diff options
| author | nia <nia@pkgsrc.org> | 2022-06-30 11:18:01 +0000 |
|---|---|---|
| committer | nia <nia@pkgsrc.org> | 2022-06-30 11:18:01 +0000 |
| commit | c8c52b1eaa9f02980199a8b4bc92344ac344e087 (patch) | |
| tree | c21e2f959a7f54c264b8e94f4eb22405e479275d /biology | |
| parent | fab17aa19a19efcffd3db0717cc1cae844bb3581 (diff) | |
| download | pkgsrc-c8c52b1eaa9f02980199a8b4bc92344ac344e087.tar.gz | |
*: Revbump packages that use Python at runtime without a PKGNAME prefix
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/bcftools/Makefile | 4 | ||||
| -rw-r--r-- | biology/bedtools/Makefile | 3 | ||||
| -rw-r--r-- | biology/bowtie2/Makefile | 4 | ||||
| -rw-r--r-- | biology/filter-fastq/Makefile | 3 | ||||
| -rw-r--r-- | biology/hisat2/Makefile | 4 | ||||
| -rw-r--r-- | biology/ncbi-blast+/Makefile | 4 | ||||
| -rw-r--r-- | biology/peak-classifier/Makefile | 3 | ||||
| -rw-r--r-- | biology/samtools/Makefile | 4 | ||||
| -rw-r--r-- | biology/stacks/Makefile | 4 |
9 files changed, 18 insertions, 15 deletions
diff --git a/biology/bcftools/Makefile b/biology/bcftools/Makefile index bfe111583a2..1749476f1fc 100644 --- a/biology/bcftools/Makefile +++ b/biology/bcftools/Makefile @@ -1,7 +1,7 @@ -# $NetBSD: Makefile,v 1.14 2022/06/28 11:30:59 wiz Exp $ +# $NetBSD: Makefile,v 1.15 2022/06/30 11:18:04 nia Exp $ DISTNAME= bcftools-1.15 -PKGREVISION= 1 +PKGREVISION= 2 CATEGORIES= biology MASTER_SITES= ${MASTER_SITE_GITHUB:=samtools/} diff --git a/biology/bedtools/Makefile b/biology/bedtools/Makefile index bee7cc36d8a..12ecb5bb011 100644 --- a/biology/bedtools/Makefile +++ b/biology/bedtools/Makefile @@ -1,6 +1,7 @@ -# $NetBSD: Makefile,v 1.2 2021/02/08 01:49:25 bacon Exp $ +# $NetBSD: Makefile,v 1.3 2022/06/30 11:18:04 nia Exp $ DISTNAME= bedtools-2.30.0 +PKGREVISION= 1 CATEGORIES= biology MASTER_SITES= ${MASTER_SITE_GITHUB:=arq5x/} GITHUB_PROJECT= bedtools2 diff --git a/biology/bowtie2/Makefile b/biology/bowtie2/Makefile index 1500ca44d33..3815832658c 100644 --- a/biology/bowtie2/Makefile +++ b/biology/bowtie2/Makefile @@ -1,7 +1,7 @@ -# $NetBSD: Makefile,v 1.4 2022/06/28 11:30:59 wiz Exp $ +# $NetBSD: Makefile,v 1.5 2022/06/30 11:18:04 nia Exp $ DISTNAME= bowtie2-2.4.4 -PKGREVISION= 1 +PKGREVISION= 2 CATEGORIES= biology MASTER_SITES= ${MASTER_SITE_GITHUB:=BenLangmead/} GITHUB_TAG= v${PKGVERSION_NOREV} diff --git a/biology/filter-fastq/Makefile b/biology/filter-fastq/Makefile index 14fa8a995b7..68962deb123 100644 --- a/biology/filter-fastq/Makefile +++ b/biology/filter-fastq/Makefile @@ -1,6 +1,7 @@ -# $NetBSD: Makefile,v 1.1 2021/05/27 17:11:42 brook Exp $ +# $NetBSD: Makefile,v 1.2 2022/06/30 11:18:04 nia Exp $ PKGNAME= filter-fastq-0.0.0.20210527 +PKGREVISION= 1 GITHUB_PROJECT= filter-fastq GITHUB_TAG= d2c9218 DISTNAME= filter-fastq diff --git a/biology/hisat2/Makefile b/biology/hisat2/Makefile index c1cd61ca1d8..b49f5afeece 100644 --- a/biology/hisat2/Makefile +++ b/biology/hisat2/Makefile @@ -1,7 +1,7 @@ -# $NetBSD: Makefile,v 1.8 2022/06/28 11:31:00 wiz Exp $ +# $NetBSD: Makefile,v 1.9 2022/06/30 11:18:04 nia Exp $ DISTNAME= hisat2-2.2.1 -PKGREVISION= 1 +PKGREVISION= 2 CATEGORIES= biology MASTER_SITES= ${MASTER_SITE_GITHUB:=DaehwanKimLab/} GITHUB_TAG= v${PKGVERSION_NOREV} diff --git a/biology/ncbi-blast+/Makefile b/biology/ncbi-blast+/Makefile index 802f8bcc9e4..9cfd5f923ed 100644 --- a/biology/ncbi-blast+/Makefile +++ b/biology/ncbi-blast+/Makefile @@ -1,8 +1,8 @@ -# $NetBSD: Makefile,v 1.30 2022/06/28 11:31:01 wiz Exp $ +# $NetBSD: Makefile,v 1.31 2022/06/30 11:18:04 nia Exp $ DISTNAME= ncbi-blast-2.13.0+-src PKGNAME= ${DISTNAME:S/+-src//:S/blast/blast+/} -PKGREVISION= 2 +PKGREVISION= 3 CATEGORIES= biology MASTER_SITES= https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST/ \ https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/${PKGVERSION_NOREV}/ diff --git a/biology/peak-classifier/Makefile b/biology/peak-classifier/Makefile index e5d55d1a5bf..4f6bed50adb 100644 --- a/biology/peak-classifier/Makefile +++ b/biology/peak-classifier/Makefile @@ -1,6 +1,7 @@ -# $NetBSD: Makefile,v 1.6 2022/06/11 19:52:58 bacon Exp $ +# $NetBSD: Makefile,v 1.7 2022/06/30 11:18:04 nia Exp $ DISTNAME= peak-classifier-0.1.4 +PKGREVISION= 1 CATEGORIES= biology MASTER_SITES= ${MASTER_SITE_GITHUB:=auerlab/} diff --git a/biology/samtools/Makefile b/biology/samtools/Makefile index 1e07f96b222..1a18df20d09 100644 --- a/biology/samtools/Makefile +++ b/biology/samtools/Makefile @@ -1,7 +1,7 @@ -# $NetBSD: Makefile,v 1.15 2022/06/28 11:31:01 wiz Exp $ +# $NetBSD: Makefile,v 1.16 2022/06/30 11:18:04 nia Exp $ DISTNAME= samtools-1.15 -PKGREVISION= 1 +PKGREVISION= 2 CATEGORIES= biology MASTER_SITES= ${MASTER_SITE_GITHUB:=samtools/} diff --git a/biology/stacks/Makefile b/biology/stacks/Makefile index a3a86f03f27..27d74bf8d73 100644 --- a/biology/stacks/Makefile +++ b/biology/stacks/Makefile @@ -1,7 +1,7 @@ -# $NetBSD: Makefile,v 1.9 2022/06/28 11:31:01 wiz Exp $ +# $NetBSD: Makefile,v 1.10 2022/06/30 11:18:05 nia Exp $ DISTNAME= stacks-2.60 -PKGREVISION= 1 +PKGREVISION= 2 CATEGORIES= biology MASTER_SITES= http://catchenlab.life.illinois.edu/stacks/source/ |