diff options
Diffstat (limited to 'biology/kallisto/patches/patch-src_CMakeLists.txt')
| -rw-r--r-- | biology/kallisto/patches/patch-src_CMakeLists.txt | 30 |
1 files changed, 30 insertions, 0 deletions
diff --git a/biology/kallisto/patches/patch-src_CMakeLists.txt b/biology/kallisto/patches/patch-src_CMakeLists.txt new file mode 100644 index 00000000000..f721fef7213 --- /dev/null +++ b/biology/kallisto/patches/patch-src_CMakeLists.txt @@ -0,0 +1,30 @@ +$NetBSD: patch-src_CMakeLists.txt,v 1.3 2022/02/27 01:57:27 bacon Exp $ + +# Unbundle htslib + +--- src/CMakeLists.txt.orig 2022-02-26 16:35:26.912550601 +0000 ++++ src/CMakeLists.txt +@@ -3,15 +3,13 @@ file(GLOB headers *.h *.hpp) + + list(REMOVE_ITEM sources main.cpp) + +-include_directories(../ext/htslib) +- + add_library(kallisto_core ${sources} ${headers}) + target_include_directories(kallisto_core PUBLIC ${CMAKE_CURRENT_SOURCE_DIR}) + + add_executable(kallisto main.cpp) + + find_package( Threads REQUIRED ) +-target_link_libraries(kallisto kallisto_core pthread ${CMAKE_CURRENT_SOURCE_DIR}/../ext/htslib/libhts.a) ++target_link_libraries(kallisto kallisto_core pthread hts) + + if(LINK MATCHES static) + set(BUILD_SHARED_LIBS OFF) +@@ -62,4 +60,4 @@ else() + endif(LINK MATCHES static) + + +-install(TARGETS kallisto DESTINATION "${CMAKE_INSTALL_BINDIR}") +\ No newline at end of file ++install(TARGETS kallisto DESTINATION "${CMAKE_INSTALL_BINDIR}") |