (gh-6233)
Backport PR #6229 on branch v0.19.x (Remove redundant testing on Appveyor) (gh-6234)
Backport PR #6183 on branch v0.19.x (Fix decorators warnings stacklevel) (gh-6238)
Backport PR #6239 on branch v0.19.x (DOC: fix SciPy intersphinx) (gh-6241)
Backport PR #6232 on branch v0.19.x (Include Cython sources via package_data) (gh-6244)
Backport PR #6227 on branch v0.19.x (Fix calculation of Z normal in marching cubes) (gh-6245)
Backport PR #6242 on branch v0.19.x (Fix bug in SLIC superpixels with enforce_connectivity=True and start_label > 0) (gh-6246)
Backport PR #6211 on branch v0.19.x (PiecewiseAffineTransform.estimate return should reflect underlying transforms) gh-6247
update MacOS libomp installation in wheel building script (gh-6249)
0.19.3
Bugs Fixed
Revert unintentional change to default multichannel behavior introduced in v0.19.0 for skimage.restoration.cycle_spin (now defaults to single channel again)
Fix corner case with an optimal angle of 0 degrees in hough_line_peaks
Fixed the gallery example involving registration with log-polar transformations
Update test suite for compatibility with the most recent tifffile release.
warp/rotate: fixed a bug with clipping when cval is not in the input range
Fix computation of histogram bins for multichannel integer-valued images
General Maintenance
Update skimage.future.manual_polygon_segmentation to work with Matplotlib 3.5.
Update skimage.io.imread to avoid warnings when using imageio>=2.16.2.
Now compatible with Pillow >= 9.1 (palette may contain <256 entries)
Added support for NumPy 1.23
Pull Requests Included
Backport PR #6306 on branch v0.19.x (Fix for error in 'Using Polar and Log-Polar Transformations for Registration') (#6312)
Backport PR #6271 on branch v0.19.x (hough_line_peaks fix for corner case with optimal angle=0) (#6313)
Backport PR #6261 on branch v0.19.x (Ignore sparse matrix deprecation warning) (#6316)
backport PR 6328: Fix issue with newer versions of matplotlib in manual segmentation (#6334)
Backport PR #6343 on branch v0.19.x (avoid warnings about change to v3 API from imageio) (#6344)
Backport PR #6355 on branch v0.19.x (remove use of deprecated kwargs from test_tifffile_kwarg_passthrough) (#6357)
Backport PR #6352 on branch v0.19.x (Fix channel_axis default for cycle_spin) (#6358)
Backport PR #6348 on branch v0.19.x (Fix smoothed image computation when mask is None in canny) (#6359)
Backport PR #6361 on branch v0.19.x (Document support for Path objects in io functions) (#6363)
Backport PR #6400 on branch v0.19.x (Add support for NumPy 1.23) (#6403)
Backport PR #6335 on branch v0.19.x (warp/rotate: fixed a bug with clipping when cval is not in the input range) (#6411)
Backport PR #6413 on branch v0.19.x (Fix computation of histogram bins for multichannel integer-valued images) (#6414)
0.19.2
Pull Requests Included
fix mistake in tests.yml made during backport (gh-6129)
Backport PR #6145 on branch v0.19.x (Fix channel_axis handling in pyramid_gaussian and pyramid_laplace) (gh-6155)
Backport PR #6130 on branch v0.19.x (bump deprecated Azure windows environment) (gh-6131)
Backport PR #6148 on branch v0.19.x (deprecate n_iter_max (should be max_num_iter)) (gh-6156)
Backport PR #6152 on branch v0.19.x (specify python version used by mybinder.org for gallery demos) (gh-6157)
Backport PR #6139 on branch v0.19.x (fix phase_cross_correlation typo) (gh-6158)
Backport PR #6133 on branch v0.19.x (Update user warning message for viewer module.) (gh-6159)
Backport PR #6169 on branch v0.19.x (Fix unintended change to output dtype of match_histograms) (gh-6172)
Backport PR #6184 on branch v0.19.x (Fix SIFT wrong octave indices + typo) (gh-6186)
Backport PR #6191 on branch v0.19.x (Fix issue6190 - inconsistent default parameters in pyramids.py) (gh-6193)
Backport PR #6207 on branch v0.19.x (Always set params to nan when ProjectiveTransform.estimate fails) (gh-6210)
Backport PR #5262 on branch v0.19.x (Add textbook-like tutorial on measuring fluorescence at nuclear envelope.) (gh-6213)
Backport PR #6087 on branch v0.19.x (Add two datasets for use in upcoming scientific tutorials.) (gh-6215)
Backport PR #6214 on branch v0.19.x (EuclideanTransform.estimate should return False when NaNs are present) (gh-6221)
Backport PR #6219 on branch v0.19.x (Allow the output_shape argument to be any iterable for resize and resize_local_mean) (gh-6222)
Backport PR #6223 on branch v0.19.x (Update filename in testing instructions.) (gh-6225)
Backport PR #6231 on branch v0.19.x (Update imports/refs from deprecated scipy.ndimage.filters namespace) (gh-6233)
Backport PR #6229 on branch v0.19.x (Remove redundant testing on Appveyor) (gh-6234)
Backport PR #6183 on branch v0.19.x (Fix decorators warnings stacklevel) (gh-6238)
Backport PR #6239 on branch v0.19.x (DOC: fix SciPy intersphinx) (gh-6241)
Backport PR #6232 on branch v0.19.x (Include Cython sources via package_data) (gh-6244)
Backport PR #6227 on branch v0.19.x (Fix calculation of Z normal in marching cubes) (gh-6245)
Backport PR #6242 on branch v0.19.x (Fix bug in SLIC superpixels with enforce_connectivity=True and start_label > 0) (gh-6246)
Backport PR #6211 on branch v0.19.x (PiecewiseAffineTransform.estimate return should reflect underlying transforms) gh-6247
update MacOS libomp installation in wheel building script (gh-6249)
0.19.3
Bugs Fixed
Revert unintentional change to default multichannel behavior introduced in v0.19.0 for skimage.restoration.cycle_spin (now defaults to single channel again)
Fix corner case with an optimal angle of 0 degrees in hough_line_peaks
Fixed the gallery example involving registration with log-polar transformations
Update test suite for compatibility with the most recent tifffile release.
warp/rotate: fixed a bug with clipping when cval is not in the input range
Fix computation of histogram bins for multichannel integer-valued images
General Maintenance
Update skimage.future.manual_polygon_segmentation to work with Matplotlib 3.5.
Update skimage.io.imread to avoid warnings when using imageio>=2.16.2.
Now compatible with Pillow >= 9.1 (palette may contain <256 entries)
Added support for NumPy 1.23
Pull Requests Included
Backport PR #6306 on branch v0.19.x (Fix for error in 'Using Polar and Log-Polar Transformations for Registration') (#6312)
Backport PR #6271 on branch v0.19.x (hough_line_peaks fix for corner case with optimal angle=0) (#6313)
Backport PR #6261 on branch v0.19.x (Ignore sparse matrix deprecation warning) (#6316)
backport PR 6328: Fix issue with newer versions of matplotlib in manual segmentation (#6334)
Backport PR #6343 on branch v0.19.x (avoid warnings about change to v3 API from imageio) (#6344)
Backport PR #6355 on branch v0.19.x (remove use of deprecated kwargs from test_tifffile_kwarg_passthrough) (#6357)
Backport PR #6352 on branch v0.19.x (Fix channel_axis default for cycle_spin) (#6358)
Backport PR #6348 on branch v0.19.x (Fix smoothed image computation when mask is None in canny) (#6359)
Backport PR #6361 on branch v0.19.x (Document support for Path objects in io functions) (#6363)
Backport PR #6400 on branch v0.19.x (Add support for NumPy 1.23) (#6403)
Backport PR #6335 on branch v0.19.x (warp/rotate: fixed a bug with clipping when cval is not in the input range) (#6411)
Backport PR #6413 on branch v0.19.x (Fix computation of histogram bins for multichannel integer-valued images) (#6414)
0.19.2
Pull Requests Included
fix mistake in tests.yml made during backport (gh-6129)
Backport PR #6145 on branch v0.19.x (Fix channel_axis handling in pyramid_gaussian and pyramid_laplace) (gh-6155)
Backport PR #6130 on branch v0.19.x (bump deprecated Azure windows environment) (gh-6131)
Backport PR #6148 on branch v0.19.x (deprecate n_iter_max (should be max_num_iter)) (gh-6156)
Backport PR #6152 on branch v0.19.x (specify python version used by mybinder.org for gallery demos) (gh-6157)
Backport PR #6139 on branch v0.19.x (fix phase_cross_correlation typo) (gh-6158)
Backport PR #6133 on branch v0.19.x (Update user warning message for viewer module.) (gh-6159)
Backport PR #6169 on branch v0.19.x (Fix unintended change to output dtype of match_histograms) (gh-6172)
Backport PR #6184 on branch v0.19.x (Fix SIFT wrong octave indices + typo) (gh-6186)
Backport PR #6191 on branch v0.19.x (Fix issue6190 - inconsistent default parameters in pyramids.py) (gh-6193)
Backport PR #6207 on branch v0.19.x (Always set params to nan when ProjectiveTransform.estimate fails) (gh-6210)
Backport PR #5262 on branch v0.19.x (Add textbook-like tutorial on measuring fluorescence at nuclear envelope.) (gh-6213)
Backport PR #6087 on branch v0.19.x (Add two datasets for use in upcoming scientific tutorials.) (gh-6215)
Backport PR #6214 on branch v0.19.x (EuclideanTransform.estimate should return False when NaNs are present) (gh-6221)
Backport PR #6219 on branch v0.19.x (Allow the output_shape argument to be any iterable for resize and resize_local_mean) (gh-6222)
Backport PR #6223 on branch v0.19.x (Update filename in testing instructions.) (gh-6225)
Backport PR #6231 on branch v0.19.x (Update imports/refs from deprecated scipy.ndimage.filters namespace) (gh-6233)
Backport PR #6229 on branch v0.19.x (Remove redundant testing on Appveyor) (gh-6234)
Backport PR #6183 on branch v0.19.x (Fix decorators warnings stacklevel) (gh-6238)
Backport PR #6239 on branch v0.19.x (DOC: fix SciPy intersphinx) (gh-6241)
Backport PR #6232 on branch v0.19.x (Include Cython sources via package_data) (gh-6244)
Backport PR #6227 on branch v0.19.x (Fix calculation of Z normal in marching cubes) (gh-6245)
Backport PR #6242 on branch v0.19.x (Fix bug in SLIC superpixels with enforce_connectivity=True and start_label > 0) (gh-6246)
Backport PR #6211 on branch v0.19.x (PiecewiseAffineTransform.estimate return should reflect underlying transforms) gh-6247
update MacOS libomp installation in wheel building script (gh-6249)
0.19.1
Pull Requests Included
Backport PR #6097 on branch v0.19.x (Restore non-underscore functions in skimage.data) (gh-6099)
Backport PR #6095 on branch v0.19.x (Preserve backwards compatibility for channel_axis parameter in transform functions) (gh-6100)
Backport PR #6103 on branch v0.19.x (Make rank filter test comparisons robust across architectures) (gh-6106)
Backport PR #6105 on branch v0.19.x (Pass a specific random_state into ransac in test_ransac_geometric) (gh-6107)
Fix two equality comparison bugs in the wheel build script (gh-6098)
Backport of gh-6109 (Add linker flags to strip debug symbols during wheel building) (gh-6110)
Pin setuptools maximum in v0.19.x to avoid breaking on planned distutils API changes (gh-6112)
Avoid potential circular import of rgb2gray (gh-6113)
Backport PR #6089 on branch v0.19.x (Skip tests requiring fetched data) (gh-6115)
Backport PR #6118 on branch v0.19.x (Fixes to tests.yml and fixes for expected warnings) (gh-6127)
Backport PR #6114 on branch v0.19.x (Relax test condition to make it more robust to variable CI load) (gh-6128)
0.19.0
A highlight of this release is the addition of the popular
scale-invariant feature transform (SIFT) feature detector and
descriptor. This release also introduces a perceptual blur metric,
new pixel graph algorithms, and most functions now operate in
single-precision when single-precision inputs are provided. Many
other bug fixes, enhancements and performance improvements are
detailed below.
A significant change in this release is in the treatment of
multichannel images. The existing multichannel argument to functions
has been deprecated in favor of a new channel_axis argument.
channel_axis can be used to specify which axis of an array contains
channel information (with channel_axis=None indicating a grayscale
image).
scikit-image now uses "lazy loading", which enables users to access
the functions from all skimage submodules without the overhead of
eagerly importing all submodules. As a concrete example, after
calling "import skimage" a user can directly call a function such
as skimage.transform.warp whereas previously it would have been
required to first "import skimage.transform".
An exciting change on the development side is the introduction of
support for Pythran as an alternative to Cython for generating
compiled code. We plan to keep Cython support as well going forward,
so developers are free to use either one as appropriate.
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All checksums have been double-checked against existing RMD160 and
SHA512 hashes
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This is a bug fix release and contains the following two bug fixes:
* Fix indexing error for labelling in large (>2GB) arrays
* Only use retry_if_failed with recent pooch
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Release note is here:
https://github.com/scikit-image/scikit-image/blob/master/doc/release/release_0.18.rst
(Note: the category should be graphics instead of math)
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scikit-image 0.15.0
We're happy to announce the release of scikit-image v0.15.0!
scikit-image is an image processing toolbox for SciPy that includes algorithms for segmentation, geometric transformations, color space manipulation, analysis, filtering, morphology, feature detection, and more.
0.15 is the first scikit-image release that is only compatible with Python 3.5 and above. Python 2.7 users should strongly consider upgrading to Python 3.5+, or use the 0.14 long term support releases.
New Features
N-dimensional flood fill, with tolerance
Attribute operators
Extension of register_translation to enable subpixel precision in 3D and optionally disable error calculation
unsharp mask filtering
New options connectivity, indices and allow_borders for skimage.morphology.local_maxima and local_minima.
Image translation registration for masked data (skimage.feature.masked_register_translation)
Frangi (vesselness), Meijering (neuriteness), and Sato (tubeness) filters
Allow float->float conversion of any range
Let lower precision float arrays pass through img_as_float
Lazy apply_parallel (allows optimization of dask array operations)
Add range option for histogram.
Add histogram matching
Improvements
Replace morphology.local_maxima with faster flood-fill based Cython version
skivi is now using qtpy for Qt4/Qt5/PySide/PySide2 compatibility (a new optional dependency).
Performance is now monitored by Airspeed Velocity. Benchmark results will appear at https://pandas.pydata.org/speed/
Speed up inner loop of GLCM
Allow tuple to define kernel in threshold_niblack and threshold_sauvola
Add support for anisotropic blob detection in blob_log and blob_dog
API Changes
skimage.transform.seam_carve has been removed because the algorithm is patented.
Parameter dynamic_range in skimage.measure.compare_psnr has been removed. Use parameter data_range instead.
imageio is now the preferred plugin for reading and writing images.
imageio is now a dependency of scikit-image.
regular_grid now returns a tuple instead of a list for compatibility with numpy 1.15
colorconv.separate_stains and colorconv.combine_stains now uses base10 instead of the natural logarithm as discussed in issue 2995.
Default value of clip_negative parameter in skimage.util.dtype_limits has been set to False.
Default value of circle parameter in skimage.transform.radon has been set to True.
Default value of circle parameter in skimage.transform.iradon has been set to True.
Default value of mode parameter in skimage.transform.swirl has been set to reflect.
Deprecated skimage.filters.threshold_adaptive has been removed. Use skimage.filters.threshold_local instead.
Default value of multichannel parameter in skimage.restoration.denoise_bilateral has been set to False.
Default value of multichannel parameter in skimage.restoration.denoise_nl_means has been set to False.
Default value of mode parameter in skimage.transform.resize and skimage.transform.rescale has been set to reflect.
Default value of anti_aliasing parameter in skimage.transform.resize and skimage.transform.rescale has been set to True.
Removed the skimage.test function. This functionality can be achieved by calling pytest directly.
morphology.local_maxima now returns a boolean array
Bugfixes
Correct bright ridge detection for Frangi filter
skimage.morphology.local_maxima and skimage.morphology.local_minima no longer raise an error if any dimension of the image is smaller 3 and the keyword allow_borders was false.
skimage.morphology.local_maxima and skimage.morphology.local_minima will return a boolean array instead of an array of 0s and 1s if the parameter indices was false.
When compare_ssim is used with gaussian_weights set to True, the boundary crop used when computing the mean structural similarity will now exactly match the width of the Gaussian used. The Gaussian filter window is also now truncated at 3.5 rather than 4.0 standard deviations to exactly match the original publication on the SSIM. These changes should produce only a very small change in the computed SSIM value. There is no change to the existing behavior when gaussian_weights is False.
erroneous use of cython wrap around
Speed up block reduce by providing the appropriate parameters to numpy
Add urllib.request again
Repeat pixels in reflect mode when image has dimension 1
Improve Li thresholding
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This release contains the following changes from 0.14.0:
Enhancements
* "Reflect" mode in transforms now works fine when an image dimension has
size 1
* img_as_float now allows single-precision (32-bit) float arrays to pass
through unmodified, rather than being up-converted to 64-bit
* Speed up rgb2gray computation
* The scikit-image viewer now works with different PyQt versions
* The cycle_spin function for enhanced denoising works single-threaded when
dask is not installed now
* scikit-image's io module will no longer inadvertently set the matplotlib
backend when imported
* Fix deprecated get keyword from dask in favor of scheduler
* Add missing cval parameter to threshold_local
API changes
* Remove deprecated dynamic_range in measure.compare_psnr
0.14.0
New Features
* Lookfor function to search across the library: skimage.lookfor.
* nD support for skimage.transform.rescale, skimage.transform.resize,
and skimage.transform.pyramid_* transforms.
* Chan-Vese segmentation algorithm.
* Manual segmentation with matplotlib for fast data annotation:
skimage.future.manual_polygon_segmentation,
skimage.future.manual_lasso_segmentation.
* Hysteresis thresholding: skimage.filters.apply_hysteresis_threshold.
* Segmentation with morphological snakes:
skimage.segmentation.morphological_chan_vese (2D),
skimage.segmentation.morphological_geodesic_active_contour (2D and 3D).
* nD support for image moments: skimage.measure.moments_central,
skimage.measure.moments_central, skimage.measure.moments_normalized,
skimage.measure.moments_hu. This change leads to 3D/nD compatibility
for many regionprops.
* Image moments from coordinate input: skimage.measure.moments_coords,
skimage.measure.moments_coords_central.
* Added 3D support to blob_dog and blob_log.
* Inertia tensor and its eigenvalues can now be computed outside of
regionprops; available in skimage.measure.inertia_tensor.
* Cycle-spinning function for approximating shift-invariance by averaging
results from a series of spatial shifts: skimage.restoration.cycle_spin.
* Haar-like feature: skimage.feature.haar_like_feature,
skimage.feature.haar_like_feature_coord,
skimage.feature.draw_haar_like_feature.
* Data generation with random_shapes function: skimage.draw.random_shapes.
* Subset of LFW (Labeled Faces in the Wild) database:
skimage.data.cbcl_face_database.
* Fully reworked montage function (now with a better padding behavior):
skimage.util.montage.
* YDbDr colorspace conversion routines: skimage.color.rgb2ydbdr,
skimage.color.ydbdr2rgb.
Improvements
* VisuShrink method for skimage.restoration.denoise_wavelet.
* New max_ratio parameter for skimage.feature.match_descriptors.
* skimage.transform.resize and skimage.transform.rescale have a new
anti_aliasing option to avoid aliasing artifacts when down-sampling images.
* Support for multichannel images for skimage.feature.hog.
* Non-local means denoising (skimage.restoration.denoise_nl_means) has a new
optional parameter, sigma, that can be used to specify the noise standard
deviation. This enables noise-robust patch distance estimation.
* New alignment parameter in skimage.feature.plot_matches.
* New seed parameter in skimage.transform.probabilistic_hough_line.
* Various performance improvements.
API Changes
* skimage.util.montage. namespace has been removed, and
skimage.util.montage.montage2d function is now available as
skimage.util.montage2d.
* skimage.morphology.binary_erosion now uses True as border value, and is
now consistent with skimage.morphology.erosion.
Deprecations
* freeimage plugin has been removed from skimage.io.
* skimage.util.montage2d is deprecated and will be removed in 0.15.
Use skimage.util.montage function instead.
* skimage.novice is deprecated and will be removed in 0.16.
* skimage.transform.resize and skimage.transform.rescale have a new
anti_aliasing option that avoids aliasing artifacts when down-sampling
images. This option will be enabled by default in 0.15.
* regionprops will use row-column coordinates in 0.16.
* skimage.morphology.remove_small_holes min_size argument is deprecated
and will be removed in 0.16. Use area_threshold instead.
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scikit-image is a collection of algorithms for image processing.
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