summaryrefslogtreecommitdiff
path: root/biology
AgeCommit message (Expand)AuthorFilesLines
2022-07-05htslib: updated to 1.15.1adam2-8/+7
2022-06-30*: Revbump packages that use Python at runtime without a PKGNAME prefixnia9-15/+18
2022-06-28*: recursive bump for perl 5.36wiz22-34/+44
2022-06-11biology/peak-classifier: Update to 0.1.4bacon3-7/+7
2022-06-11biology/vcf2hap: Update to 0.1.6bacon3-7/+7
2022-06-11biology/ad2vcf: Update to 0.1.6bacon3-7/+7
2022-06-11biology/vcf-split: Update to 0.1.5bacon3-7/+7
2022-06-11biology/biolibc-tools: Update to 0.1.3bacon3-7/+9
2022-06-11biology/biolibc: Update to 0.2.3bacon4-15/+62
2022-04-25stacks: needs -lsocket on SunOStnn1-1/+3
2022-04-25stacks: avoid ambiguous math functionstnn7-1/+100
2022-04-18revbump for textproc/icu updateadam7-13/+14
2022-04-10biology/ncbi-blast+: Update to 2.13.0bacon6-51/+276
2022-04-05biology/Makefile: Add fastx-toolkitbacon1-1/+2
2022-04-05biology/fastx-toolkit: CLI tools for FASTA/FASTQ files preprocessingbacon7-0/+109
2022-04-03revbump for devel/protobufadam1-2/+2
2022-03-17biology/stacks: Update to 2.60bacon3-63/+35
2022-03-17biology/hisat2: Update to 2.2.1bacon7-482/+198
2022-03-16biology/ncbi-blast+: Disable MKPIEbacon1-1/+2
2022-03-15biology/vcf2hap: Update to 0.1.5bacon3-7/+7
2022-03-15biology/vcf-split: Update to 0.1.4bacon3-8/+7
2022-03-15biology/peak-classifier: Update to 0.1.3bacon3-7/+7
2022-03-15biology/biolibc-tools: Update to 0.1.2bacon3-7/+11
2022-03-15biology/ad2vcf: Update to 0.1.5bacon3-7/+7
2022-03-15biology/biolibc: Update to 0.2.2bacon4-21/+113
2022-03-13(biology/minimap2) Updated 2.18 to 2.24mef2-12/+8
2022-02-27biology/kallisto: Update to 0.48.0bacon6-8/+81
2022-02-26biology/bcftools: Update to 1.15bacon4-8/+8
2022-02-26biology/samtools: Update to 1.15bacon4-8/+10
2022-02-26biology/htslib: Update to 1.15bacon4-8/+8
2022-02-17py-biopython: update to 1.79.wiz3-105/+115
2022-02-17py-mol: removewiz5-1028/+1
2022-01-17py-cutadapt: updated to 3.5adam3-10/+17
2022-01-11biology/molsketch: fix broken buildpin1-2/+2
2022-01-10py-mol: convert to egg.mkwiz2-5/+4
2022-01-10*: Recursive revbump from boost 1.78.0ryoon6-12/+12
2022-01-05python: egg.mk: add USE_PKG_RESOURCES flagwiz2-4/+8
2022-01-04*: bump PKGREVISION for egg.mk userswiz4-5/+8
2021-12-30Forget about Python 3.6adam2-5/+3
2021-12-17biology/vsearch: Update to 2.18.0bacon7-32/+42
2021-12-17biology/cdhit: Update to 4.8.1bacon3-15/+21
2021-12-17biology/bowtie2: Update to 2.4.4bacon5-20/+14
2021-12-17biology/bcftools: Update to 1.14bacon4-10/+8
2021-12-17biology/samtools: Update to 1.14bacon4-10/+10
2021-12-17biology/htslib: Update to 1.14bacon4-11/+10
2021-12-14biology/vcf2hap: Update to 0.1.4bacon3-9/+9
2021-12-14biology/vcf-split: Update to 0.1.3.3bacon3-9/+10
2021-12-14biology/peak-classifier: Update to 0.1.2bacon3-9/+7
2021-12-14biology/biolibc-tools: Update to 0.1.1bacon3-15/+31
2021-12-14biology/ad2vcf: Update to 0.1.4bacon3-9/+9