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# $NetBSD: Makefile,v 1.6 2021/05/24 19:49:11 wiz Exp $
DISTNAME= hisat2-2.1.0.23
PKGREVISION= 5
CATEGORIES= biology
MASTER_SITES= ${MASTER_SITE_GITHUB:=infphilo/}
GITHUB_TAG= 20f333e2cfe7ff4d1362b248912893e2644683d7
MAINTAINER= bacon@NetBSD.org
HOMEPAGE= https://ccb.jhu.edu/software/hisat2/index.shtml
COMMENT= Alignment program for mapping next-generation sequencing reads
LICENSE= gnu-gpl-v3
# 64-bit code, some assembly language
ONLY_FOR_PLATFORM= *-*-x86_64
USE_LANGUAGES= c c++
USE_TOOLS+= bash gmake perl
REPLACE_BASH= hisatgenotype_scripts/*.sh
REPLACE_PERL= hisat2 scripts/*.sh scripts/*.pl
REPLACE_PYTHON= *.py hisat2-build hisat2-inspect
REPLACE_PYTHON+= hisatgenotype_modules/*.py hisatgenotype_scripts/*.py
MAKE_FILE= ${FILESDIR}/Makefile.pkg
PTHREAD_AUTO_VARS= yes
.include "../../lang/python/application.mk"
.include "../../mk/pthread.buildlink3.mk"
.include "../../mk/bsd.pkg.mk"
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