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author | rodent <rodent@pkgsrc.org> | 2013-04-06 13:24:18 +0000 |
---|---|---|
committer | rodent <rodent@pkgsrc.org> | 2013-04-06 13:24:18 +0000 |
commit | f6edf9d117c4d7e124d5c8410841c5db24c23455 (patch) | |
tree | 7e09ae380f09209fdebcf2ee8170c971a410c319 /biology | |
parent | fd02fa38a4879c44765fd924443a4b77a7d72d32 (diff) | |
download | pkgsrc-f6edf9d117c4d7e124d5c8410841c5db24c23455.tar.gz |
".for variable names should not contain uppercase letters"
Diffstat (limited to 'biology')
-rw-r--r-- | biology/genesplicer/Makefile | 6 | ||||
-rw-r--r-- | biology/glimmer/Makefile | 10 | ||||
-rw-r--r-- | biology/xylem/Makefile | 6 |
3 files changed, 11 insertions, 11 deletions
diff --git a/biology/genesplicer/Makefile b/biology/genesplicer/Makefile index 53c1f335cea..7b5e9ff731b 100644 --- a/biology/genesplicer/Makefile +++ b/biology/genesplicer/Makefile @@ -1,4 +1,4 @@ -# $NetBSD: Makefile,v 1.12 2012/09/11 20:32:12 asau Exp $ +# $NetBSD: Makefile,v 1.13 2013/04/06 13:24:18 rodent Exp $ # DISTNAME= GeneSplicer @@ -24,8 +24,8 @@ INSTALLATION_DIRS= bin do-install: ${INSTALL_PROGRAM} ${WRKSRC}/sources/genesplicer ${DESTDIR}${PREFIX}/bin ${INSTALL_DATA_DIR} ${DESTDIR}${EXDIR} -.for DOC in readme fasta.example fasta.results - ${INSTALL_DATA} ${WRKSRC}/sources/${DOC} ${DESTDIR}${EXDIR} +.for doc in readme fasta.example fasta.results + ${INSTALL_DATA} ${WRKSRC}/sources/${doc} ${DESTDIR}${EXDIR} .endfor cd ${WRKSRC} && pax -rw ${EXAMPLES} ${DESTDIR}${EXDIR} diff --git a/biology/glimmer/Makefile b/biology/glimmer/Makefile index 903dbf559c3..a755f0cdb75 100644 --- a/biology/glimmer/Makefile +++ b/biology/glimmer/Makefile @@ -1,4 +1,4 @@ -# $NetBSD: Makefile,v 1.12 2012/09/16 17:20:17 cheusov Exp $ +# $NetBSD: Makefile,v 1.13 2013/04/06 13:24:18 rodent Exp $ # DISTNAME= glimmer213 @@ -19,16 +19,16 @@ WRKSRC= ${WRKDIR}/glimmer2.13 INSTALLATION_DIRS= bin do-install: -.for PROGRAM in adjust anomaly build-icm check codon-usage compare-lists \ +.for program in adjust anomaly build-icm check codon-usage compare-lists \ generate get-len get-putative glimmer2 long-orfs - ${INSTALL_PROGRAM} ${WRKSRC}/${PROGRAM} ${DESTDIR}${PREFIX}/bin + ${INSTALL_PROGRAM} ${WRKSRC}/${program} ${DESTDIR}${PREFIX}/bin .endfor # ``extract'' is also in the csound package, so rename to avoid conflict ${INSTALL_PROGRAM} ${WRKSRC}/extract ${DESTDIR}${PREFIX}/bin/glextract ${INSTALL_DATA_DIR} ${DESTDIR}${PREFIX}/share/doc/glimmer ${CP} ${WRKSRC}/README ${WRKSRC}/run-glimmer2.readme -.for DOC in run-glimmer2.readme build-icm.readme extract.readme glimmer2.readme long-orfs.readme - ${INSTALL_DATA} ${WRKSRC}/${DOC} ${DESTDIR}${PREFIX}/share/doc/glimmer +.for doc in run-glimmer2.readme build-icm.readme extract.readme glimmer2.readme long-orfs.readme + ${INSTALL_DATA} ${WRKSRC}/${doc} ${DESTDIR}${PREFIX}/share/doc/glimmer .endfor ${INSTALL_DATA_DIR} ${DESTDIR}${PREFIX}/share/glimmer ${INSTALL_SCRIPT} ${WRKSRC}/run-glimmer2 ${DESTDIR}${PREFIX}/share/glimmer diff --git a/biology/xylem/Makefile b/biology/xylem/Makefile index 223bb00ab88..4ba7c051637 100644 --- a/biology/xylem/Makefile +++ b/biology/xylem/Makefile @@ -1,4 +1,4 @@ -# $NetBSD: Makefile,v 1.10 2012/09/11 20:32:14 asau Exp $ +# $NetBSD: Makefile,v 1.11 2013/04/06 13:24:18 rodent Exp $ # DISTNAME= xylem.1.8.7 @@ -27,9 +27,9 @@ post-build: ${MV} ${WRKSRC}/src.c/shuffle ${WRKSRC}/src.c/xyl-shuffle do-install: -.for PROGRAM in dbstat getloc getob xyl-identify prot2nuc reform ribosome \ +.for program in dbstat getloc getob xyl-identify prot2nuc reform ribosome \ splitdb xyl-shuffle flat2phyl phyl2flat - ${INSTALL_PROGRAM} ${WRKSRC}/src.c/${PROGRAM} ${DESTDIR}${PREFIX}/bin + ${INSTALL_PROGRAM} ${WRKSRC}/src.c/${program} ${DESTDIR}${PREFIX}/bin .endfor ${INSTALL_DATA_DIR} ${DESTDIR}${PREFIX}/share/doc/xylem ${INSTALL_DATA} ${WRKSRC}/doc/* ${DESTDIR}${PREFIX}/share/doc/xylem/ |