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# $NetBSD: Makefile,v 1.2 2021/05/24 19:49:10 wiz Exp $
DISTNAME= bowtie2-2.4.2
PKGREVISION= 1
CATEGORIES= biology
MASTER_SITES= ${MASTER_SITE_GITHUB:=BenLangmead/}
GITHUB_TAG= v${PKGVERSION_NOREV}
MAINTAINER= bacon@NetBSD.org
HOMEPAGE= https://github.com/BenLangmead/bowtie2
COMMENT= Ultrafast, memory-efficient short read aligner
LICENSE= gnu-gpl-v3
USE_LANGUAGES= c c++
USE_TOOLS+= gmake pax:build perl:run
REPLACE_PERL= scripts/*.pl bowtie2
REPLACE_PYTHON= bowtie2-build bowtie2-inspect
REPLACE_SH= scripts/bowtie2-hbb.sh
# Use onetbb on supported platforms when a package is available
MAKE_FLAGS+= NO_TBB=1
DATADIR= ${PREFIX}/share/bowtie2
EXAMPLESDIR= ${PREFIX}/share/examples/bowtie2
INSTALLATION_DIRS= share/bowtie2/scripts share/examples/bowtie2
post-install:
${INSTALL_PROGRAM} ${WRKSRC}/bowtie2*-s ${WRKSRC}/bowtie2*-l \
${DESTDIR}${PREFIX}/bin
${INSTALL_SCRIPT} ${WRKSRC}/scripts/*.sh ${WRKSRC}/scripts/*.pl \
${DESTDIR}${DATADIR}/scripts
(cd ${WRKSRC}/example && pax -rw index reads reference \
${DESTDIR}${EXAMPLESDIR})
.include "../../lang/python/application.mk"
.include "../../devel/zlib/buildlink3.mk"
.include "../../mk/bsd.pkg.mk"
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