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3.0.1.
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R-3.0.1.
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o The vignette hwde.Rnw has been modified to add missing text and to
conform to current Sweave markup conventions
o Code for the functions hwde() and make.contrasts() has been modified
so that R CMD check no longer reports "No visible binding for global
variable 'oset'."
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R-3.0.1.
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=== 0.8.9 / 24.08.2013
Author: Doug Renn <renn@nestegg.com>
Date: Fri Aug 23 17:10:24 2013 -0600
* Work around to handle number formats that are being mistaken time formats
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Add missing BUILD_DEPENDS
Upstream changes:
1.07 Thu Jan 19 2012
- synchronised the autoseeding mechanism with that of Math::Random::MT
1.08 Mon May 28 2012
- synchronised the autoseeding mechanism with that of Math::Random::MT that
is more elegant and portable
1.09 Mon Jun 4 2012
- added the irand() function to draw random integers, as in Math::Random::MT
1.10 Mon Aug 6 2012
- made set_seed() return the seed, as does Math::Random::MT
- migrated test suite to Test::More and Test::Number::Delta
1.11
- Improvement of unit tests
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Upstream changes:
6.22 Tue Sep 4 14:06:20 2012
- Enhancement to shuffle() to return an array
6.21 Mon Aug 6 17:27:37 2012
- Haiku does not support non-blocking IO
6.19 Fri Jul 27 00:48:20 2012
- Prevent use of incompatible state vectors
6.18 Thu Jan 26 14:58:57 2012
- Ignore warnings from other modules during tests
6.17 Wed Jan 11 05:55:09 2012
- Require OIO 3.85 to fix some 'used only once' warnings
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Upstream changes:
0.31 2013-08-07
- Change proof certificate documentation to reflect the new text format.
- Some platforms were using __int128 when it wasn't supported. Only
x86_64 and Power64 use it now.
- Small speedup for ranged totient internals.
- Patch MPU::GMP 0.13 giving us not quite what we expected from a small
certificate. Fixed in MPU::GMP 0.14, worked around here regardless.
0.30 2013-08-06
[API Changes]
- Primality proofs now use the new "MPU Certificate" format, which is
text rather than a nested Perl data structure. This is much better
for external interaction, especially with non-Perl tools. It is
not quite as convenient for all-Perl manipulation.
[Functions Added]
- is_frobenius_underwood_pseudoprime
- is_almost_extra_strong_lucas_pseudoprime
- lucas_sequence
- pplus1_factor
[Enhancements]
- Documentation and PP is_prime changed to use extra strong Lucas test
from the strong test. This matches what the newest MPU::GMP does.
This has no effect at all for numbers < 2^64. No counter-example is
known for the standard, strong, extra strong, or almost extra strong
(increment 1 or 2) tests. The extra strong test is faster than the
strong test and produces fewer pseudoprimes. It retains the residue
class properties of the strong Lucas test (where the SPSP-2
pseudoprimes favor residue class 1 and the Lucas pseudoprimes favor
residue class -1), hence should retain the BPSW test strength.
- XS code for all 4 Lucas tests.
- Clean up is_prob_prime, also ~10% faster for n >= 885594169.
- Small mulmod speedup for non-gcc/x86_64 platforms, and for any platform
with gcc 4.4 or newer.
[Bug Fixes]
- Fixed a rare refcount / bignum / callback issue in next_prime.
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changes:
-Improve ODF import
-Export custom shapes
-Implement input message editing
+bugfixes
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========
The cdecimal package is a fast drop-in replacement for the decimal module
in Python's standard library. Both modules provide complete implementations
of Mike Cowlishaw/IBM's General Decimal Arithmetic Specification.
This archive is identical to the mpdecimal package, except that library
tests and documentation have been removed.
For documentation, visit:
http://www.bytereef.org/mpdecimal/index.html
http://www.bytereef.org/mpdecimal/doc/index.html
Contact: Stefan Krah <skrah@bytereef.org>
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Upstream changes:
Changes in version 1.6-1
write.matrix.csr() now accepts a fac argument similar to read.matrix.csr(), writing factor levels instead of the numeric codes.
naiveBayes() uses a numerically more stable formula for calculating the a-posterior probabilities.
predict.naiveBayes() now accepts data with predictors in an order different from the training data, and also ignores variables not in the model (especially the response variable).
svm() checks whether parameters which are passed to the C-code are set to NULL to avoid segfaults.
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plyr is a set of tools that solves a common set of problems: you
need to break a big problem down into manageable pieces, operate
on each pieces and then put all the pieces back together. For example,
you might want to fit a model to each spatial location or time point
in your study, summarise data by panels or collapse high-dimensional
arrays to simpler summary statistics. The development of plyr has
been generously supported by BD (Becton Dickinson).
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Upstream changes:
Version 0.2-7
* Trivial changes (updated package fields, daj)
Version 0.2-6
* Removed deprecated \synopsis in some Rd files (thanks to Prof. Ripley)
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Upstream changes:
Changes to Version 2.0-18
o Bug fix to boot with type="residual"
o Added densityPlot() function.
Changes to Version 2.0-17
o Add a variable to AMSsurvey.
o Fix to residualPlots to compute lack of fit tests with missing values and glms.
o Fix to residualPlots with a 0/1 variable not declared a factor.
o Boxplot() now works properly with at argument passed to boxplot() via ... (contribution of Steve Ellison).
o qqPlot.lm() now works with "aov" objects (fixing problem reported by Thomas Burk).
o Small fixes to code and docs.
Changes to Version 2.0-16
o Fixed bug in printing of hypotheses by linearHypothesis(), where numeric
constants of the form 1.* or -1.* were printed incorrectly (reported by Johannes Kutsam).
o Fixed a bug in showLabels() with multiple groups in the scatterplot() and scatterplotMatrix() function.
o linearHypothesisTest() now tolerates newlines and tabs in hypotheses (suggestion of David Hugh-Jones).
o two bugs fixed in Boot() (found by David Pain) changed argument f to f. in bootCase().
o summary.Boot(), confint.Boot() and hist.Boot() handle aliases correctly.
o Boxplot.formula() now accepts more than one conditioning variable (suggestion of Christina Yassouridis).
O Boxplot() now properly handles at argument passed through via ... to boxplot() (contribution of Steve Ellison).
o Small fixes.
Changes to Version 2.0-15
o Added an argument coef. to linearHypothesis so tests of the linear hypohtesis form can be computed without reference to a fitted model
o Added a linearHypothesis.nlsList method
o Added an nls method for Boot
o Recode() introduced as alias for recode() to avoid name clash with Hmisc.
o residualPlots for glms now ignore starting values for the computing algorithm when computing lack of fit tests; starting values previously caused an error.
o Marginal Model Plots now allow conditioning on a categorical variable.
Changes to Version 2.0-14
o Smoothers now given as arguments to scatterplot(), scatterplotMatrix(), residualPlots() and other functions; gamLine(), loessLine() (default), and quantregLine() smoothers provided.
o linearHypothesis.mer() and Anova.mer() now consistent with pbkrtest version 0.3-2.
o Small changes and fixes.
Changes to Version 2.0-13
o Added point marking (id.n, etc.) to dataEllipse
o Changed the default for id.method with the invTranPlot to "x".
o The ncvTest has been rewritten for stability, and unneeded 'data', 'subset' and 'na.action' argument have been removed
o Added new function 'Boot' that is a simple front-end to boot::boot that will be useful when bootstrapping regression models. Implemented for lm and glm, but this is likely to work for many other S3 regression models with and 'update' method, 'subset' argument.
o Fixed bug in 'compareCoefs' with non-full rank models
o Modified 'bootCase' to return a matrix of class c("bootCase", "matrix") so generic functions can be written to summarize these objects.
o Minor changes to the returned value of showLabels to give both the label and the corresponding row number. showLabels documentation tweaked.
o Improved handling of center.pch argument to ellipse() (suggestion of Rob Kushler).
o New test argument for linearHypothesis.mer() and test.statistic argument for Anova.mer() for F-tests with Kenward/Roger df, provided by pbkrtest package.
o Anova.mlm() now will do univariate repeated-measures ANOVA even if the error SSP matrix is singular.
o hccm() will now accept a weighted linear models (suggestion of Stefan Holst Bache).
o deltaMethod.default() now applies coef() and vcov() to a model for which these are supported (generalizing a suggestion by Scott Kostyshak).
o Fixed handling of labels argument in scatterplot.formula() and scatterplotMatrix.formula().
o Fixed qqPlot.default() so that it honors line="none" (bug reported by Rob Kushler).
o Added new default method for confidenceEllipse(), which now can construct confidence ellipses for linear functions of coefficients.
o globalVariables() called for R 2.15.1 or later.
o Fixed bug in logit() when percents=TRUE and largest percent is 1 (reported by Eric Goodwin).
o Added radius argument to scatter3d() (suggestion of Antonino Messina).
o Fixed spurious errors message in scatter3d() when groups present but surface=FALSE (reported by David L. Carlson).
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be detected if its installed and build will fail.
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Changes: many new features and bug fixes. See NEWS file for details.
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=== 0.8.8 / 02.08.2013
Author: Nathan Colgate <nathancolgate@gmail.com>
Date: Thu Aug 1 15:01:57 2013 -0500
* Update excel/internals.rb to reference a valid Encoding type
* Encoding.find("MACINTOSH") was throwing an error. Encoding.find("MACROMAN") does not.
=== 0.8.7 / 24.07.2013
Author: Yasuhiro Asaka <yasaka@ywesee.com>
Date: Wed Jul 24 11:31:12 2013 +0900
* Remove warnings for test suite
* warning: mismatched indentations at 'end' with 'class' at xxx
* warning: method redefined; discarding old xxx
* warning: assigned but unused variable xxx
* warning: previous definition of xxx was here
* The source :rubygems is deprecated because HTTP
* requests are insecure. (Gemfile)
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This is a bug-fix release.
A version information bug in Makefile.am was fixed. Thanks to
Sebastien Villemot <sebastien@debian.org> for bug report.
GLPK 4.52 (release date: Jul 18, 2013)
The clique cut generator was essentially reimplemented, and now
it is able to process very large and/or dense conflict graphs.
A simple rounding heuristic was added to the MIP optimizer.
Some bugs were fixed in the proximity search heuristic routine.
Thanks to Giorgio Sartor <0gioker0@gmail.com>.
New command-line option '--proxy [nnn]' was added to glpsol to
enable using the proximity search heuristic.
A bug (incorrect processing of LI column indicator) was fixed
in the mps format reading routine. Thanks to Charles Brixko for
bug report.
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changes:
-Plotting uses cairo (and is antialised) by using updated GtkExtra
-Improvements to line plots including autoscaling the y axis by default
-PDF export
-Lots of of fixes and other minor improvements all over
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* What is new in gsl-1.16:
** fixed error in gsl_rng_fwrite where uninitialized padding
bytes were being written (bug #39104)
** fixed error in gsl_block_alloc where padding bytes were not
properly initialized (bugs #39101,#39102,#39103)
** fixed error in ntuple/test.c where padding bytes were not
properly initialized (bug #39105)
** fixed triangle selection bug in gsl_sf_coupling_6j_e and
gsl_sf_coupling_9j_e (bugs #39466 and #29606) (Håkan Johansson and
Alexey Illarionov)
** added higher level wrapper routine gsl_multifit_fdfsolver_driver
** converted gsl_multifit_linear_residuals to use dgemv to improve
efficiency (bug #39153)
** added functions gsl_stats_spearman and gsl_sort_vector2 to compute
Spearman rank correlation
** added function gsl_poly_dd_hermite_init for Hermite interpolation
** Added support for robust linear least squares
** Added function gsl_linalg_SV_leverage for computing statistical
leverages from SVD decomposition
** Added support for approximating the Jacobian of nonlinear least
squares fits using forward finite differences
** Extended gsl_sf_coupling_3j to allow larger range and to handle
the special case (ja jb jc; 0 0 0)=0 when ja+jb+jc is odd
** Fixed gsl_sf_mathieu_se_array to return zero when the order is zero
[bug #33679].
** Fixed overflow in gsl_sf_lncosh for large negative x (x<-354).
** Improved gsl_ran_negative_binomial_pdf to avoid underflow/overflow
for large arguments.
** Multisets now allow k strictly greater than n.
** Fixed gsl_matrix_complex_fwrite/fread failure for noncontiguous
matrices (Matthias Sitte).
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Gnumeric 1.12.4
Andreas:
* Improve xlsx export of Gnumeric functions.
* Improve xlsx import of Excel 2010 functions.
* Improve xls import of Excel 2010 functions.
* Fix documentation of r.q* and r.*nbinom. [#703164]
* Add Excel 2010's BETA.DIST.
* Fix crash on corrupted files. [#703149] [#703215] [#703625] [#703895]
* Fix import of sxc files. [#703249]
* Fix TDIST Import/Export from/to ODF.
* Write manual legend position to ODF. [#703362]
* Fix position handling in strict ODF export.
Jean:
* Don't attempt to add a path item when there is no path object. [#703052]
Morten:
* Improve accuracy for 2-argument ERF.
* Fix crashes on corrupted files. [#703143] [#703307] [#703306]
* Fix --with-long-double tests. [#703397]
* Fix problems saving auto filters to xls. [#703308]
* Improve handling of large graph ranges. [#703546]
* Fix analysis issue with translations. [#703355]
* Fix COUNTIF (etc) pattern matching. [#703770]
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are replaced with .include "../../devel/readline/buildlink3.mk", and
USE_GNU_READLINE are removed,
* .include "../../devel/readline/buildlink3.mk" without USE_GNU_READLINE
are replaced with .include "../../mk/readline.buildlink3.mk".
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Add missing DEPENDS
Upstream changes:
0.29 30 May 2013
- Fix a signed vs. unsigned char issue in ranged moebius. Thanks to the
Debian testers for finding this.
- XS is_prob_prime / is_prime now use a BPSW-style test (SPRP2 plus
extra strong Lucas test) for values over 2^32. This results in up
to 2.5x faster performance for large 64-bit values on most machines.
All PSP2s have been verified with Jan Feitsma's database.
- forprimes now uses a segmented sieve. This (1) allows arbitrary 64-bit
ranges with good memory use, and (2) allows nesting on threaded perls.
- prime_count_approx for very large values (> 10^36) was very slow without
Math::MPFR. Switch to Li+correction for large values if Math::MPFR is
not available.
- Workaround for MSVC compiler.
- Added:
is_pseudoprime (Fermat probable prime test)
is_lucas_pseudoprime (standard Lucas-Selfridge test)
is_extra_strong_lucas_pseudoprime (Mo/Jones/Grantham E.S. Lucas test)
0.28 23 May 2013
- An optimization to nth_prime caused occasional threaded Win32 faults.
Adjust so this is avoided.
- Yet another XS micro-speedup (PERL_NO_GET_CONTEXT)
- forprimes { block } [begin,]end. e.g.
forprimes { say } 100;
$sum = 0; forprimes { $sum += $_ } 1000,50000; say $sum;
forprimes { say if is_prime($_+2) } 10000; # print twin primes
- my $it = prime_iterator(10000); say $it->();
This is experimental (that is, the interface may change).
0.27 20 May 2013
- is_prime, is_prob_prime, next_prime, and prev_prime now all go straight
to XS if possible. This makes them much faster for small inputs without
having to use the -nobigint flag.
- XS simple number validation to lower function call overhead. Still a
lot more overhead compared to directly calling the XS functions, but
it shaves a little bit of time off every call.
- Speedup pure Perl factoring of small numbers.
- is_prob_prime / is_prime about 10% faster for composites.
- Allow '+N' as the second parameter to primes.pl. This allows:
primes.pl 100 +30
to return the primes between 100 and 130. Or:
primes.pl 'nth_prime(1000000000)' +2**8
- Use EXTENDED_TESTING to turn on extra tests.
0.26 21 April 2013
- Pure Perl factoring:
- real p-1 -- much faster and more effective
- Fermat (no better than HOLF)
- speedup for pbrent
- simple ECM
- redo factoring mix
- New functions:
prime_certificate produces a certificate of primality.
verify_prime checks a primality certificate.
- Pure perl primality proof now uses BLS75 instead of Lucas, so some
numbers will be much faster [n-1 only needs factoring to (n/2)^1/3].
- Math::Prime::Util::ECAffinePoint and ECProjectivePoint modules for
dealing with elliptic curves.
0.25 19 March 2013
- Speed up p-1 stage 2 factoring. Combined with some minor changes to the
general factoring combination, ~20% faster for 19 digit semiprimes.
- New internal macro to loop over primary sieve starting at 2. Simplifies
code in quite a few places.
- Forgot to skip one of the tests with broken 5.6.2.
0.24 10 March 2013
- Fix compilation with old pre-C99 strict compilers (decl after statement).
- euler_phi on a range wasn't working right with some ranges.
- More XS prime count improvements to speed and space. Add some tables
to the sieve count so it runs a bit faster. Transition from sieve later.
- PP prime count for 10^9 and larger is ~2x faster and uses much less
memory. Similar impact for nth_prime 10^8 or larger.
- Let factor.pl accept expressions just like primes.pl.
0.23 5 March 2013
- Replace XS Zeta for x > 5 with series from Cephes. It is 1 eps more
accurate for a small fraction of inputs. More importantly, it is much
faster in range 5 < x < 10. This only affects non-integer inputs.
- PP Zeta code replaced (for no-MPFR, non-bignums) with new series. The
new code is much more accurate for small values, and *much* faster.
- Add consecutive_integer_lcm function, just like MPU::GMP's (though we
define ci_lcm(0) = 0, which should get propogated).
- Implement binary search on RiemannR for XS nth_prime when n > 2e11.
Runs ~2x faster for 1e12, 3x faster for 1e13. Thanks to Programming
Praxis for the idea and motivation.
- Add the first and second Chebyshev functions (theta and psi).
- put isqrt(n) in util.h, use it everywhere.
put icbrt(n) in lehmer.h, use it there.
- Start on Lagarias-Miller-Odlyzko prime count.
- A new data structure for the phi(x,a) function used by all the fast
prime count routines. Quite a bit faster and most importantly, uses
half the memory of the old structure.
- Performance:
- Divisor sum with no sub is ~10x faster.
- Speed up PP version of exp_mangoldt, create XS version.
- Zeta much faster as mentioned above.
- faster nth_prime as mentioned above.
- AKS about 10% faster.
- Unroll a little more in sieve inner loop. A couple percent faster.
- Faster prime_count and nth_prime due to new phi(x,a) (about 1.25x).
0.22 26 February 2013
- Move main factor loop out of xs and into factor.c.
- Totient and Moebius now have complete XS implementations.
- Ranged totient uses less memory when segmented.
- Switch thread locking to pthreads condition variables.
0.21 22 February 2013
- Switch to using Bytes::Random::Secure for random primes. This is a
big change in that it is the first non-CORE module used. However, it
gets rid of lots of possible stupidness from system rand.
- Spelling fixes in documentation.
- primes.pl: Add circular and Panaitopol primes.
- euler_phi and moebius now will compute over a range.
- Add mertens function: 1000+ times faster than summing moebius($_).
- Add exp_mangoldt function: exponential of von Mangoldt's function.
- divisor_sum defaults to sigma if no sub is given (i.e. it sums).
- Performance:
- Speedup factoring small numbers. With -nobigint factoring from
1 to 10M, it's 1.2x faster. 1.5x faster than Math::Factor::XS.
- Totient and M枚bius over a range are much faster than separate calls.
- divisor_sum is 2x faster.
- primes.pl is much faster with Pillai primes.
- Reduce overhead in euler_phi -- about 2x faster for individual calls.
0.20 3 February 2013
- Speedup for PP AKS, and turn off test on 32-bit machines.
- Replaced fast sqrt detection in PP.pm with a slightly slower version.
The bloom filter doesn't work right in 32-bit Perl. Having a non-working
detector led to really bad performance. Hence this and the AKS change
should speed up testing on some 32-bit machines by a huge amount.
- Fix is_perfect_power in XS AKS.
0.19 1 February 2013
- Update MR bases with newest from http://miller-rabin.appspot.com/.
- Fixed some issues when using bignum and Calc BigInt backend, and bignum
and Perl 5.6.
- Added tests for bigint is_provable_prime.
- Added a few tests to give better coverage.
- Adjust some validation subroutines to cut down on overhead.
0.18 14 January 2013
- Add random_strong_prime.
- Fix builds with Solaris 9 and older.
- Add some debug info to perhaps find out why old ActiveState Perls are
dying in Math::BigInt::Calc, as if they were using really old versions
that run out of memory trying to calculate '2 ** 66'.
http://code.activestate.com/ppm/Math-Prime-Util/
0.17 20 December 2012
- Perl 5.8.1 - 5.8.7 miscalculates 12345 ** 4, which I used in a test.
- Fix (hopefully) for MSC compilation.
- Unroll sieve loop for another 20% or so speedup. It won't have much
practical application now that we use Lehmer's method for counts, but
there are some cases that can still show speedups.
- Changed the rand functionality yet again. Sorry. This should give
better support for plugging in crypto RNG's when used from other
modules.
0.16 11 December 2012
- randbits >= 32 on some 32-bit systems was messing us up. Restrict our
internal randbits to wordsize-1.
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=== 0.8.6 / 11.07.2013
Author: Arjun Anand and Robert Stern <dev+arjuna+rstern@reenhanced.com>
Date: Wed Jul 10 13:45:30 2013 -0400
* Allow editing of an existing worksheet.
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Also bump PKGREVISION for the option default change.
"Please do that" from wiz@ in PR/48023.
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can be fetched correctly, keeping in sync with devel/gmp inplace.mk
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Bump PKGREVISION.
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Upstream changes:
Version 3.98-1
* Compilation error with clang. Simple declaration of a routine.
Version 3.98-0
* Update for libxml2-2.9.1 and reading from a connection for xmlEventParse().
* xmlIncludes() is a hierarchical version of getXIncludes()
* Modifications to xmlSource(), e.g. verbose = TRUE as default.
Version 3.97-0
* Fix for xmlValue(node) = text. Identified by Lawrence Edwards.
Uses xmlNodeSetContent() now and leaves freeing the original content to that routine.
* Updates for xmlSource()
Version 3.96-1
* readHTMLTable() ignores headers that are over 999 characters.
* Fix a problem in readHTMLTable() with some table headers not having
the correct number of elements to match the columns.
Version 3.96-0
* Introduced readHTMLList(), getHTMLLinks(), getHTMLExternalFiles(), getXIncludes().
* When serializing XMLNode objects, i.e. R representations of nodes, ensure " and <, etc. in attributes
are serialized correctly.
Version 3.95-1
* Allow htmlParse(), xmlParse(), etc. ?
Version 3.95-0
* Moved development version of the source code for the package to github -
https://github.com/omegahat/XML.git
* Changes to the structure of the package to allow installation directly rather than
via a one-step staging into the R package structure.
* Sample XML documents moved from data/ to exampleData, and examples updated.
* getDefaultNamespace() and matchNamespaces() use simplify = TRUE to call
xmlNamespaceDefinitions() to get the namespaces as a character vector rather than
list.
* Documentation updates
Version 3.94-0
* getNodeLocation() now reports the actual line number for text nodes rather than 0,
using the sibling nodes' or parent node's line number.
* xpathApply() and related functions work with builtin type "functions",
e.g. class.
* xpathApply() and related functions (getNodeSet, xpathSApply) allow
the caller to specify multiple queries as a character vector
and these are pasted together as compound location paths by
separating them with a '|'. This makes it easier for the
caller to manage the different queries.
* assigning to a child of a node works, e.g. node[["abc"]] = text/node
and node[[index]] = text/node. We replace a matching name. If the
replacement value is text, we use the name to
* getChildrenStrings() is a function that implements the equivalent of
xmlApply(node, xmlValue) but faster because we avoid the function call
for each element.
* options parameter for xmlParse() and htmlParse() for controlling the parser.
(Currently only used when encoding is explicitly specified.)
* encoding parameter for xmlParse() and xmlTreeParse() now works for XML documents,
not just HTML documents.
* Update for readHTMLTable() method so that we look at just the final <tr> node
in a <thead>.
Version 3.93-1
* Fixed bug in findXInclude() that sometimes got the wrong XMLXIncludeStartNode.
Hence getNodeLocation() might report the wrong file, but correct line number!
* findXInclude() now has a recursive parameter that resolves the chain of XIncludes.
This returns the full path to the file, relative to the base/top-level document,
not just the parent document.
* Change to the default value of the error parameter in htmlParse() and htmlTreeParse()
which will generate a structured R error if there is an IO error.
The set of issues that will raise an error will be broadened in the future.
Version 3.93-0
* Enabled the fixing of <dummy> namespaces by finding the definition o
for that prefix in the ancestor nodes.
Version 3.92-2
* Synchronized compilation flags for Windows with those on OSX & Linux.
Version 3.92-1
* Restore original error handler function for htmlParse() and htmlTreeParse()
* Fixed a reference counting problem caused by not adding a finalizer in the
as() method for coercing an XMLInternalNode to an XMLInternalDocument.
Example from Janko Thyson.
* Fixed up some partial argument names found by R CMD check!
Version 3.92-0
* Added --enable-xml-debug option for the configure script and this activates
the debugging diagnostic reporting, mainly for the garbage collection and node
reference counts.
* Work-around for HTML documents not being freed (but XML documents are!)
* Added an isHTML parameter for xmlTreeParse.
* Merge htmlTreeParse/htmlParse with xmlTreeParse.
* Implemented some diagnostic facilities to determine if an external pointer
is in R's weak references list. This needs support within R. (Ask for code if
you want.)
Version 3.91-0
* Start of implementation to allow nested calls to newXMLNode() to use namespace prefixes
defined in ancestor nodes. Disabled at present.
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Update LICENSE
Upstream changes:
2013-02-28 Albrecht Gebhardt <agebhard@uni-klu.ac.at>
* DESCRIPTION, LICENSE: final version of license desription done.
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(No upstream changelog)
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(No upstream changelog)
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(No upstream changelog)
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Upstream changes:
2013-06-22 17:09 rsbivand
* DESCRIPTION, inst/LICENCE, inst/README, man/burkitt.Rd: help line
lengths
2013-03-30 13:30 rsbivand
* LICENCE: remove clang warning
2013-03-30 13:29 rsbivand
* src/ptinpoly.c: remove clang warning
2013-01-16 08:35 rsbivand
* ChangeLog, inst/ChangeLog: tidy
2013-01-16 08:34 rsbivand
* DESCRIPTION, R/First.lib.S: change to .onAttach for startup
message
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Upstream changes:
2013-06-28 09:04 edzer
* man/Spatial-class.Rd, man/disaggregate.Rd: added documentation
for disaggregate and aliases for spatstat S4 classes
2013-06-28 05:46 edzer
* NAMESPACE: export method disaggregate
2013-06-27 20:51 edzer
* NAMESPACE: exporting spatstat Classes ppp, im, psp, owin
2013-06-27 20:45 edzer
* R/sp_spat1.R: removed class tess (which is used, nor exported)
2013-06-27 06:54 edzer
* R/spdists.R, R/zerodist.R, man/zerodist.Rd, src/init.c, src/sp.h,
src/zerodist.c: zerodist and zerodist2 now handle longlat data,
using sp_gcdist
tidied spdists.R
2013-06-25 19:08 edzer
* R/SpatialLines-methods.R, R/spdists.R,
man/SpatialGridDataFrame-class.Rd, man/SpatialPoints-class.Rd,
man/SpatialPointsDataFrame-class.Rd, man/spDistsN1.Rd,
src/gcdist.c, src/sp.h, tests/Examples/sp-Ex.Rout.save: tidy;
added $ method for SpatialPoints, such that meuse$x is found even
if x is a coordinate.
added methods to convert from spatstat (im, ppp) to Spatial
objects
2013-06-25 17:13 rsbivand
* inst/doc/csdacm.Rnw, inst/doc/csdacm.pdf: adding footnote
2013-06-25 14:09 rsbivand
* DESCRIPTION: add vignette; fix line length issues
2013-06-25 14:03 rsbivand
* DESCRIPTION, inst/doc/csdacm.Rnw, inst/doc/csdacm.pdf,
inst/doc/intro_sp.pdf, inst/doc/over.pdf,
inst/external/seamap105_mod.csv, man/CRS-class.Rd,
man/SpatialPolygons-class.Rd,
man/SpatialPolygonsDataFrame-class.Rd,
man/as.SpatialPolygons.GridTopology.Rd, man/gridlines.Rd,
man/nowrapSpatialLines.Rd, man/polygons.Rd,
man/recenter-methods.Rd, man/spplot.Rd,
tests/Examples/sp-Ex.Rout.save: add vignette; fix line length
issues
2013-06-24 21:09 edzer
* R/SpatialPoints-methods.R, R/disaggregate.R, R/sp_spat1.R,
R/unfold.R: added disaggregate functions (not yet exported);
added $ method for SpatialPoints that also catches coordinates,
as meuse$x
sp_spat1 has the conversion from spatstat classes ppp and im to
Spatial objects
2013-06-21 14:11 rsbivand
* R/CRS-methods.R, man/CRS-class.Rd, man/is.projected.Rd,
tests/fail1.R, tests/fail1.Rout.save: checks on latlon and lonlat
2013-05-23 19:29 edzer
* R/Spatial-methods.R, man/spTransform.Rd: added spTransform(ANY)
methods that will stop and point to rgdal.
2013-05-07 09:12 rsbivand
* R/SpatialPoints-methods.R: guard against non-finite coordinates
2013-05-07 07:54 rsbivand
* inst/include/sp_xports.c, src/sp_xports.c: guard against
non-finite polygon coordinates
2013-04-26 08:54 edzer
* DESCRIPTION, R/SpatialGridDataFrame-methods.R, R/unfold.R:
scaffold for unfold - nothing exported; improved coercion
function
for SpatialPixelsDataFrame to SpatialGridDataFrame, thanks to Jon
Skoien.
2013-04-24 07:05 rsbivand
* ChangeLog, inst/ChangeLog: closeAllConnections in readRAST6
replaced by counted closure
2013-04-22 19:48 edzer
* DESCRIPTION: version update
2013-04-22 14:49 edzer
* demo/depend.R: tidy
2013-04-22 14:24 edzer
* demo/depend.R: better depend script
2013-04-22 09:34 edzer
* demo/depend.R, man/spTransform.Rd,
tests/Examples/sp-Ex.Rout.save, tests/fail1.Rout.save: added
spTransform doc, updated checks, depend now uses two cores.
2013-04-19 15:52 edzer
* DESCRIPTION: increased the rgdal version dependency
2013-04-19 13:16 edzer
* NAMESPACE, R/Spatial-methods.R: defines generic, and exports
method spTransform.
2013-04-12 22:11 mdsumner
* R/gridlines.R: stringsAsFactors = FALSE for gridat labels,
otherwise the factors returned are unusable without conversion to
character
2013-03-30 13:36 edzer
* DESCRIPTION: version bump
2013-03-30 13:33 edzer
* R/spplot.R: lwd and lty now work on spplot()'ing
SpatialPolygonsDataFrame objects;
email today on r-sig-geo.
2013-03-29 10:00 rsbivand
* ChangeLog, inst/ChangeLog: tidy
2013-03-29 09:57 rsbivand
* inst/include/sp_xports.c: removing clang warnings
2013-03-29 09:56 rsbivand
* DESCRIPTION, src/Rcentroid.c, src/pip.c, src/pip2.c,
src/sp_xports.c, src/zerodist.c: removing clang warnings
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