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# $NetBSD: Makefile,v 1.11 2006/01/29 19:31:43 schwarz Exp $
#
DISTNAME= MUMmer3.18
PKGNAME= mummer-3.18
CATEGORIES= biology
MASTER_SITES= ${MASTER_SITE_SOURCEFORGE:=mummer/}
MAINTAINER= hdp@cs.nmsu.edu
HOMEPAGE= http://mummer.sourceforge.net/
COMMENT= System for aligning whole genome sequences
WRKSRC= ${WRKDIR}/${DISTNAME}
USE_TOOLS+= gmake perl:run
USE_LANGUAGES= c c++
MAKE_ENV+= SH=${SH:Q}
MAKE_ENV+= PERL=${PERL5:Q}
INSTALLATION_DIRS= bin
do-install:
.for PROGRAM in annotate combineMUMs delta-filter gaps mgaps mummer \
repeat-match show-aligns show-coords show-snps show-tiling
${INSTALL_PROGRAM} ${WRKSRC}/${PROGRAM} ${PREFIX}/bin
.endfor
.for PROGRAM in postnuc postpro prenuc prepro
${INSTALL_PROGRAM} ${WRKSRC}/aux_bin/${PROGRAM} ${PREFIX}/bin
.endfor
${INSTALL_DATA_DIR} ${PREFIX}/share/mummer
.for SCRIPT in run-mummer1 run-mummer3 nucmer promer exact-tandems \
mapview mummerplot nucmer2xfig
${INSTALL_SCRIPT} ${WRKSRC}/${SCRIPT} ${PREFIX}/share/mummer
.endfor
${INSTALL_DATA_DIR} ${PREFIX}/share/doc/html/mummer
.for HTML in MUMmer.pdf MUMmer2.pdf MUMmer3.pdf XFiles.pdf \
applications.html compare.html index.html logo.gif \
mummer-help.gif mummer-users.gif
${INSTALL_DATA} ${WRKSRC}/docs/web/${HTML} \
${PREFIX}/share/doc/html/mummer
.endfor
${INSTALL_DATA_DIR} ${PREFIX}/share/doc/html/mummer/examples
.for HTML in dotplot.gif examples_logo.gif index.html mapplot.gif \
mapview_fig.jpg mummer_ps.jpg
${INSTALL_DATA} ${WRKSRC}/docs/web/examples/${HTML} \
${PREFIX}/share/doc/html/mummer/examples
.endfor
${INSTALL_DATA_DIR} ${PREFIX}/share/doc/html/mummer/examples/data
.for DATA in B_anthracis_Mslice.fasta B_anthracis_contigs.fasta \
D_melanogaster_2Rslice.cds D_melanogaster_2Rslice.fasta \
D_melanogaster_2Rslice.utr D_pseudoobscura_contigs.fasta \
H_pylori26695_Bslice.fasta H_pylori26695_Eslice.fasta \
H_pyloriJ99_Bslice.fasta H_pyloriJ99_Eslice.fasta README \
mapview_0.fig mapview_0.pdf mummer.fplot mummer.gp mummer.mums \
mummer.ps mummer.rplot mummer1.align mummer1.errorsgaps \
mummer1.gaps mummer1.out mummer3.align mummer3.errorsgaps \
mummer3.gaps mummer3.out nucmer.cluster nucmer.coords \
nucmer.delta nucmer.snps nucmer.tiling promer.aligns \
promer.cluster promer.coords promer.delta
${INSTALL_DATA} ${WRKSRC}/docs/web/examples/data/${DATA} \
${PREFIX}/share/doc/html/mummer/examples/data
.endfor
${INSTALL_DATA_DIR} ${PREFIX}/share/doc/html/mummer/manual
.for HTML in covplot.gif dotplot.gif gaps.gif index.html \
manual_logo.gif mgaps.gif multiplota.gif multiplotb.gif \
nuc_proex.gif nucex.gif osi.gif pro_proex.gif
${INSTALL_DATA} ${WRKSRC}/docs/web/manual/${HTML} \
${PREFIX}/share/doc/html/mummer/manual
.endfor
${INSTALL_DATA_DIR} ${PREFIX}/share/doc/mummer
.for DOC in mapview.README maxmat3man.tex maxmat3src.pdf nucmer.README \
optionman.sty promer.README run-mummer1.README run-mummer3.README \
skaff.sty
${INSTALL_DATA} ${WRKSRC}/docs/${DOC} ${PREFIX}/share/doc/mummer
.endfor
.include "../../mk/bsd.pkg.mk"
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