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# $NetBSD: Makefile,v 1.2 2021/05/24 19:49:10 wiz Exp $
DISTNAME= fastqc_v${PKGVERSION_NOREV}
PKGNAME= fastqc-0.11.9
PKGREVISION= 1
CATEGORIES= biology
MASTER_SITES= https://www.bioinformatics.babraham.ac.uk/projects/fastqc/
EXTRACT_SUFX= .zip
MAINTAINER= bacon@NetBSD.org
HOMEPAGE= https://www.bioinformatics.babraham.ac.uk/projects/fastqc/
COMMENT= Quality control tool for high throughput sequence data
LICENSE= gnu-gpl-v3
SUBST_CLASSES+= javapath
SUBST_STAGE.javapath= pre-configure
SUBST_SED.javapath+= -e 's|$$RealBin$$delimiter|${DATADIR}$$delimiter${JAVAJARDIR}/fastqc$$delimiter|g'
SUBST_SED.javapath+= -e 's|$$RealBin/|${JAVAJARDIR}/fastqc/|g'
SUBST_FILES.javapath+= fastqc
USE_TOOLS+= perl:run pax
USE_JAVA= run
USE_JAVA2= 8
WRKSRC= ${WRKDIR}/FastQC
REPLACE_PERL= fastqc
NO_BUILD= yes
DATADIR= ${PREFIX}/share/fastqc
DOCSDIR= ${PREFIX}/share/doc/fastqc
JAVAJARDIR= ${PREFIX}/share/java/classes
INSTALLATION_DIRS= bin ${DATADIR} ${DOCSDIR} ${JAVAJARDIR}/fastqc
do-install:
${INSTALL_DATA} ${WRKSRC}/*.jar ${DESTDIR}${JAVAJARDIR}/fastqc
${INSTALL_SCRIPT} ${WRKSRC}/fastqc ${DESTDIR}${PREFIX}/bin
cd ${WRKSRC} && pax -rw Configuration ${DESTDIR}${DATADIR}
cd ${WRKSRC} && pax -rw Templates ${DESTDIR}${DATADIR}
cd ${WRKSRC} && pax -rw net ${DESTDIR}${JAVAJARDIR}/fastqc
cd ${WRKSRC} && pax -rw org ${DESTDIR}${JAVAJARDIR}/fastqc
cd ${WRKSRC} && pax -rw uk ${DESTDIR}${JAVAJARDIR}/fastqc
cd ${WRKSRC} && pax -rw Help ${DESTDIR}${DOCSDIR}
.include "../../mk/bsd.pkg.mk"
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