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$NetBSD: patch-src_CMakeLists.txt,v 1.3 2022/02/27 01:57:27 bacon Exp $
# Unbundle htslib
--- src/CMakeLists.txt.orig 2022-02-26 16:35:26.912550601 +0000
+++ src/CMakeLists.txt
@@ -3,15 +3,13 @@ file(GLOB headers *.h *.hpp)
list(REMOVE_ITEM sources main.cpp)
-include_directories(../ext/htslib)
-
add_library(kallisto_core ${sources} ${headers})
target_include_directories(kallisto_core PUBLIC ${CMAKE_CURRENT_SOURCE_DIR})
add_executable(kallisto main.cpp)
find_package( Threads REQUIRED )
-target_link_libraries(kallisto kallisto_core pthread ${CMAKE_CURRENT_SOURCE_DIR}/../ext/htslib/libhts.a)
+target_link_libraries(kallisto kallisto_core pthread hts)
if(LINK MATCHES static)
set(BUILD_SHARED_LIBS OFF)
@@ -62,4 +60,4 @@ else()
endif(LINK MATCHES static)
-install(TARGETS kallisto DESTINATION "${CMAKE_INSTALL_BINDIR}")
\ No newline at end of file
+install(TARGETS kallisto DESTINATION "${CMAKE_INSTALL_BINDIR}")
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