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# $NetBSD: Makefile,v 1.9 2005/07/16 19:10:38 jlam Exp $
#
DISTNAME= MUMmer3.15
PKGNAME= mummer-3.15
PKGREVISION= 1
CATEGORIES= biology
MASTER_SITES= ftp://ftp.tigr.org/pub/software/MUMmer/
MAINTAINER= hdp@cs.nmsu.edu
HOMEPAGE= http://www.tigr.org/software/mummer/
COMMENT= System for aligning whole genome sequences
WRKSRC= ${WRKDIR}/${DISTNAME}
USE_TOOLS+= gmake perl:run
MAKE_ENV+= SH="${SH}"
MAKE_ENV+= PERL="${PERL5}"
INSTALLATION_DIRS= bin
do-install:
.for PROGRAM in annotate combineMUMs gaps mgaps mummer repeat-match \
show-aligns show-coords show-tiling
${INSTALL_PROGRAM} ${WRKSRC}/${PROGRAM} ${PREFIX}/bin
.endfor
.for PROGRAM in postnuc postpro prenuc prepro
${INSTALL_PROGRAM} ${WRKSRC}/aux_bin/${PROGRAM} ${PREFIX}/bin
.endfor
${INSTALL_DATA_DIR} ${PREFIX}/share/mummer
.for SCRIPT in run-mummer1 run-mummer3 nucmer promer exact-tandems \
mummerplot nucmer2xfig
${INSTALL_SCRIPT} ${WRKSRC}/${SCRIPT} ${PREFIX}/share/mummer
.endfor
${INSTALL_DATA_DIR} ${PREFIX}/share/doc/html/mummer
.for HTML in covplot.gif dotplot.gif email.jpg gaps.gif index.html \
manual_logo.gif mgaps.gif nuc_proex.gif nucex.gif osi.gif \
pro_proex.gif
${INSTALL_DATA} ${WRKSRC}/docs/htmlmanual/${HTML} \
${PREFIX}/share/doc/html/mummer
.endfor
${INSTALL_DATA_DIR} ${PREFIX}/share/doc/mummer
.for DOC in maxmat3man.tex maxmat3src.pdf nucmer.README \
optionman.sty promer.README run-mummer1.README run-mummer3.README \
skaff.sty
${INSTALL_DATA} ${WRKSRC}/docs/${DOC} ${PREFIX}/share/doc/mummer
.endfor
.include "../../mk/bsd.pkg.mk"
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