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| author | bacon <bacon@pkgsrc.org> | 2022-12-12 18:39:36 +0000 |
|---|---|---|
| committer | bacon <bacon@pkgsrc.org> | 2022-12-12 18:39:36 +0000 |
| commit | 88617cd3c0dbcb3d207aea9f282a8e7fa08ec654 (patch) | |
| tree | a79359dba915db0135d6df4b6f6493d70541c961 /biology/rna-seq | |
| parent | b3c41309edf57ffb85f91f260b309b05cf2503d7 (diff) | |
| download | pkgsrc-88617cd3c0dbcb3d207aea9f282a8e7fa08ec654.tar.gz | |
biology/rna-seq: Core tools needed for RNA-Seq analysis
The rna-seq meta-package provides the core tools needed for performing
a typical RNA-Seq differential gene expression analysis, including
adapter trimming, quality control, alignment, and identification of
differentially expressed genes. Researchers may want additional tools
for data manipulation, gene ontology, etc.
Diffstat (limited to 'biology/rna-seq')
| -rw-r--r-- | biology/rna-seq/DESCR | 5 | ||||
| -rw-r--r-- | biology/rna-seq/Makefile | 23 |
2 files changed, 28 insertions, 0 deletions
diff --git a/biology/rna-seq/DESCR b/biology/rna-seq/DESCR new file mode 100644 index 00000000000..7f4a034ce4b --- /dev/null +++ b/biology/rna-seq/DESCR @@ -0,0 +1,5 @@ +The rna-seq meta-package provides the core tools needed for performing +a typical RNA-Seq differential gene expression analysis, including +adapter trimming, quality control, alignment, and identification of +differentially expressed genes. Researchers may want additional tools +for data manipulation, gene ontology, etc. diff --git a/biology/rna-seq/Makefile b/biology/rna-seq/Makefile new file mode 100644 index 00000000000..d800c341952 --- /dev/null +++ b/biology/rna-seq/Makefile @@ -0,0 +1,23 @@ +# $NetBSD: Makefile,v 1.1 2022/12/12 18:39:36 bacon Exp $ +# + +DISTNAME= rna-seq-1.0 +CATEGORIES= biology meta-pkgs +MASTER_SITES= # empty + +MAINTAINER= bacon@NetBSD.org +COMMENT= Core tools needed for RNA-Seq analysis + +DEPENDS+= fastq-trim>=0:../../biology/fastq-trim +DEPENDS+= fastqc>=0:../../biology/fastqc +DEPENDS+= biolibc-tools>=0:../../biology/biolibc-tools +DEPENDS+= gffread>=0:../../biology/gffread +DEPENDS+= kallisto>=0:../../biology/kallisto +DEPENDS+= hisat2>=0:../../biology/hisat2 +DEPENDS+= samtools>=0:../../biology/samtools +DEPENDS+= igv>=0:../../biology/igv +DEPENDS+= fasda>=0:../../biology/fasda + +META_PACKAGE= yes + +.include "../../mk/bsd.pkg.mk" |