1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
|
# $NetBSD: Makefile,v 1.231 2022/03/19 23:13:59 brook Exp $
#
# If updating this package, please try to ensure PLIST.Darwin is kept in sync
# to avoid unnecessarily breaking macOS users.
#
DISTNAME= R-4.1.3
CATEGORIES= math
MASTER_SITES= ${MASTER_SITE_R_CRAN:=base/R-4/}
MAINTAINER= pkgsrc-users@NetBSD.org
HOMEPAGE= https://www.R-project.org/
COMMENT= Statistical language for data analysis and graphics
LICENSE= gnu-gpl-v2
USE_GCC_RUNTIME= yes
BUILD_TARGET= all info
INSTALL_TARGET= install install-info
TEST_TARGET= check
USE_LANGUAGES= c c++ fortran
USE_LIBTOOL= yes
USE_TOOLS+= aclocal autoconf autoreconf automake gmake gzip:run
USE_TOOLS+= makeinfo perl:run pkg-config sed unzip:run
TEXINFO_REQD= 5.1
INFO_FILES= yes
PTHREAD_AUTO_VARS= yes
GNU_CONFIGURE= yes
GNU_CONFIGURE_ICONV= no
CONFIGURE_ARGS+= --enable-R-shlib
CONFIGURE_ARGS+= --with-readline
CONFIGURE_ARGS+= --with-tcltk
CONFIGURE_ARGS+= --with-tcl-config=${BUILDLINK_PREFIX.tcl}/lib/tclConfig.sh
CONFIGURE_ARGS+= --with-tk-config=${BUILDLINK_PREFIX.tk}/lib/tkConfig.sh
.include "../../mk/bsd.prefs.mk"
.if ${OPSYS} == "NetBSD" || ${OPSYS} == "FreeBSD"
CONFIGURE_ARGS+= --enable-long-double=no
.endif
.if ${OPSYS} != "Linux"
USE_GNU_ICONV= yes # latin1 support, iconvlist
.endif
PLIST_VARS+= x11
# Disable Mac OS specific support used by R.app
.if ${OPSYS} == "Darwin"
CONFIGURE_ARGS+= --disable-R-framework
CONFIGURE_ARGS+= --with-aqua
CONFIGURE_ARGS+= --without-x
.else
USE_TOOLS+= xmkmf
CONFIGURE_ARGS+= --with-x
PLIST.x11= yes
.endif
# Think about making this consistent with Numpy, using a full
# BLAS/LAPACK by default and only on request accelerate. Just
# BLAS_ACCEPTED= ${_BLAS_TYPES} accelerate.framework
# (here and in buildlink3.mk) and deleting the first conditional
# branch might work, given that R knows what todo with
# -framework Accelerate. Someone on Darwin really needs to test.
.if exists(/System/Library/Frameworks/Accelerate.framework)
CONFIGURE_ARGS+= --with-blas="-framework Accelerate"
CONFIGURE_ARGS+= --with-lapack # contained in the above
.else
# Could be two distinct libraries. Note that, at least int the past,
# R folks were not fond of linking external lapack.
CONFIGURE_ARGS+= --disable-BLAS-shlib
CONFIGURE_ARGS+= --with-blas=${BLAS_LIBS:Q}
CONFIGURE_ARGS+= --with-lapack=${LAPACK_LIBS:Q}
.endif
# Work around missing MAIN__() definition used in -lF77 by AC_CHECK_LIB.
# and other failures due to not linking to support libs during testing
CONFIGURE_ENV+= ac_cv_lib_blas_dgemm=yes
CONFIGURE_ENV+= ac_cv_lib_blas_dgemm_=yes
CONFIGURE_ENV+= r_cv_complete_blas=yes
# Broken test for bzlib >= 1.0.5 in R 2.7.0
CONFIGURE_ENV+= r_cv_have_bzlib=yes
# Override zlib 1.2.5 requirement
CONFIGURE_ENV+= r_cv_header_zlib_h=yes
CONFIGURE_ENV+= GETWD=${TOOLS_PWD_CMD}
CONFIGURE_ENV+= lt_cv_path_LD=${LD:Q}
CONFIGURE_ENV+= lt_cv_path_SED=${TOOLS_SED}
CONFIGURE_ENV+= ac_cv_path_R_GZIPCMD=${TOOLS_GZIP_CMD}
CONFIGURE_ENV+= ac_cv_path_R_UNZIPCMD=${TOOLS_PATH.unzip}
CONFIGURE_ENV+= r_cv_prog_f77_flag_mieee=no
CONFIGURE_ENV+= ac_cv_path_PDFLATEX=""
# We don't want "lib64"
CONFIGURE_ENV+= LIBnn=lib
# Package assumes it can append to files (specifically DESCRIPTION) that have
# been installed SHAREMODE
SHAREMODE= 644
CONFIGURE_ARGS.Darwin+= --disable-openmp
# R_PAPERSIZE can be: A4, Letter, Legal, Executive
.if defined(PAPERSIZE)
R_PAPERSIZE?= ${PAPERSIZE}
.else
R_PAPERSIZE?= A4
.endif
.if (${R_PAPERSIZE} == "Letterdj")
R_PAPERSIZE= Letter
.endif
CONFIGURE_ENV+= R_PAPERSIZE=${R_PAPERSIZE:Q}
# These macros are used during the build, so strip off the -o,-g flags.
INSTALL_DATA= ${INSTALL} ${COPY} -m ${SHAREMODE}
INSTALL_SCRIPT= ${INSTALL} ${COPY} -m ${BINMODE}
## to build NEWS.pdf
#BUILD_DEPENDS+= tex-latex-bin-[0-9]*:../../print/tex-latex-bin
#BUILD_DEPENDS+= tex-metafont-[0-9]*:../../fonts/tex-metafont
#BUILD_DEPENDS+= tex-ae-[0-9]*:../../fonts/tex-ae
#BUILD_DEPENDS+= tex-ec-[0-9]*:../../fonts/tex-ec
#BUILD_DEPENDS+= tex-tools-[0-9]*:../../print/tex-tools
#BUILD_DEPENDS+= tex-url-[0-9]*:../../print/tex-url
#BUILD_DEPENDS+= tex-oberdiek-[0-9]*:../../print/tex-oberdiek
#BUILD_DEPENDS+= tex-amsfonts-[0-9]*:../../fonts/tex-amsfonts
#BUILD_DEPENDS+= tex-cm-[0-9]*:../../fonts/tex-cm
#BUILD_DEPENDS+= tex-cm-super-[0-9]*:../../fonts/tex-cm-super
#BUILD_DEPENDS+= tex-fontname-[0-9]*:../../fonts/tex-fontname
#BUILD_DEPENDS+= tex-graphics-[0-9]*:../../print/tex-graphics
#BUILD_DEPENDS+= tex-hyperref-[0-9]*:../../print/tex-hyperref
#BUILD_DEPENDS+= tex-iftex>=1.0d:../../print/tex-iftex
#BUILD_DEPENDS+= tex-latex-[0-9]*:../../print/tex-latex
#BUILD_DEPENDS+= tex-latexconfig-[0-9]*:../../print/tex-latexconfig
#BUILD_DEPENDS+= tex-mptopdf-[0-9]*:../../graphics/tex-mptopdf
#BUILD_DEPENDS+= tex-pdftex-def-[0-9]*:../../print/tex-pdftex
SUBST_CLASSES+= rpath
SUBST_STAGE.rpath= pre-configure
SUBST_FILES.rpath= configure.ac
SUBST_VARS.rpath= COMPILER_RPATH_FLAG
SUBST_CLASSES+= fixwrap
SUBST_STAGE.fixwrap= post-build
SUBST_FILES.fixwrap= libtool
SUBST_SED.fixwrap= -e "s,${WRAPPER_BINDIR}/libtool,${PKG_LIBTOOL},g"
BUILDLINK_API_DEPENDS.bzip2+= bzip2>=1.0.5
# failed to convert strong functions and variables: Invalid type identifier
CTF_FILES_SKIP+= lib/R/library/mgcv/libs/mgcv.so
# Exposes PKG_CONFIG_LIBDIR buildlink paths in a comment.
CHECK_WRKREF_SKIP+= lib/R/etc/Makeconf
pre-configure:
${RUN} cd ${WRKSRC} && autoreconf -fvi || echo Ignore the warnings from autoreconf
# Fix library names. Relies on build system using -headerpad_max_install_names.
.if ${OPSYS} == "Darwin"
.PHONY: fix-darwin-install-name
post-install: fix-darwin-install-name
fix-darwin-install-name:
${FIND} ${DESTDIR}${PREFIX} -name "*.so" | while read lib; do \
libname=`basename $${lib}`; \
libdir=`dirname $${lib} | sed -e 's,${DESTDIR},,'`; \
install_name_tool -id $${libdir}/$${libname} $${lib}; \
done
.endif
.include "../../archivers/bzip2/buildlink3.mk"
.include "../../archivers/xz/buildlink3.mk"
.include "../../converters/libiconv/buildlink3.mk"
.include "../../devel/gettext-lib/buildlink3.mk"
.include "../../devel/glib2/buildlink3.mk"
.include "../../devel/pango/buildlink3.mk"
.include "../../devel/pcre2/buildlink3.mk"
# uses callback interface
.include "../../devel/readline/buildlink3.mk"
.include "../../devel/zlib/buildlink3.mk"
.include "../../graphics/cairo/buildlink3.mk"
.include "../../mk/jpeg.buildlink3.mk"
.include "../../graphics/png/buildlink3.mk"
.include "../../graphics/tiff/buildlink3.mk"
.if !exists(/System/Library/Frameworks/Accelerate.framework)
.include "../../mk/blas.buildlink3.mk"
.endif
.include "../../www/curl/buildlink3.mk"
.include "../../x11/tk/buildlink3.mk"
.if ${OPSYS} != "Darwin"
.include "../../x11/libXt/buildlink3.mk"
.endif
INSTALL_TEMPLATES+= ../../math/R/files/pkg-index.tmpl
DEINSTALL_TEMPLATES+= ../../math/R/files/pkg-index.tmpl
PRINT_PLIST_AWK+= /^lib\/R\/doc\/html\/packages.html$$/ { next; }
.include "../../mk/pthread.buildlink3.mk"
.include "../../mk/bsd.pkg.mk"
|